RNA–Protein interactions for RNA: ENST00000474564.1

COL12A1-206, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 3

Gene COL12A1, Length 499 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-206ENST00000474564 CSRNP1Q96S65 589 aa12.21□□□□□ -0.45
COL12A1-206ENST00000474564 UBAC1Q9BSL1 405 aa12.21□□□□□ -0.45
COL12A1-206ENST00000474564 EHD4Q9H223 541 aa12.21□□□□□ -0.45
COL12A1-206ENST00000474564 ZSWIM6Q9HCJ5 1215 aa12.21□□□□□ -0.45
COL12A1-206ENST00000474564 PDRG1Q9NUG6 133 aa12.21□□□□□ -0.45
COL12A1-206ENST00000474564 MKRN1Q9UHC7 482 aaKnown RBP12.21□□□□□ -0.45
COL12A1-206ENST00000474564 HERC5Q9UII4 1024 aaKnown RBP12.21□□□□□ -0.45
COL12A1-206ENST00000474564 PITPNM2Q9BZ72 1349 aa12.2□□□□□ -0.46
COL12A1-206ENST00000474564 TSPY2A6NKD2 308 aa12.2□□□□□ -0.46
COL12A1-206ENST00000474564 ORC4O43929 436 aa12.2□□□□□ -0.46
COL12A1-206ENST00000474564 TSPY3P0CV98 308 aa12.2□□□□□ -0.46
COL12A1-206ENST00000474564 TSPY8P0CW00 308 aa12.2□□□□□ -0.46
COL12A1-206ENST00000474564 RASA3Q14644 834 aa12.2□□□□□ -0.46
COL12A1-206ENST00000474564 EAPPQ56P03 285 aaPredicted RBP12.2□□□□□ -0.46
COL12A1-206ENST00000474564 ANGEL2Q5VTE6 544 aaKnown RBP12.2□□□□□ -0.46
COL12A1-206ENST00000474564 RASEFQ8IZ41 740 aa12.2□□□□□ -0.46
COL12A1-206ENST00000474564 STK11IPQ8N1F8 1099 aa12.2□□□□□ -0.46
COL12A1-206ENST00000474564 IL17RAQ96F46 866 aa12.2□□□□□ -0.46
COL12A1-206ENST00000474564 TMEM87BQ96K49 555 aa12.2□□□□□ -0.46
COL12A1-206ENST00000474564 CCDC17Q96LX7 622 aa12.2□□□□□ -0.46
COL12A1-206ENST00000474564 MTA3Q9BTC8 594 aa12.2□□□□□ -0.46
COL12A1-206ENST00000474564 CABP5Q9NP86 173 aa12.2□□□□□ -0.46
COL12A1-206ENST00000474564 WDR19Q8NEZ3 1342 aa12.19□□□□□ -0.46
COL12A1-206ENST00000474564 FOXP2O15409 715 aa12.19□□□□□ -0.46
COL12A1-206ENST00000474564 HSP90AA1P07900 732 aaKnown RBP12.19□□□□□ -0.46
COL12A1-206ENST00000474564 RPS6KB1P23443 525 aa12.19□□□□□ -0.46
COL12A1-206ENST00000474564 CDK8P49336 464 aa12.19□□□□□ -0.46
COL12A1-206ENST00000474564 NFIAQ12857 509 aa12.19□□□□□ -0.46
COL12A1-206ENST00000474564 SLC4A8Q2Y0W8 1093 aa12.19□□□□□ -0.46
COL12A1-206ENST00000474564 C16orf86Q6ZW13 317 aa12.19□□□□□ -0.46
COL12A1-206ENST00000474564 DEFB129Q9H1M3 183 aa12.19□□□□□ -0.46
COL12A1-206ENST00000474564 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.19□□□□□ -0.46
COL12A1-206ENST00000474564 DDX4Q9NQI0 724 aaKnown RBP12.19□□□□□ -0.46
COL12A1-206ENST00000474564 FAM198AQ9UFP1 575 aa12.19□□□□□ -0.46
COL12A1-206ENST00000474564 PCDHAC2Q9Y5I4 1007 aa12.19□□□□□ -0.46
COL12A1-206ENST00000474564 TIAM2Q8IVF5 1701 aa12.19□□□□□ -0.46
COL12A1-206ENST00000474564 CYP2D7A0A087X1C5 515 aa12.18□□□□□ -0.46
COL12A1-206ENST00000474564 SHTN1A0MZ66 631 aa12.18□□□□□ -0.46
COL12A1-206ENST00000474564 B4E1Z4 1266 aa12.18□□□□□ -0.46
COL12A1-206ENST00000474564 IFIT3O14879 490 aaKnown RBP12.18□□□□□ -0.46
COL12A1-206ENST00000474564 PRC1O43663 620 aa12.18□□□□□ -0.46
COL12A1-206ENST00000474564 KDM4AO75164 1064 aa12.18□□□□□ -0.46
COL12A1-206ENST00000474564 NFXL1Q6ZNB6 911 aa12.18□□□□□ -0.46
COL12A1-206ENST00000474564 TRPM4Q8TD43 1214 aa12.18□□□□□ -0.46
COL12A1-206ENST00000474564 ZSCAN31Q96LW9 406 aaPredicted RBP12.18□□□□□ -0.46
COL12A1-206ENST00000474564 UPF3BQ9BZI7 483 aaKnown RBP12.18□□□□□ -0.46
COL12A1-206ENST00000474564 TAF1DQ9H5J8 278 aaPredicted RBP12.18□□□□□ -0.46
COL12A1-206ENST00000474564 GGA3Q9NZ52 723 aa12.18□□□□□ -0.46
COL12A1-206ENST00000474564 COL2A1P02458 1487 aaPredicted RBP12.18□□□□□ -0.46
COL12A1-206ENST00000474564 ATRNL1Q5VV63 1379 aa12.18□□□□□ -0.46
COL12A1-206ENST00000474564 CCDC69A6NI79 296 aa12.17□□□□□ -0.46
COL12A1-206ENST00000474564 MPHOSPH10O00566 681 aaKnown RBP12.17□□□□□ -0.46
COL12A1-206ENST00000474564 TBC1D12O60347 775 aa12.17□□□□□ -0.46
COL12A1-206ENST00000474564 FGRP09769 529 aa12.17□□□□□ -0.46
COL12A1-206ENST00000474564 CYP2D6P10635 497 aa12.17□□□□□ -0.46
COL12A1-206ENST00000474564 PLCD1P51178 756 aa12.17□□□□□ -0.46
COL12A1-206ENST00000474564 TFAP4Q01664 338 aa12.17□□□□□ -0.46
COL12A1-206ENST00000474564 ADCK5Q3MIX3 580 aa12.17□□□□□ -0.46
COL12A1-206ENST00000474564 CERKLQ49MI3 558 aaPredicted RBP12.17□□□□□ -0.46
COL12A1-206ENST00000474564 TMEM67Q5HYA8 995 aa12.17□□□□□ -0.46
COL12A1-206ENST00000474564 CDC37L1Q7L3B6 337 aa12.17□□□□□ -0.46
COL12A1-206ENST00000474564 TBC1D10CQ8IV04 446 aa12.17□□□□□ -0.46
COL12A1-206ENST00000474564 ALDH8A1Q9H2A2 487 aaPredicted RBP12.17□□□□□ -0.46
COL12A1-206ENST00000474564 RRAGCQ9HB90 399 aa12.17□□□□□ -0.46
COL12A1-206ENST00000474564 ZSWIM5Q9P217 1185 aa12.17□□□□□ -0.46
COL12A1-206ENST00000474564 NAP1L2Q9ULW6 460 aaPredicted RBP12.17□□□□□ -0.46
COL12A1-206ENST00000474564 ROBO3Q96MS0 1386 aa12.17□□□□□ -0.46
COL12A1-206ENST00000474564 DDTLA6NHG4 134 aaPredicted RBP12.16□□□□□ -0.46
COL12A1-206ENST00000474564 PPP1R12BO60237 982 aaPredicted RBP12.16□□□□□ -0.46
COL12A1-206ENST00000474564 WTAPQ15007 396 aa12.16□□□□□ -0.46
COL12A1-206ENST00000474564 KRT26Q7Z3Y9 468 aa12.16□□□□□ -0.46
COL12A1-206ENST00000474564 SNX21Q969T3 373 aa12.16□□□□□ -0.46
COL12A1-206ENST00000474564 DYNLL2Q96FJ2 89 aa12.16□□□□□ -0.46
COL12A1-206ENST00000474564 TMEM39BQ9GZU3 492 aa12.16□□□□□ -0.46
COL12A1-206ENST00000474564 GINM1Q9NU53 330 aa12.16□□□□□ -0.46
COL12A1-206ENST00000474564 LIMCH1Q9UPQ0 1083 aa12.16□□□□□ -0.46
COL12A1-206ENST00000474564 DHX16O60231 1041 aaKnown RBP12.15□□□□□ -0.46
COL12A1-206ENST00000474564 PRDM1O75626 825 aa12.15□□□□□ -0.46
COL12A1-206ENST00000474564 EGFRP00533 1210 aa12.15□□□□□ -0.46
COL12A1-206ENST00000474564 HIRAP54198 1017 aaPredicted RBP12.15□□□□□ -0.46
COL12A1-206ENST00000474564 Q6ZUG5 572 aa12.15□□□□□ -0.46
COL12A1-206ENST00000474564 USP48Q86UV5 1035 aa12.15□□□□□ -0.46
COL12A1-206ENST00000474564 LDHDQ86WU2 507 aa12.15□□□□□ -0.46
COL12A1-206ENST00000474564 ZFPM1Q8IX07 1006 aa12.15□□□□□ -0.46
COL12A1-206ENST00000474564 TTC14Q96N46 770 aa12.15□□□□□ -0.46
COL12A1-206ENST00000474564 ZSCAN10Q96SZ4 725 aaPredicted RBP12.15□□□□□ -0.46
COL12A1-206ENST00000474564 KIF2CQ99661 725 aa12.15□□□□□ -0.46
COL12A1-206ENST00000474564 ZNF341Q9BYN7 854 aa12.15□□□□□ -0.46
COL12A1-206ENST00000474564 SH2B1Q9NRF2 756 aaPredicted RBP12.15□□□□□ -0.46
COL12A1-206ENST00000474564 ANGEL1Q9UNK9 670 aaKnown RBP12.15□□□□□ -0.46
COL12A1-206ENST00000474564 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.15□□□□□ -0.46
COL12A1-206ENST00000474564 NEDD4P46934 1319 aa12.14□□□□□ -0.47
COL12A1-206ENST00000474564 ZNF646O15015 1829 aaPredicted RBP12.14□□□□□ -0.47
COL12A1-206ENST00000474564 CALM1P0DP23 149 aa12.14□□□□□ -0.47
COL12A1-206ENST00000474564 CALM2P0DP24 149 aa12.14□□□□□ -0.47
COL12A1-206ENST00000474564 CALM3P0DP25 149 aa12.14□□□□□ -0.47
COL12A1-206ENST00000474564 LIFRP42702 1097 aa12.14□□□□□ -0.47
COL12A1-206ENST00000474564 EXOSC10Q01780 885 aaKnown RBP12.14□□□□□ -0.47
COL12A1-206ENST00000474564 GABPAQ06546 454 aa12.14□□□□□ -0.47
COL12A1-206ENST00000474564 ABCB5Q2M3G0 1257 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms