RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 ANO6Q4KMQ2 910 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 JAKMIP3Q5VZ66 844 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 FAM114A1Q8IWE2 563 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 RASEFQ8IZ41 740 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 CELF1Q92879 486 aaKnown RBP8.42□□□□□ -1.06
SYNE1-213ENST00000448038 OSBP2Q969R2 916 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 NFIXQ14938 502 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 ANO1Q5XXA6 986 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 NAP1L4Q99733 375 aaKnown RBP8.42□□□□□ -1.06
SYNE1-213ENST00000448038 PUS7LQ9H0K6 701 aaKnown RBP8.42□□□□□ -1.06
SYNE1-213ENST00000448038 CERKLQ49MI3 558 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-213ENST00000448038 CPXCR1Q8N123 301 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 NUP88Q99567 741 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-213ENST00000448038 GLT8D2Q9H1C3 349 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 PIH1D3Q9NQM4 214 aaKnown RBP8.42□□□□□ -1.06
SYNE1-213ENST00000448038 TPCN1Q9ULQ1 816 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 CEMIPQ8WUJ3 1361 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 CYP21A2P08686 494 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 MAP2P11137 1827 aaKnown RBP8.42□□□□□ -1.06
SYNE1-213ENST00000448038 MCAMP43121 646 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 NKX1-1Q15270 411 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-213ENST00000448038 ARHGAP29Q52LW3 1261 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 DALRD3Q5D0E6 543 aaKnown RBP8.42□□□□□ -1.06
SYNE1-213ENST00000448038 RC3H1Q5TC82 1133 aaKnown RBP8.42□□□□□ -1.06
SYNE1-213ENST00000448038 MED23Q9ULK4 1368 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 KCNJ14Q9UNX9 436 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 RAD17O75943 681 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 PCP11498 1178 aaKnown RBP8.42□□□□□ -1.06
SYNE1-213ENST00000448038 ARID4AP29374 1257 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-213ENST00000448038 FOXO4P98177 505 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 ADCK5Q3MIX3 580 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 PNMA1Q8ND90 353 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 PLIN2Q99541 437 aa8.42□□□□□ -1.06
SYNE1-213ENST00000448038 A0A1B0GVL5 298 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 CLRN2A0PK11 232 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 ADCY5O95622 1261 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 CETN1Q12798 172 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 LCORLQ8N3X6 602 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 IQUBQ8NA54 791 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 PRKAB2O43741 272 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 C21orf2O43822 256 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 ENOX2Q16206 610 aaKnown RBP8.41□□□□□ -1.06
SYNE1-213ENST00000448038 UVSSAQ2YD98 709 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 USH1GQ495M9 461 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 CDC37L1Q7L3B6 337 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 CMTR1Q8N1G2 835 aaKnown RBP8.41□□□□□ -1.06
SYNE1-213ENST00000448038 FANCBQ8NB91 859 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 COA1Q9GZY4 146 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 VPS54Q9P1Q0 977 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 ADD1P35611 737 aaKnown RBP8.41□□□□□ -1.06
SYNE1-213ENST00000448038 ADCY7P51828 1080 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 SPA17Q15506 151 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 TMC6Q7Z403 805 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 LINC00116Q8NCU8 138 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.41□□□□□ -1.06
SYNE1-213ENST00000448038 BICD1Q96G01 975 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 PSMA7O14818 248 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 CCNT1O60563 726 aaKnown RBP8.41□□□□□ -1.06
SYNE1-213ENST00000448038 DIXDC1Q155Q3 683 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 RTKN2Q8IZC4 609 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 DNAJC25Q9H1X3 360 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 ESPNB1AK53 854 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 PFKFB2O60825 505 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 ZBTB7AO95365 584 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 SP4Q02446 784 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 MECOMQ03112 1051 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 TTC38Q5R3I4 469 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 DCAF15Q66K64 600 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 LRRC47Q8N1G4 583 aaKnown RBP8.41□□□□□ -1.06
SYNE1-213ENST00000448038 PKD2L1Q9P0L9 805 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 ZBTB21Q9ULJ3 1066 aa8.41□□□□□ -1.06
SYNE1-213ENST00000448038 N4BP3O15049 544 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 ZBED4O75132 1171 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 ITPK1Q13572 414 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 NONOQ15233 471 aaKnown RBP eCLIP8.4□□□□□ -1.06
SYNE1-213ENST00000448038 HSP90AA4PQ58FG1 418 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 CCDC181Q5TID7 509 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 FAM200AQ8TCP9 573 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 RUFY1Q96T51 708 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 IQSEC2Q5JU85 1478 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 POTEJP0CG39 1038 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 KRT25Q7Z3Z0 450 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 CSADQ9Y600 493 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 USP17L3A6NCW0 530 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 USP17L4A6NCW7 530 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 YEATS4O95619 227 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 ICA1Q05084 483 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 CCDC174Q6PII3 467 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 USP17L1Q7RTZ2 530 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 VPS36Q86VN1 386 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 CCDC150Q8NCX0 1101 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 KIFC2Q96AC6 838 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 PIM2Q9P1W9 311 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 MYO5BQ9ULV0 1848 aa8.4□□□□□ -1.06
SYNE1-213ENST00000448038 ZMYM6O95789 1325 aa8.4□□□□□ -1.07
SYNE1-213ENST00000448038 KIF20BQ96Q89 1820 aa8.4□□□□□ -1.07
SYNE1-213ENST00000448038 TRIM21P19474 475 aaKnown RBP8.4□□□□□ -1.07
SYNE1-213ENST00000448038 TYRO3Q06418 890 aa8.4□□□□□ -1.07
SYNE1-213ENST00000448038 TDRD12Q587J7 1177 aaKnown RBP8.4□□□□□ -1.07
SYNE1-213ENST00000448038 CHURC1Q8WUH1 139 aa8.4□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms