RNA–Protein interactions for RNA: ENST00000416321.5

DEPDC4-203, Transcript of DEP domain containing 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene DEPDC4, Length 1,155 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-203ENST00000416321 GJA3Q9Y6H8 435 aa11.98□□□□□ -0.49
DEPDC4-203ENST00000416321 CDK5RAP2Q96SN8 1893 aa11.97□□□□□ -0.49
DEPDC4-203ENST00000416321 RANBP6O60518 1105 aaKnown RBP11.97□□□□□ -0.49
DEPDC4-203ENST00000416321 KDM4AO75164 1064 aa11.97□□□□□ -0.49
DEPDC4-203ENST00000416321 CYP2D6P10635 497 aa11.97□□□□□ -0.49
DEPDC4-203ENST00000416321 TMEM87BQ96K49 555 aa11.97□□□□□ -0.49
DEPDC4-203ENST00000416321 LARP6Q9BRS8 491 aaKnown RBP11.97□□□□□ -0.49
DEPDC4-203ENST00000416321 MKNK2Q9HBH9 465 aa11.97□□□□□ -0.49
DEPDC4-203ENST00000416321 FOCADQ5VW36 1801 aa11.97□□□□□ -0.49
DEPDC4-203ENST00000416321 MYH1P12882 1939 aa11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 ECM29Q5VYK3 1845 aa11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 FZD9O00144 591 aa11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 IFIT3O14879 490 aaKnown RBP11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 ORC4O43929 436 aa11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 WDHD1O75717 1129 aaPredicted RBP11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 TOB2Q14106 344 aaPredicted RBP11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 GPR162Q16538 588 aa11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 TMEM67Q5HYA8 995 aa11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 CHADLQ6NUI6 762 aa11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 SYNE3Q6ZMZ3 975 aa11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 NFXL1Q6ZNB6 911 aa11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 IQCA1Q86XH1 822 aa11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 ZNF444Q8N0Y2 327 aaPredicted RBP11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 INTS4Q96HW7 963 aaKnown RBP11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 GMLQ99445 158 aa11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 TRIM34Q9BYJ4 488 aa11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 OSBPL5Q9H0X9 879 aaPredicted RBP11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 CWC22Q9HCG8 908 aaKnown RBP11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 MKRN1Q9UHC7 482 aaKnown RBP11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 ANGEL1Q9UNK9 670 aaKnown RBP11.96□□□□□ -0.49
DEPDC4-203ENST00000416321 ROBO3Q96MS0 1386 aa11.95□□□□□ -0.5
DEPDC4-203ENST00000416321 CCDC69A6NI79 296 aa11.95□□□□□ -0.5
DEPDC4-203ENST00000416321 TSPY2A6NKD2 308 aa11.95□□□□□ -0.5
DEPDC4-203ENST00000416321 PRDM1O75626 825 aa11.95□□□□□ -0.5
DEPDC4-203ENST00000416321 APOBRQ0VD83 1088 aa11.95□□□□□ -0.5
DEPDC4-203ENST00000416321 CUL4AQ13619 759 aa11.95□□□□□ -0.5
DEPDC4-203ENST00000416321 CYB5R4Q7L1T6 521 aa11.95□□□□□ -0.5
DEPDC4-203ENST00000416321 CCDC83Q8IWF9 413 aa11.95□□□□□ -0.5
DEPDC4-203ENST00000416321 ZSCAN29Q8IWY8 852 aaPredicted RBP11.95□□□□□ -0.5
DEPDC4-203ENST00000416321 PLCD3Q8N3E9 789 aa11.95□□□□□ -0.5
DEPDC4-203ENST00000416321 FBXL16Q8N461 479 aa11.95□□□□□ -0.5
DEPDC4-203ENST00000416321 MTA3Q9BTC8 594 aa11.95□□□□□ -0.5
DEPDC4-203ENST00000416321 DHX36Q9H2U1 1008 aaKnown RBP11.95□□□□□ -0.5
DEPDC4-203ENST00000416321 TDRD3Q9H7E2 651 aaKnown RBP11.95□□□□□ -0.5
DEPDC4-203ENST00000416321 INCENPQ9NQS7 918 aa11.95□□□□□ -0.5
DEPDC4-203ENST00000416321 TPCN1Q9ULQ1 816 aa11.95□□□□□ -0.5
DEPDC4-203ENST00000416321 DICER1Q9UPY3 1922 aaKnown RBP11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 KLF18A0A0U1RQI7 1052 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 SH2B2O14492 632 aaPredicted RBP11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 FGRP09769 529 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 GMPSP49915 693 aaPredicted RBP11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 ANTXR2P58335 489 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 TCP10Q12799 353 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 STK3Q13188 491 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 WTAPQ15007 396 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 ME3Q16798 604 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 CCDC178Q5BJE1 867 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 TMTC2Q8N394 836 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 CRACR2BQ8N4Y2 399 aaPredicted RBP11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 MTMR14Q8NCE2 650 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 DPF2Q92785 391 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 PRMT6Q96LA8 375 aaPredicted RBP11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 IDI2Q9BXS1 227 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 AGXT2Q9BYV1 514 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 VEZTQ9HBM0 779 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 MYOZ2Q9NPC6 264 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 CHMP5Q9NZZ3 219 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 RNF181Q9P0P0 153 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 ZSWIM5Q9P217 1185 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 SWAP70Q9UH65 585 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 CIZ1Q9ULV3 898 aaPredicted RBP11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 SMC3Q9UQE7 1217 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 PCDHAC2Q9Y5I4 1007 aa11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 DDX60LQ5H9U9 1706 aaKnown RBP11.94□□□□□ -0.5
DEPDC4-203ENST00000416321 ZNF541Q9H0D2 1346 aa11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 CLRN2A0PK11 232 aa11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 GOLGA8BA8MQT2 603 aa11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 H7C1D1 291 aa11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 SOCS7O14512 581 aa11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 DHX16O60231 1041 aaKnown RBP11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 GRIN3BO60391 1043 aa11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 ENTPD3O75355 529 aa11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 TSPY3P0CV98 308 aa11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 TSPY8P0CW00 308 aa11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 YBX3P16989 372 aaKnown RBP eCLIP11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 TNNI2P48788 182 aa11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 PLCD1P51178 756 aa11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 PRELPP51888 382 aa11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 CACNB3P54284 484 aa11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 NFIAQ12857 509 aa11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 COL9A3Q14050 684 aaPredicted RBP11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 MICALL2Q8IY33 904 aa11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 NECAB1Q8N987 351 aa11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 DYNLL2Q96FJ2 89 aa11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 ZNF274Q96GC6 653 aaPredicted RBP11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 ZKSCAN3Q9BRR0 538 aa11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 DDX4Q9NQI0 724 aaKnown RBP11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 SERPINB13Q9UIV8 391 aa11.93□□□□□ -0.5
DEPDC4-203ENST00000416321 SLC12A7Q9Y666 1083 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms