RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 FNBP1Q96RU3 617 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 KCNK9Q9NPC2 374 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 DDX21Q9NR30 783 aaKnown RBP eCLIP6.78□□□□□ -1.32
SCN1A-203ENST00000409050 KCNH3Q9ULD8 1083 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 BZW2Q9Y6E2 419 aaKnown RBP6.78□□□□□ -1.32
SCN1A-203ENST00000409050 ADGRF5Q8IZF2 1346 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 CCDC184Q52MB2 194 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 CEP85LQ5SZL2 805 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 MPRIPQ6WCQ1 1025 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 PLEKHM2Q8IWE5 1019 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 MRFAP1L1Q96HT8 127 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 SETDB2Q96T68 719 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 ZMYND15Q9H091 742 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 HAUS4Q9H6D7 363 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 ACEP12821 1306 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 EFCAB8A8MWE9 144 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 SPOPO43791 374 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 PTCD1O75127 700 aaKnown RBP6.78□□□□□ -1.32
SCN1A-203ENST00000409050 RFC4P35249 363 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 ZC3H6P61129 1189 aaKnown RBP6.78□□□□□ -1.32
SCN1A-203ENST00000409050 UBLCP1Q8WVY7 318 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-203ENST00000409050 CACYBPQ9HB71 228 aaKnown RBP6.78□□□□□ -1.32
SCN1A-203ENST00000409050 METTL14Q9HCE5 456 aaKnown RBP6.78□□□□□ -1.32
SCN1A-203ENST00000409050 ANGEL1Q9UNK9 670 aaKnown RBP6.78□□□□□ -1.32
SCN1A-203ENST00000409050 KDM2BQ8NHM5 1336 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 PPFIA2O75334 1257 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 FANCCQ00597 558 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 ASPHQ12797 758 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 HHATQ5VTY9 493 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 NSMCE1Q8WV22 266 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 SPZ1Q9BXG8 430 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 PRDM10Q9NQV6 1147 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 TACC3Q9Y6A5 838 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 DISP3Q9P2K9 1392 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 ZMYM4Q5VZL5 1548 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 ABCC10Q5T3U5 1492 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 PTGS1P23219 599 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 HACE1Q8IYU2 909 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 RETREG2Q8NC44 543 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 FAM71BQ8TC56 605 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 GDPD2Q9HCC8 539 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 RTEL1Q9NZ71 1219 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 GPATCH8Q9UKJ3 1502 aaKnown RBP6.78□□□□□ -1.32
SCN1A-203ENST00000409050 VAMP4O75379 141 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 RBM6P78332 1123 aaKnown RBP6.77□□□□□ -1.33
SCN1A-203ENST00000409050 SEMA3FQ13275 785 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 RPS6KA1Q15418 735 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 VSIG1Q86XK7 387 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 MEIS3Q99687 375 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 EIF2AQ9BY44 585 aaKnown RBP6.77□□□□□ -1.33
SCN1A-203ENST00000409050 KDM5DQ9BY66 1539 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 PCDH11XQ9BZA7 1347 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 PCDH11YQ9BZA8 1340 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 PLXNC1O60486 1568 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 LAD1O00515 517 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 TSC1Q92574 1164 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 TRIM11Q96F44 468 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 CSRNP1Q96S65 589 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 ARHGEF10LQ9HCE6 1279 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 SPDYE4A6NLX3 237 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 hCG_1984214I3L0E3 225 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 NONOQ15233 471 aaKnown RBP eCLIP6.77□□□□□ -1.33
SCN1A-203ENST00000409050 ANKRD20A3Q5VUR7 823 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 LMBR1LQ6UX01 489 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 SUPT20HQ8NEM7 779 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 XAGE3Q8WTP9 111 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 SIRT1Q96EB6 747 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 ZNF274Q96GC6 653 aaPredicted RBP6.77□□□□□ -1.33
SCN1A-203ENST00000409050 THUMPD2Q9BTF0 503 aaKnown RBP6.77□□□□□ -1.33
SCN1A-203ENST00000409050 HYOU1Q9Y4L1 999 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 A2MP01023 1474 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 TRAF5O00463 557 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 MGEA5O60502 916 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 LDHBP07195 334 aaKnown RBP6.77□□□□□ -1.33
SCN1A-203ENST00000409050 MAGEA1P43355 309 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 STRN3Q13033 797 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 IDI1Q13907 227 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 NAA25Q14CX7 972 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 GKAP1Q5VSY0 366 aaPredicted RBP6.77□□□□□ -1.33
SCN1A-203ENST00000409050 SDCCAG8Q86SQ7 713 aaPredicted RBP6.77□□□□□ -1.33
SCN1A-203ENST00000409050 ZNF710Q8N1W2 664 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 CCHCR1Q8TD31 782 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 TBC1D22AQ8WUA7 517 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 TCHPQ9BT92 498 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 ZBTB3Q9H5J0 574 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 ZSWIM4Q9H7M6 989 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 EDC4Q6P2E9 1401 aaKnown RBP6.77□□□□□ -1.33
SCN1A-203ENST00000409050 RIMS2Q9UQ26 1411 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 CCDC169A6NNP5 214 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 E7EVH7 732 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 ZEB2O60315 1214 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 CRCPO75575 148 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 DNM2P50570 870 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 ZNF131P52739 623 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 PLBD2Q8NHP8 589 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 IFT81Q8WYA0 676 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 PCDHB15Q9Y5E8 787 aa6.77□□□□□ -1.33
SCN1A-203ENST00000409050 COL17A1Q9UMD9 1497 aaPredicted RBP6.77□□□□□ -1.33
SCN1A-203ENST00000409050 RAPGEF6Q8TEU7 1601 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 EYA2O00167 538 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 134.9 ms