RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 MAGEB6P1A0A0J9YX57 407 aa24.1■■□□□ 1.45
COL9A3-202ENST00000452372 MIGA2Q7L4E1 593 aa24.1■■□□□ 1.45
COL9A3-202ENST00000452372 ATRNL1Q5VV63 1379 aa24.1■■□□□ 1.45
COL9A3-202ENST00000452372 FOCADQ5VW36 1801 aa24.1■■□□□ 1.45
COL9A3-202ENST00000452372 COL2A1P02458 1487 aaPredicted RBP24.09■■□□□ 1.45
COL9A3-202ENST00000452372 CAP1Q01518 475 aa24.09■■□□□ 1.45
COL9A3-202ENST00000452372 CRHR2Q13324 411 aa24.09■■□□□ 1.45
COL9A3-202ENST00000452372 FBXO46Q6PJ61 603 aaPredicted RBP24.09■■□□□ 1.45
COL9A3-202ENST00000452372 BRI3BPQ8WY22 251 aa24.09■■□□□ 1.45
COL9A3-202ENST00000452372 ZNF341Q9BYN7 854 aa24.09■■□□□ 1.45
COL9A3-202ENST00000452372 MAP3K10Q02779 954 aa24.08■■□□□ 1.45
COL9A3-202ENST00000452372 SLFNL1Q499Z3 407 aa24.08■■□□□ 1.45
COL9A3-202ENST00000452372 MAPKAPK5Q8IW41 473 aa24.08■■□□□ 1.45
COL9A3-202ENST00000452372 SNCAIPQ9Y6H5 919 aa24.08■■□□□ 1.45
COL9A3-202ENST00000452372 FLT1P17948 1338 aa24.08■■□□□ 1.44
COL9A3-202ENST00000452372 PLEKHM2Q8IWE5 1019 aa24.07■■□□□ 1.44
COL9A3-202ENST00000452372 ZKSCAN4Q969J2 545 aaPredicted RBP24.07■■□□□ 1.44
COL9A3-202ENST00000452372 DHX36Q9H2U1 1008 aaKnown RBP24.07■■□□□ 1.44
COL9A3-202ENST00000452372 ZNF112Q9UJU3 913 aa24.07■■□□□ 1.44
COL9A3-202ENST00000452372 CHGBP05060 677 aa24.06■■□□□ 1.44
COL9A3-202ENST00000452372 OTUD7BQ6GQQ9 843 aa24.06■■□□□ 1.44
COL9A3-202ENST00000452372 WRNIP1Q96S55 665 aa24.06■■□□□ 1.44
COL9A3-202ENST00000452372 OSBPL3Q9H4L5 887 aa24.06■■□□□ 1.44
COL9A3-202ENST00000452372 SPDYE5A6NIY4 337 aa24.05■■□□□ 1.44
COL9A3-202ENST00000452372 RNF113AO15541 343 aaKnown RBP24.05■■□□□ 1.44
COL9A3-202ENST00000452372 TBC1D12O60347 775 aa24.05■■□□□ 1.44
COL9A3-202ENST00000452372 ZFYP08048 801 aaPredicted RBP24.05■■□□□ 1.44
COL9A3-202ENST00000452372 USP5P45974 858 aa24.05■■□□□ 1.44
COL9A3-202ENST00000452372 LRRFIP1Q32MZ4 808 aaKnown RBP24.05■■□□□ 1.44
COL9A3-202ENST00000452372 OTOP1Q7RTM1 612 aa24.05■■□□□ 1.44
COL9A3-202ENST00000452372 CRNKL1Q9BZJ0 848 aaKnown RBP24.05■■□□□ 1.44
COL9A3-202ENST00000452372 CSADQ9Y600 493 aa24.05■■□□□ 1.44
COL9A3-202ENST00000452372 LCORLQ8N3X6 602 aa24.04■■□□□ 1.44
COL9A3-202ENST00000452372 OTUD5Q96G74 571 aa24.04■■□□□ 1.44
COL9A3-202ENST00000452372 ARMT1Q9H993 441 aa24.04■■□□□ 1.44
COL9A3-202ENST00000452372 PI4KBQ9UBF8 816 aa24.04■■□□□ 1.44
COL9A3-202ENST00000452372 CENPFP49454 3210 aa24.03■■□□□ 1.44
COL9A3-202ENST00000452372 CCL15-CCL14A0A0B4J2E2 113 aa24.03■■□□□ 1.44
COL9A3-202ENST00000452372 MBD4O95243 580 aa24.03■■□□□ 1.44
COL9A3-202ENST00000452372 GTF2A2P52657 109 aa24.03■■□□□ 1.44
COL9A3-202ENST00000452372 CCL15Q16663 113 aa24.03■■□□□ 1.44
COL9A3-202ENST00000452372 FAM43AQ8N2R8 423 aa24.03■■□□□ 1.44
COL9A3-202ENST00000452372 EVI5LQ96CN4 794 aa24.03■■□□□ 1.44
COL9A3-202ENST00000452372 PUS7LQ9H0K6 701 aaKnown RBP24.03■■□□□ 1.44
COL9A3-202ENST00000452372 PALD1Q9ULE6 856 aa24.03■■□□□ 1.44
COL9A3-202ENST00000452372 TRIM17Q9Y577 477 aa24.03■■□□□ 1.44
COL9A3-202ENST00000452372 MYH1P12882 1939 aa24.02■■□□□ 1.44
COL9A3-202ENST00000452372 PHF20L1A8MW92 1017 aa24.02■■□□□ 1.44
COL9A3-202ENST00000452372 INPP5BP32019 993 aa24.02■■□□□ 1.44
COL9A3-202ENST00000452372 ERO1BQ86YB8 467 aa24.02■■□□□ 1.44
COL9A3-202ENST00000452372 CD99L2Q8TCZ2 262 aa24.02■■□□□ 1.44
COL9A3-202ENST00000452372 APPBP2Q92624 585 aa24.02■■□□□ 1.44
COL9A3-202ENST00000452372 FSD1Q9BTV5 496 aa24.02■■□□□ 1.44
COL9A3-202ENST00000452372 IRF6O14896 467 aa24.01■■□□□ 1.43
COL9A3-202ENST00000452372 NEFLP07196 543 aa24.01■■□□□ 1.43
COL9A3-202ENST00000452372 SLURP2P0DP57 97 aa24.01■■□□□ 1.43
COL9A3-202ENST00000452372 FOXP4Q8IVH2 680 aaPredicted RBP24.01■■□□□ 1.43
COL9A3-202ENST00000452372 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.01■■□□□ 1.43
COL9A3-202ENST00000452372 SAP30BPQ9UHR5 308 aaKnown RBP24.01■■□□□ 1.43
COL9A3-202ENST00000452372 HERC5Q9UII4 1024 aaKnown RBP24.01■■□□□ 1.43
COL9A3-202ENST00000452372 KIAA0100Q14667 2235 aaKnown RBP24■■□□□ 1.43
COL9A3-202ENST00000452372 PDE4AP27815 886 aa24■■□□□ 1.43
COL9A3-202ENST00000452372 SP3Q02447 781 aa24■■□□□ 1.43
COL9A3-202ENST00000452372 METTL16Q86W50 562 aaKnown RBP24■■□□□ 1.43
COL9A3-202ENST00000452372 TICAM2Q86XR7 235 aa24■■□□□ 1.43
COL9A3-202ENST00000452372 OSBP2Q969R2 916 aa24■■□□□ 1.43
COL9A3-202ENST00000452372 ERO1AQ96HE7 468 aa24■■□□□ 1.43
COL9A3-202ENST00000452372 NOL9Q5SY16 702 aaKnown RBP23.99■■□□□ 1.43
COL9A3-202ENST00000452372 SDR42E1Q8WUS8 393 aa23.99■■□□□ 1.43
COL9A3-202ENST00000452372 ATP8A2Q9NTI2 1148 aa23.99■■□□□ 1.43
COL9A3-202ENST00000452372 PTPN22Q9Y2R2 807 aa23.99■■□□□ 1.43
COL9A3-202ENST00000452372 SIPA1L1O43166 1804 aa23.98■■□□□ 1.43
COL9A3-202ENST00000452372 BTBD19C9JJ37 291 aa23.98■■□□□ 1.43
COL9A3-202ENST00000452372 PRKAB2O43741 272 aa23.98■■□□□ 1.43
COL9A3-202ENST00000452372 HLA-DOAP06340 250 aa23.98■■□□□ 1.43
COL9A3-202ENST00000452372 PPIL2Q13356 520 aa23.98■■□□□ 1.43
COL9A3-202ENST00000452372 TTC6Q86TZ1 520 aa23.98■■□□□ 1.43
COL9A3-202ENST00000452372 STRBPQ96SI9 672 aaKnown RBP23.98■■□□□ 1.43
COL9A3-202ENST00000452372 DCP1AQ9NPI6 582 aaPredicted RBP23.98■■□□□ 1.43
COL9A3-202ENST00000452372 FAM196BA6NMK8 535 aa23.97■■□□□ 1.43
COL9A3-202ENST00000452372 TRIM6-TRIM34B2RNG4 842 aa23.97■■□□□ 1.43
COL9A3-202ENST00000452372 CTNND1O60716 968 aaKnown RBP23.97■■□□□ 1.43
COL9A3-202ENST00000452372 CETPP11597 493 aa23.97■■□□□ 1.43
COL9A3-202ENST00000452372 TAF1CQ15572 869 aaPredicted RBP23.97■■□□□ 1.43
COL9A3-202ENST00000452372 ZMYM1Q5SVZ6 1142 aa23.97■■□□□ 1.43
COL9A3-202ENST00000452372 MCM9Q9NXL9 1143 aa23.97■■□□□ 1.43
COL9A3-202ENST00000452372 PPATQ06203 517 aa23.96■■□□□ 1.43
COL9A3-202ENST00000452372 CENPQQ7L2Z9 268 aaPredicted RBP23.96■■□□□ 1.43
COL9A3-202ENST00000452372 SCYL3Q8IZE3 742 aa23.96■■□□□ 1.43
COL9A3-202ENST00000452372 EHD4Q9H223 541 aa23.96■■□□□ 1.43
COL9A3-202ENST00000452372 EFCC1Q9HA90 598 aa23.96■■□□□ 1.43
COL9A3-202ENST00000452372 ZFYVE28Q9HCC9 887 aa23.96■■□□□ 1.43
COL9A3-202ENST00000452372 SLC4A4Q9Y6R1 1079 aa23.96■■□□□ 1.43
COL9A3-202ENST00000452372 NAV1Q8NEY1 1877 aa23.96■■□□□ 1.43
COL9A3-202ENST00000452372 POLR3DP05423 398 aaPredicted RBP23.95■■□□□ 1.42
COL9A3-202ENST00000452372 SNAPC2Q13487 334 aa23.95■■□□□ 1.42
COL9A3-202ENST00000452372 SLC4A8Q2Y0W8 1093 aa23.95■■□□□ 1.42
COL9A3-202ENST00000452372 CRACR2BQ8N4Y2 399 aaPredicted RBP23.95■■□□□ 1.42
COL9A3-202ENST00000452372 TRIM34Q9BYJ4 488 aa23.95■■□□□ 1.42
COL9A3-202ENST00000452372 DDX60LQ5H9U9 1706 aaKnown RBP23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms