RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 FAM129BQ96TA1 746 aa6.97□□□□□ -1.29
VPS41-209ENST00000457055 WDR18Q9BV38 432 aa6.97□□□□□ -1.29
VPS41-209ENST00000457055 GSX1Q9H4S2 264 aaPredicted RBP6.97□□□□□ -1.29
VPS41-209ENST00000457055 SLC52A1Q9NWF4 448 aa6.97□□□□□ -1.29
VPS41-209ENST00000457055 ZC3H7BQ9UGR2 993 aaKnown RBP6.97□□□□□ -1.29
VPS41-209ENST00000457055 TDRD9Q8NDG6 1382 aaKnown RBP6.96□□□□□ -1.29
VPS41-209ENST00000457055 PRDM2Q13029 1718 aa6.96□□□□□ -1.29
VPS41-209ENST00000457055 TTC36A6NLP5 189 aa6.96□□□□□ -1.3
VPS41-209ENST00000457055 AP3B2Q13367 1082 aa6.96□□□□□ -1.3
VPS41-209ENST00000457055 MYBPC2Q14324 1141 aa6.96□□□□□ -1.3
VPS41-209ENST00000457055 WDR78Q5VTH9 848 aa6.96□□□□□ -1.3
VPS41-209ENST00000457055 AGBL5Q8NDL9 886 aa6.96□□□□□ -1.3
VPS41-209ENST00000457055 LGR6Q9HBX8 967 aa6.96□□□□□ -1.3
VPS41-209ENST00000457055 ABCB6Q9NP58 842 aa6.96□□□□□ -1.3
VPS41-209ENST00000457055 SYNJ1O43426 1573 aa6.95□□□□□ -1.3
VPS41-209ENST00000457055 DYNC1LI2O43237 492 aaPredicted RBP6.95□□□□□ -1.3
VPS41-209ENST00000457055 PTPN12Q05209 780 aaKnown RBP6.95□□□□□ -1.3
VPS41-209ENST00000457055 PRPF40BQ6NWY9 871 aaKnown RBP6.95□□□□□ -1.3
VPS41-209ENST00000457055 SEZ6L2Q6UXD5 910 aa6.95□□□□□ -1.3
VPS41-209ENST00000457055 ANP32BQ92688 251 aaKnown RBP6.95□□□□□ -1.3
VPS41-209ENST00000457055 MTA3Q9BTC8 594 aa6.95□□□□□ -1.3
VPS41-209ENST00000457055 PAK6Q9NQU5 681 aaPredicted RBP6.95□□□□□ -1.3
VPS41-209ENST00000457055 C1GALT1Q9NS00 363 aa6.95□□□□□ -1.3
VPS41-209ENST00000457055 SNAPC4Q5SXM2 1469 aa6.94□□□□□ -1.3
VPS41-209ENST00000457055 RAD54L2Q9Y4B4 1467 aa6.94□□□□□ -1.3
VPS41-209ENST00000457055 EIF1AYO14602 144 aaKnown RBP6.94□□□□□ -1.3
VPS41-209ENST00000457055 NRDCO43847 1150 aa6.94□□□□□ -1.3
VPS41-209ENST00000457055 GADD45BO75293 160 aaPredicted RBP6.94□□□□□ -1.3
VPS41-209ENST00000457055 KRBA2Q6ZNG9 492 aa6.94□□□□□ -1.3
VPS41-209ENST00000457055 TMC1Q8TDI8 760 aa6.94□□□□□ -1.3
VPS41-209ENST00000457055 CCDC74AQ96AQ1 378 aa6.94□□□□□ -1.3
VPS41-209ENST00000457055 CITED4Q96RK1 184 aa6.94□□□□□ -1.3
VPS41-209ENST00000457055 DNAJC25Q9H1X3 360 aa6.94□□□□□ -1.3
VPS41-209ENST00000457055 MAGEC2Q9UBF1 373 aaPredicted RBP6.94□□□□□ -1.3
VPS41-209ENST00000457055 PPP1R9AQ9ULJ8 1098 aa6.94□□□□□ -1.3
VPS41-209ENST00000457055 SYNGAP1Q96PV0 1343 aa6.94□□□□□ -1.3
VPS41-209ENST00000457055 GPR182O15218 404 aa6.93□□□□□ -1.3
VPS41-209ENST00000457055 TMPRSS2O15393 492 aa6.93□□□□□ -1.3
VPS41-209ENST00000457055 RAB11FIP3O75154 756 aa6.93□□□□□ -1.3
VPS41-209ENST00000457055 LIG1P18858 919 aa6.93□□□□□ -1.3
VPS41-209ENST00000457055 ZNF157P51786 506 aaPredicted RBP6.93□□□□□ -1.3
VPS41-209ENST00000457055 COL19A1Q14993 1142 aa6.93□□□□□ -1.3
VPS41-209ENST00000457055 RPS26P11Q5JNZ5 115 aaPredicted RBP6.93□□□□□ -1.3
VPS41-209ENST00000457055 CCDC181Q5TID7 509 aa6.93□□□□□ -1.3
VPS41-209ENST00000457055 OGFOD3Q6PK18 319 aa6.93□□□□□ -1.3
VPS41-209ENST00000457055 CCER1Q8TC90 406 aaPredicted RBP6.93□□□□□ -1.3
VPS41-209ENST00000457055 TRIM44Q96DX7 344 aaPredicted RBP6.93□□□□□ -1.3
VPS41-209ENST00000457055 ASIC4Q96FT7 647 aa6.93□□□□□ -1.3
VPS41-209ENST00000457055 ZC3H12CQ9C0D7 883 aaKnown RBP6.93□□□□□ -1.3
VPS41-209ENST00000457055 NIF3L1Q9GZT8 377 aa6.93□□□□□ -1.3
VPS41-209ENST00000457055 PIDD1Q9HB75 910 aa6.93□□□□□ -1.3
VPS41-209ENST00000457055 PPP1R1BQ9UD71 204 aaPredicted RBP6.93□□□□□ -1.3
VPS41-209ENST00000457055 TRAK1Q9UPV9 953 aa6.93□□□□□ -1.3
VPS41-209ENST00000457055 TMEM238LA0A1B0GVL6 79 aa6.92□□□□□ -1.3
VPS41-209ENST00000457055 RBM47A0AV96 593 aaKnown RBP6.92□□□□□ -1.3
VPS41-209ENST00000457055 CCER2I3L3R5 266 aa6.92□□□□□ -1.3
VPS41-209ENST00000457055 PEX14O75381 377 aa6.92□□□□□ -1.3
VPS41-209ENST00000457055 TCF3P15923 654 aa6.92□□□□□ -1.3
VPS41-209ENST00000457055 ITGB5P18084 799 aa6.92□□□□□ -1.3
VPS41-209ENST00000457055 FAAP100Q0VG06 881 aa6.92□□□□□ -1.3
VPS41-209ENST00000457055 CYP27C1Q4G0S4 372 aa6.92□□□□□ -1.3
VPS41-209ENST00000457055 OGFOD2Q6N063 350 aa6.92□□□□□ -1.3
VPS41-209ENST00000457055 SMC5Q8IY18 1101 aa6.92□□□□□ -1.3
VPS41-209ENST00000457055 UBXN4Q92575 508 aa6.92□□□□□ -1.3
VPS41-209ENST00000457055 WDR89Q96FK6 387 aaPredicted RBP6.92□□□□□ -1.3
VPS41-209ENST00000457055 CCDC86Q9H6F5 360 aaKnown RBP6.92□□□□□ -1.3
VPS41-209ENST00000457055 SLC5A6Q9Y289 635 aa6.92□□□□□ -1.3
VPS41-209ENST00000457055 IGHA2P01877 340 aa6.91□□□□□ -1.3
VPS41-209ENST00000457055 JUNBP17275 347 aaPredicted RBP6.91□□□□□ -1.3
VPS41-209ENST00000457055 MMP14P50281 582 aa6.91□□□□□ -1.3
VPS41-209ENST00000457055 HNRNPUQ00839 825 aaKnown RBP eCLIP6.91□□□□□ -1.3
VPS41-209ENST00000457055 ID3Q02535 119 aa6.91□□□□□ -1.3
VPS41-209ENST00000457055 FOXD4Q12950 439 aaPredicted RBP6.91□□□□□ -1.3
VPS41-209ENST00000457055 CDK5R2Q13319 367 aa6.91□□□□□ -1.3
VPS41-209ENST00000457055 GRM2Q14416 872 aa6.91□□□□□ -1.3
VPS41-209ENST00000457055 STK11IPQ8N1F8 1099 aa6.91□□□□□ -1.3
VPS41-209ENST00000457055 BCL7CQ8WUZ0 217 aaPredicted RBP6.91□□□□□ -1.3
VPS41-209ENST00000457055 ATXN3LQ9H3M9 355 aa6.91□□□□□ -1.3
VPS41-209ENST00000457055 CRIM1Q9NZV1 1036 aa6.91□□□□□ -1.3
VPS41-209ENST00000457055 KRTAP4-8A0A0G2JLE6 195 aa6.9□□□□□ -1.3
VPS41-209ENST00000457055 SH3BP5O60239 455 aa6.9□□□□□ -1.3
VPS41-209ENST00000457055 SLFN14P0C7P3 912 aa6.9□□□□□ -1.3
VPS41-209ENST00000457055 FAM87AP0C7U9 286 aa6.9□□□□□ -1.3
VPS41-209ENST00000457055 ZFYVE27Q5T4F4 411 aa6.9□□□□□ -1.3
VPS41-209ENST00000457055 ZNF574Q6ZN55 896 aaPredicted RBP6.9□□□□□ -1.3
VPS41-209ENST00000457055 SND1Q7KZF4 910 aaKnown RBP eCLIP6.9□□□□□ -1.3
VPS41-209ENST00000457055 SDR16C5Q8N3Y7 309 aa6.9□□□□□ -1.3
VPS41-209ENST00000457055 GLIS3Q8NEA6 775 aa6.9□□□□□ -1.3
VPS41-209ENST00000457055 C8orf37Q96NL8 207 aa6.9□□□□□ -1.3
VPS41-209ENST00000457055 FANCD2OSQ96PS1 177 aa6.9□□□□□ -1.3
VPS41-209ENST00000457055 METTL14Q9HCE5 456 aaKnown RBP6.9□□□□□ -1.3
VPS41-209ENST00000457055 CREB3O43889 395 aa6.89□□□□□ -1.31
VPS41-209ENST00000457055 ZNF862O60290 1169 aa6.89□□□□□ -1.31
VPS41-209ENST00000457055 GSTP1P09211 210 aaKnown RBP6.89□□□□□ -1.31
VPS41-209ENST00000457055 PLCL1Q15111 1095 aa6.89□□□□□ -1.31
VPS41-209ENST00000457055 DTHD1Q6ZMT9 781 aa6.89□□□□□ -1.31
VPS41-209ENST00000457055 TXNDC2Q86VQ3 553 aa6.89□□□□□ -1.31
VPS41-209ENST00000457055 EPS8L3Q8TE67 593 aaKnown RBP6.89□□□□□ -1.31
VPS41-209ENST00000457055 MRRFQ96E11 262 aaKnown RBP6.89□□□□□ -1.31
VPS41-209ENST00000457055 DMRTB1Q96MA1 342 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms