RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 GJA8P48165 433 aa16.29■□□□□ 0.2
VCL-205ENST00000478896 TTC39AQ5SRH9 613 aa16.29■□□□□ 0.2
VCL-205ENST00000478896 TEX11Q8IYF3 940 aa16.29■□□□□ 0.2
VCL-205ENST00000478896 ANKRD13CQ8N6S4 541 aa16.29■□□□□ 0.2
VCL-205ENST00000478896 DPF3Q92784 378 aa16.29■□□□□ 0.2
VCL-205ENST00000478896 ADCY3O60266 1144 aa16.28■□□□□ 0.2
VCL-205ENST00000478896 GJB1P08034 283 aa16.28■□□□□ 0.2
VCL-205ENST00000478896 FLT3LGP49771 235 aa16.28■□□□□ 0.2
VCL-205ENST00000478896 ZKSCAN2Q63HK3 967 aa16.28■□□□□ 0.2
VCL-205ENST00000478896 TMEM57Q8N5G2 664 aa16.28■□□□□ 0.2
VCL-205ENST00000478896 COLQQ9Y215 455 aaPredicted RBP16.28■□□□□ 0.2
VCL-205ENST00000478896 H0YGN5 161 aa16.27■□□□□ 0.2
VCL-205ENST00000478896 BAG3O95817 575 aa16.27■□□□□ 0.2
VCL-205ENST00000478896 SPP2Q13103 211 aa16.27■□□□□ 0.2
VCL-205ENST00000478896 CCDC158Q5M9N0 1113 aa16.27■□□□□ 0.2
VCL-205ENST00000478896 TREML2Q5T2D2 321 aa16.27■□□□□ 0.2
VCL-205ENST00000478896 NAA16Q6N069 864 aaPredicted RBP16.27■□□□□ 0.2
VCL-205ENST00000478896 PROCA1Q8NCQ7 364 aaPredicted RBP16.27■□□□□ 0.2
VCL-205ENST00000478896 ZNF280CQ8ND82 737 aa16.27■□□□□ 0.2
VCL-205ENST00000478896 COA7Q96BR5 231 aa16.27■□□□□ 0.2
VCL-205ENST00000478896 HTATIP2Q9BUP3 242 aa16.27■□□□□ 0.2
VCL-205ENST00000478896 TBC1D2Q9BYX2 928 aa16.27■□□□□ 0.2
VCL-205ENST00000478896 AS3MTQ9HBK9 375 aa16.27■□□□□ 0.2
VCL-205ENST00000478896 AATFQ9NY61 560 aaKnown RBP eCLIP16.27■□□□□ 0.2
VCL-205ENST00000478896 CDK5RAP2Q96SN8 1893 aa16.27■□□□□ 0.19
VCL-205ENST00000478896 ELNP15502 786 aa16.26■□□□□ 0.19
VCL-205ENST00000478896 CAP2P40123 477 aa16.26■□□□□ 0.19
VCL-205ENST00000478896 HMGCS2P54868 508 aa16.26■□□□□ 0.19
VCL-205ENST00000478896 PABPC4Q13310 644 aaKnown RBP eCLIP16.26■□□□□ 0.19
VCL-205ENST00000478896 FAM110CQ1W6H9 321 aa16.26■□□□□ 0.19
VCL-205ENST00000478896 TNNI3KQ59H18 835 aa16.26■□□□□ 0.19
VCL-205ENST00000478896 FTSJ3Q8IY81 847 aaKnown RBP16.26■□□□□ 0.19
VCL-205ENST00000478896 SH3RF3Q8TEJ3 882 aaPredicted RBP16.26■□□□□ 0.19
VCL-205ENST00000478896 U2AF1L4Q8WU68 220 aaKnown RBP16.26■□□□□ 0.19
VCL-205ENST00000478896 TRIM34Q9BYJ4 488 aa16.26■□□□□ 0.19
VCL-205ENST00000478896 UNC93B1Q9H1C4 597 aa16.26■□□□□ 0.19
VCL-205ENST00000478896 SNRKQ9NRH2 765 aa16.26■□□□□ 0.19
VCL-205ENST00000478896 HERC5Q9UII4 1024 aaKnown RBP16.26■□□□□ 0.19
VCL-205ENST00000478896 FPGT-TNNI3KV9GXZ4 949 aa16.26■□□□□ 0.19
VCL-205ENST00000478896 FOCADQ5VW36 1801 aa16.26■□□□□ 0.19
VCL-205ENST00000478896 MYO5AQ9Y4I1 1855 aaKnown RBP16.25■□□□□ 0.19
VCL-205ENST00000478896 SIPA1L1O43166 1804 aa16.25■□□□□ 0.19
VCL-205ENST00000478896 USP17L5A8MUK1 530 aa16.25■□□□□ 0.19
VCL-205ENST00000478896 FARP2O94887 1054 aaPredicted RBP16.25■□□□□ 0.19
VCL-205ENST00000478896 INHAP05111 366 aa16.25■□□□□ 0.19
VCL-205ENST00000478896 PLCG2P16885 1265 aa16.25■□□□□ 0.19
VCL-205ENST00000478896 FXR1P51114 621 aaKnown RBP eCLIP16.25■□□□□ 0.192e-6■■■□□ 15.2
VCL-205ENST00000478896 PXYLP1Q8TE99 480 aa16.25■□□□□ 0.19
VCL-205ENST00000478896 DBNDD2Q9BQY9 259 aa16.25■□□□□ 0.19
VCL-205ENST00000478896 DOCK3Q8IZD9 2030 aa16.24■□□□□ 0.19
VCL-205ENST00000478896 SURF6O75683 361 aaKnown RBP16.24■□□□□ 0.19
VCL-205ENST00000478896 IRF5Q13568 498 aa16.24■□□□□ 0.19
VCL-205ENST00000478896 CHRDL2Q6WN34 429 aa16.24■□□□□ 0.19
VCL-205ENST00000478896 TGFBRAP1Q8WUH2 860 aa16.24■□□□□ 0.19
VCL-205ENST00000478896 DHX36Q9H2U1 1008 aaKnown RBP16.24■□□□□ 0.19
VCL-205ENST00000478896 C1orf115Q9H7X2 142 aa16.24■□□□□ 0.19
VCL-205ENST00000478896 GPR108Q9NPR9 543 aa16.24■□□□□ 0.19
VCL-205ENST00000478896 PI4KBQ9UBF8 816 aa16.24■□□□□ 0.19
VCL-205ENST00000478896 SGPL1O95470 568 aa16.23■□□□□ 0.19
VCL-205ENST00000478896 GCLCP48506 637 aaPredicted RBP16.23■□□□□ 0.19
VCL-205ENST00000478896 POLA2Q14181 598 aa16.23■□□□□ 0.19
VCL-205ENST00000478896 MAPKAPK5Q8IW41 473 aa16.23■□□□□ 0.19
VCL-205ENST00000478896 ITPRIPQ8IWB1 547 aa16.23■□□□□ 0.19
VCL-205ENST00000478896 CRACR2BQ8N4Y2 399 aaPredicted RBP16.23■□□□□ 0.19
VCL-205ENST00000478896 FLT1P17948 1338 aa16.22■□□□□ 0.19
VCL-205ENST00000478896 IRX3P78415 501 aaPredicted RBP16.22■□□□□ 0.19
VCL-205ENST00000478896 ATP8B2P98198 1209 aa16.22■□□□□ 0.19
VCL-205ENST00000478896 MTMR2Q13614 643 aa16.22■□□□□ 0.19
VCL-205ENST00000478896 RRP1BQ14684 758 aaKnown RBP16.22■□□□□ 0.19
VCL-205ENST00000478896 SSH3Q8TE77 659 aa16.22■□□□□ 0.19
VCL-205ENST00000478896 TMOD4Q9NZQ9 345 aa16.22■□□□□ 0.19
VCL-205ENST00000478896 TFRCP02786 760 aaKnown RBP16.21■□□□□ 0.19
VCL-205ENST00000478896 CYP2E1P05181 493 aaPredicted RBP16.21■□□□□ 0.19
VCL-205ENST00000478896 HLA-DOAP06340 250 aa16.21■□□□□ 0.19
VCL-205ENST00000478896 ASNSP08243 561 aa16.21■□□□□ 0.19
VCL-205ENST00000478896 ZAP70P43403 619 aa16.21■□□□□ 0.19
VCL-205ENST00000478896 ADGRA1Q86SQ6 560 aa16.21■□□□□ 0.19
VCL-205ENST00000478896 DEFB118Q96PH6 123 aa16.21■□□□□ 0.19
VCL-205ENST00000478896 ASCC2Q9H1I8 757 aaPredicted RBP16.21■□□□□ 0.19
VCL-205ENST00000478896 NR2E3Q9Y5X4 410 aa16.21■□□□□ 0.19
VCL-205ENST00000478896 MYH1P12882 1939 aa16.2■□□□□ 0.18
VCL-205ENST00000478896 GDF11O95390 407 aa16.2■□□□□ 0.18
VCL-205ENST00000478896 HNRNPUQ00839 825 aaKnown RBP eCLIP16.2■□□□□ 0.18
VCL-205ENST00000478896 SH3D19Q5HYK7 790 aa16.2■□□□□ 0.18
VCL-205ENST00000478896 UBE2Q1Q7Z7E8 422 aa16.2■□□□□ 0.18
VCL-205ENST00000478896 PALD1Q9ULE6 856 aa16.2■□□□□ 0.18
VCL-205ENST00000478896 IDH1O75874 414 aaKnown RBP16.19■□□□□ 0.18
VCL-205ENST00000478896 BACE1P56817 501 aa16.19■□□□□ 0.18
VCL-205ENST00000478896 PPP4CP60510 307 aa16.19■□□□□ 0.18
VCL-205ENST00000478896 ZNF512BQ96KM6 892 aaPredicted RBP16.19■□□□□ 0.18
VCL-205ENST00000478896 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.19■□□□□ 0.181e-7■■■□□ 15
VCL-205ENST00000478896 CCDC8Q9H0W5 538 aaPredicted RBP16.19■□□□□ 0.18
VCL-205ENST00000478896 DNAJC18Q9H819 358 aa16.19■□□□□ 0.18
VCL-205ENST00000478896 PAK6Q9NQU5 681 aaPredicted RBP16.19■□□□□ 0.18
VCL-205ENST00000478896 SAP30BPQ9UHR5 308 aaKnown RBP16.19■□□□□ 0.18
VCL-205ENST00000478896 EVI5O60447 810 aa16.18■□□□□ 0.18
VCL-205ENST00000478896 IGSF3O75054 1194 aa16.18■□□□□ 0.18
VCL-205ENST00000478896 HMGCRP04035 888 aa16.18■□□□□ 0.18
VCL-205ENST00000478896 CAPN2P17655 700 aa16.18■□□□□ 0.18
VCL-205ENST00000478896 CYP7A1P22680 504 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms