RNA–Protein interactions for RNA: ENST00000460408.5

RFC4-211, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 628 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-211ENST00000460408 SLC38A3Q99624 504 aa5.7□□□□□ -1.5
RFC4-211ENST00000460408 KRTAP4-11Q9BYQ6 195 aa5.7□□□□□ -1.5
RFC4-211ENST00000460408 BCL11AQ9H165 835 aa5.7□□□□□ -1.5
RFC4-211ENST00000460408 EHD4Q9H223 541 aa5.7□□□□□ -1.5
RFC4-211ENST00000460408 CCDC86Q9H6F5 360 aaKnown RBP5.7□□□□□ -1.5
RFC4-211ENST00000460408 PIDD1Q9HB75 910 aa5.7□□□□□ -1.5
RFC4-211ENST00000460408 ABCB6Q9NP58 842 aa5.7□□□□□ -1.5
RFC4-211ENST00000460408 DISC1Q9NRI5 854 aa5.7□□□□□ -1.5
RFC4-211ENST00000460408 FAM8A1Q9UBU6 413 aa5.7□□□□□ -1.5
RFC4-211ENST00000460408 PCDHGC5Q9Y5F6 944 aa5.7□□□□□ -1.5
RFC4-211ENST00000460408 TMEM265A0A087WTH1 108 aa5.69□□□□□ -1.5
RFC4-211ENST00000460408 KRTAP9-7A8MTY7 169 aa5.69□□□□□ -1.5
RFC4-211ENST00000460408 ZNF862O60290 1169 aa5.69□□□□□ -1.5
RFC4-211ENST00000460408 GADD45BO75293 160 aaPredicted RBP5.69□□□□□ -1.5
RFC4-211ENST00000460408 CEACAM5P06731 702 aa5.69□□□□□ -1.5
RFC4-211ENST00000460408 SLFN14P0C7P3 912 aa5.69□□□□□ -1.5
RFC4-211ENST00000460408 ITGAEP38570 1179 aa5.69□□□□□ -1.5
RFC4-211ENST00000460408 OXCT1P55809 520 aa5.69□□□□□ -1.5
RFC4-211ENST00000460408 TSNAXIP1Q2TAA8 658 aa5.69□□□□□ -1.5
RFC4-211ENST00000460408 KIF4BQ2VIQ3 1234 aa5.69□□□□□ -1.5
RFC4-211ENST00000460408 SLC23A3Q6PIS1 610 aa5.69□□□□□ -1.5
RFC4-211ENST00000460408 CILP2Q8IUL8 1156 aa5.69□□□□□ -1.5
RFC4-211ENST00000460408 C3orf58Q8NDZ4 430 aa5.69□□□□□ -1.5
RFC4-211ENST00000460408 FLAD1Q8NFF5 587 aa5.69□□□□□ -1.5
RFC4-211ENST00000460408 VTI1BQ9UEU0 232 aa5.69□□□□□ -1.5
RFC4-211ENST00000460408 PLAGL2Q9UPG8 496 aa5.69□□□□□ -1.5
RFC4-211ENST00000460408 TRAK1Q9UPV9 953 aa5.69□□□□□ -1.5
RFC4-211ENST00000460408 LEFTY1O75610 366 aa5.68□□□□□ -1.5
RFC4-211ENST00000460408 USP17L7P0C7H9 530 aa5.68□□□□□ -1.5
RFC4-211ENST00000460408 ANGEL2Q5VTE6 544 aaKnown RBP5.68□□□□□ -1.5
RFC4-211ENST00000460408 DUSP23Q9BVJ7 150 aa5.68□□□□□ -1.5
RFC4-211ENST00000460408 TNKS2Q9H2K2 1166 aa5.68□□□□□ -1.5
RFC4-211ENST00000460408 KRT82Q9NSB4 513 aa5.68□□□□□ -1.5
RFC4-211ENST00000460408 TMEM238LA0A1B0GVL6 79 aa5.67□□□□□ -1.5
RFC4-211ENST00000460408 TCF3P15923 654 aa5.67□□□□□ -1.5
RFC4-211ENST00000460408 FANCCQ00597 558 aa5.67□□□□□ -1.5
RFC4-211ENST00000460408 TTLL4Q14679 1199 aa5.67□□□□□ -1.5
RFC4-211ENST00000460408 ANKRD24Q8TF21 1146 aa5.67□□□□□ -1.5
RFC4-211ENST00000460408 FAM53CQ9NYF3 392 aa5.67□□□□□ -1.5
RFC4-211ENST00000460408 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.67□□□□□ -1.5
RFC4-211ENST00000460408 PCOLCE2Q9UKZ9 415 aa5.67□□□□□ -1.5
RFC4-211ENST00000460408 SNX11Q9Y5W9 270 aa5.67□□□□□ -1.5
RFC4-211ENST00000460408 USP31Q70CQ4 1352 aa5.67□□□□□ -1.5
RFC4-211ENST00000460408 LRRC10BA6NIK2 292 aa5.66□□□□□ -1.5
RFC4-211ENST00000460408 SCAMP3O14828 347 aaKnown RBP5.66□□□□□ -1.5
RFC4-211ENST00000460408 GSTT1P30711 240 aa5.66□□□□□ -1.5
RFC4-211ENST00000460408 RANGAP1P46060 587 aaPredicted RBP5.66□□□□□ -1.5
RFC4-211ENST00000460408 HNRNPUQ00839 825 aaKnown RBP eCLIP5.66□□□□□ -1.5
RFC4-211ENST00000460408 FAAP100Q0VG06 881 aa5.66□□□□□ -1.5
RFC4-211ENST00000460408 MEI1Q5TIA1 1274 aa5.66□□□□□ -1.5
RFC4-211ENST00000460408 ARHGAP27Q6ZUM4 889 aa5.66□□□□□ -1.5
RFC4-211ENST00000460408 ZSWIM9Q86XI8 627 aa5.66□□□□□ -1.5
RFC4-211ENST00000460408 METTL5Q9NRN9 209 aaKnown RBP5.66□□□□□ -1.5
RFC4-211ENST00000460408 ZNF503-AS2A6NEH8 195 aa5.65□□□□□ -1.5
RFC4-211ENST00000460408 GSTP1P09211 210 aaKnown RBP5.65□□□□□ -1.5
RFC4-211ENST00000460408 XRCC5P13010 732 aaKnown RBP5.65□□□□□ -1.5
RFC4-211ENST00000460408 ST13P50502 369 aaKnown RBP5.65□□□□□ -1.5
RFC4-211ENST00000460408 FCGRTP55899 365 aa5.65□□□□□ -1.5
RFC4-211ENST00000460408 METTL16Q86W50 562 aaKnown RBP5.65□□□□□ -1.5
RFC4-211ENST00000460408 TMEM87AQ8NBN3 555 aa5.65□□□□□ -1.5
RFC4-211ENST00000460408 ZC3H12CQ9C0D7 883 aaKnown RBP5.65□□□□□ -1.5
RFC4-211ENST00000460408 RNGTTO60942 597 aaKnown RBP5.64□□□□□ -1.51
RFC4-211ENST00000460408 NEFMP07197 916 aa5.64□□□□□ -1.51
RFC4-211ENST00000460408 HCLS1P14317 486 aaPredicted RBP5.64□□□□□ -1.51
RFC4-211ENST00000460408 HDLBPQ00341 1268 aaKnown RBP5.64□□□□□ -1.51
RFC4-211ENST00000460408 TAF1CQ15572 869 aaPredicted RBP5.64□□□□□ -1.51
RFC4-211ENST00000460408 FAM214BQ7L5A3 538 aa5.64□□□□□ -1.51
RFC4-211ENST00000460408 PDZD3Q86UT5 571 aa5.64□□□□□ -1.51
RFC4-211ENST00000460408 HEXIM2Q96MH2 286 aaKnown RBP5.64□□□□□ -1.51
RFC4-211ENST00000460408 PPM1HQ9ULR3 514 aa5.64□□□□□ -1.51
RFC4-211ENST00000460408 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.63□□□□□ -1.51
RFC4-211ENST00000460408 ZNF157P51786 506 aaPredicted RBP5.63□□□□□ -1.51
RFC4-211ENST00000460408 KCNMB1Q16558 191 aa5.63□□□□□ -1.51
RFC4-211ENST00000460408 MLANAQ16655 118 aa5.63□□□□□ -1.51
RFC4-211ENST00000460408 TOP6BLQ8N6T0 577 aa5.63□□□□□ -1.51
RFC4-211ENST00000460408 ASB11Q8WXH4 323 aa5.63□□□□□ -1.51
RFC4-211ENST00000460408 ISL2Q96A47 359 aa5.63□□□□□ -1.51
RFC4-211ENST00000460408 TOX2Q96NM4 488 aa5.63□□□□□ -1.51
RFC4-211ENST00000460408 PPP4R2Q9NY27 417 aa5.63□□□□□ -1.51
RFC4-211ENST00000460408 IGF2BP3O00425 579 aaKnown RBP eCLIP5.62□□□□□ -1.51
RFC4-211ENST00000460408 TSPAN15O95858 294 aa5.62□□□□□ -1.51
RFC4-211ENST00000460408 ITIH2P19823 946 aa5.62□□□□□ -1.51
RFC4-211ENST00000460408 CFPP27918 469 aa5.62□□□□□ -1.51
RFC4-211ENST00000460408 ZNF76P36508 570 aa5.62□□□□□ -1.51
RFC4-211ENST00000460408 RAP1GAPP47736 663 aa5.62□□□□□ -1.51
RFC4-211ENST00000460408 RAD51AP2Q09MP3 1159 aa5.62□□□□□ -1.51
RFC4-211ENST00000460408 DTHD1Q6ZMT9 781 aa5.62□□□□□ -1.51
RFC4-211ENST00000460408 C1QL4Q86Z23 238 aa5.62□□□□□ -1.51
RFC4-211ENST00000460408 RNF214Q8ND24 703 aa5.62□□□□□ -1.51
RFC4-211ENST00000460408 PRDM7Q9NQW5 492 aa5.62□□□□□ -1.51
RFC4-211ENST00000460408 CTNND2Q9UQB3 1225 aa5.62□□□□□ -1.51
RFC4-211ENST00000460408 ERVK-24P63145 666 aa5.61□□□□□ -1.51
RFC4-211ENST00000460408 ZP2Q05996 745 aa5.61□□□□□ -1.51
RFC4-211ENST00000460408 ZC3H12AQ5D1E8 599 aaKnown RBP5.61□□□□□ -1.51
RFC4-211ENST00000460408 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.61□□□□□ -1.51
RFC4-211ENST00000460408 RNF34Q969K3 372 aa5.61□□□□□ -1.51
RFC4-211ENST00000460408 PPP1R16BQ96T49 567 aa5.61□□□□□ -1.51
RFC4-211ENST00000460408 NOC4LQ9BVI4 516 aaKnown RBP5.61□□□□□ -1.51
RFC4-211ENST00000460408 GTF2IRD1Q9UHL9 959 aa5.61□□□□□ -1.51
RFC4-211ENST00000460408 TTF2Q9UNY4 1162 aaKnown RBP5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms