RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 ANKRD44Q8N8A2 993 aa15.83■□□□□ 0.12
COL7A1-201ENST00000328333 KRT15P19012 456 aa15.83■□□□□ 0.12
COL7A1-201ENST00000328333 UAP1Q16222 522 aaPredicted RBP15.83■□□□□ 0.12
COL7A1-201ENST00000328333 HEATR3Q7Z4Q2 680 aa15.83■□□□□ 0.12
COL7A1-201ENST00000328333 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.82■□□□□ 0.12
COL7A1-201ENST00000328333 PPANQ9NQ55 473 aaKnown RBP15.82■□□□□ 0.12
COL7A1-201ENST00000328333 EXOC7Q9UPT5 735 aa15.82■□□□□ 0.12
COL7A1-201ENST00000328333 TXNDC9O14530 226 aa15.82■□□□□ 0.12
COL7A1-201ENST00000328333 U2AF2P26368 475 aaKnown RBP eCLIP15.82■□□□□ 0.12
COL7A1-201ENST00000328333 MCM7P33993 719 aa15.82■□□□□ 0.12
COL7A1-201ENST00000328333 C8orf34Q49A92 452 aa15.82■□□□□ 0.12
COL7A1-201ENST00000328333 SKIP12755 728 aa15.82■□□□□ 0.12
COL7A1-201ENST00000328333 KIF11P52732 1056 aa15.82■□□□□ 0.12
COL7A1-201ENST00000328333 TRIM68Q6AZZ1 485 aa15.82■□□□□ 0.12
COL7A1-201ENST00000328333 BBOF1Q8ND07 529 aa15.82■□□□□ 0.12
COL7A1-201ENST00000328333 CCHCR1Q8TD31 782 aa15.82■□□□□ 0.12
COL7A1-201ENST00000328333 ZNF354CQ86Y25 554 aa15.82■□□□□ 0.12
COL7A1-201ENST00000328333 PAK1Q13153 545 aa15.82■□□□□ 0.12
COL7A1-201ENST00000328333 RPS6KA1Q15418 735 aa15.82■□□□□ 0.12
COL7A1-201ENST00000328333 DHX58Q96C10 678 aa15.82■□□□□ 0.12
COL7A1-201ENST00000328333 EFHD1Q9BUP0 239 aa15.82■□□□□ 0.12
COL7A1-201ENST00000328333 TMEM110-MUSTN1A8MSY1 372 aa15.82■□□□□ 0.12
COL7A1-201ENST00000328333 MAN1A2O60476 641 aa15.81■□□□□ 0.12
COL7A1-201ENST00000328333 TBC1D8BQ0IIM8 1120 aa15.81■□□□□ 0.12
COL7A1-201ENST00000328333 PEX26Q7Z412 305 aa15.81■□□□□ 0.12
COL7A1-201ENST00000328333 GFM2Q969S9 779 aaKnown RBP15.81■□□□□ 0.12
COL7A1-201ENST00000328333 MCM10Q7L590 875 aa15.81■□□□□ 0.12
COL7A1-201ENST00000328333 TRIM42Q8IWZ5 723 aa15.81■□□□□ 0.12
COL7A1-201ENST00000328333 HELBQ8NG08 1087 aaPredicted RBP15.81■□□□□ 0.12
COL7A1-201ENST00000328333 MAP3K7CLP57077 242 aa15.81■□□□□ 0.12
COL7A1-201ENST00000328333 RASIP1Q5U651 963 aa15.81■□□□□ 0.12
COL7A1-201ENST00000328333 WWC3Q9ULE0 1092 aa15.81■□□□□ 0.12
COL7A1-201ENST00000328333 KDM2BQ8NHM5 1336 aa15.81■□□□□ 0.12
COL7A1-201ENST00000328333 CUTAO60888 179 aa15.81■□□□□ 0.12
COL7A1-201ENST00000328333 ALDH1L1O75891 902 aa15.81■□□□□ 0.12
COL7A1-201ENST00000328333 CUL4BQ13620 913 aa15.81■□□□□ 0.12
COL7A1-201ENST00000328333 RRS1Q15050 365 aaKnown RBP15.81■□□□□ 0.12
COL7A1-201ENST00000328333 ARHGAP42A6NI28 874 aa15.81■□□□□ 0.12
COL7A1-201ENST00000328333 BAG5Q9UL15 447 aa15.81■□□□□ 0.12
COL7A1-201ENST00000328333 CCDC93Q567U6 631 aa15.8■□□□□ 0.12
COL7A1-201ENST00000328333 RILPQ96NA2 401 aa15.8■□□□□ 0.12
COL7A1-201ENST00000328333 MAGI1Q96QZ7 1491 aaPredicted RBP15.8■□□□□ 0.12
COL7A1-201ENST00000328333 INSRP06213 1382 aa15.8■□□□□ 0.12
COL7A1-201ENST00000328333 LMNB1P20700 586 aa15.8■□□□□ 0.12
COL7A1-201ENST00000328333 ASIC2Q16515 512 aa15.8■□□□□ 0.12
COL7A1-201ENST00000328333 PPP1R21Q6ZMI0 780 aa15.8■□□□□ 0.12
COL7A1-201ENST00000328333 RHPN1Q8TCX5 695 aa15.8■□□□□ 0.12
COL7A1-201ENST00000328333 CTNND2Q9UQB3 1225 aa15.8■□□□□ 0.12
COL7A1-201ENST00000328333 PIK3C2GO75747 1445 aa15.8■□□□□ 0.12
COL7A1-201ENST00000328333 CDAN1Q8IWY9 1227 aa15.8■□□□□ 0.12
COL7A1-201ENST00000328333 PSDA5PKW4 1024 aaPredicted RBP15.8■□□□□ 0.12
COL7A1-201ENST00000328333 IL15P40933 162 aaPredicted RBP15.8■□□□□ 0.12
COL7A1-201ENST00000328333 UBE3BQ7Z3V4 1068 aa15.8■□□□□ 0.12
COL7A1-201ENST00000328333 LZTS2Q9BRK4 669 aa15.8■□□□□ 0.12
COL7A1-201ENST00000328333 CTTNBP2NLQ9P2B4 639 aa15.8■□□□□ 0.12
COL7A1-201ENST00000328333 NLRP7Q8WX94 980 aa15.8■□□□□ 0.12
COL7A1-201ENST00000328333 KCNH3Q9ULD8 1083 aa15.8■□□□□ 0.12
COL7A1-201ENST00000328333 MYD88Q99836 296 aa15.8■□□□□ 0.12
COL7A1-201ENST00000328333 PAG1Q9NWQ8 432 aa15.8■□□□□ 0.12
COL7A1-201ENST00000328333 EXOC4Q96A65 974 aa15.8■□□□□ 0.12
COL7A1-201ENST00000328333 MAP3K2Q9Y2U5 619 aa15.8■□□□□ 0.12
COL7A1-201ENST00000328333 PHEXP78562 749 aa15.79■□□□□ 0.12
COL7A1-201ENST00000328333 HAUS7Q99871 368 aa15.79■□□□□ 0.12
COL7A1-201ENST00000328333 NAA16Q6N069 864 aaPredicted RBP15.79■□□□□ 0.12
COL7A1-201ENST00000328333 CCT6AP40227 531 aaKnown RBP15.79■□□□□ 0.12
COL7A1-201ENST00000328333 CCDC105Q8IYK2 499 aa15.79■□□□□ 0.12
COL7A1-201ENST00000328333 ACTR5Q9H9F9 607 aaPredicted RBP15.79■□□□□ 0.12
COL7A1-201ENST00000328333 TRMT112Q9UI30 125 aaKnown RBP15.79■□□□□ 0.12
COL7A1-201ENST00000328333 POLR1AO95602 1720 aaPredicted RBP15.79■□□□□ 0.12
COL7A1-201ENST00000328333 MIS12Q9H081 205 aa15.79■□□□□ 0.12
COL7A1-201ENST00000328333 CCDC8Q9H0W5 538 aaPredicted RBP15.79■□□□□ 0.12
COL7A1-201ENST00000328333 RIC8AQ9NPQ8 531 aa15.79■□□□□ 0.12
COL7A1-201ENST00000328333 SATB2Q9UPW6 733 aa15.79■□□□□ 0.12
COL7A1-201ENST00000328333 MYH6P13533 1939 aa15.79■□□□□ 0.12
COL7A1-201ENST00000328333 WDR46O15213 610 aaKnown RBP15.79■□□□□ 0.12
COL7A1-201ENST00000328333 LMNAP02545 664 aaKnown RBP15.78■□□□□ 0.12
COL7A1-201ENST00000328333 TXNDC2Q86VQ3 553 aa15.78■□□□□ 0.12
COL7A1-201ENST00000328333 YWHAEP62258 255 aaKnown RBP15.78■□□□□ 0.12
COL7A1-201ENST00000328333 FANCCQ00597 558 aa15.78■□□□□ 0.12
COL7A1-201ENST00000328333 DDX21Q9NR30 783 aaKnown RBP eCLIP15.78■□□□□ 0.12
COL7A1-201ENST00000328333 ZNF526Q8TF50 670 aaPredicted RBP15.78■□□□□ 0.12
COL7A1-201ENST00000328333 SLC12A2P55011 1212 aa15.78■□□□□ 0.12
COL7A1-201ENST00000328333 DCAF17Q5H9S7 520 aaPredicted RBP15.78■□□□□ 0.12
COL7A1-201ENST00000328333 APOBRQ0VD83 1088 aa15.78■□□□□ 0.12
COL7A1-201ENST00000328333 TRAF5O00463 557 aa15.78■□□□□ 0.12
COL7A1-201ENST00000328333 CCDC197Q8NCU1 140 aa15.78■□□□□ 0.12
COL7A1-201ENST00000328333 KRT12Q99456 494 aa15.78■□□□□ 0.12
COL7A1-201ENST00000328333 AMOTL2Q9Y2J4 779 aa15.78■□□□□ 0.12
COL7A1-201ENST00000328333 DEXIO95424 95 aa15.77■□□□□ 0.12
COL7A1-201ENST00000328333 PARD3Q8TEW0 1356 aa15.77■□□□□ 0.12
COL7A1-201ENST00000328333 RAD54L2Q9Y4B4 1467 aa15.77■□□□□ 0.12
COL7A1-201ENST00000328333 THAP12O43422 761 aa15.77■□□□□ 0.12
COL7A1-201ENST00000328333 TBC1D8O95759 1140 aa15.77■□□□□ 0.12
COL7A1-201ENST00000328333 HSP90AA4PQ58FG1 418 aa15.77■□□□□ 0.12
COL7A1-201ENST00000328333 SFMBT2Q5VUG0 894 aa15.77■□□□□ 0.12
COL7A1-201ENST00000328333 KLHDC4Q8TBB5 520 aa15.77■□□□□ 0.12
COL7A1-201ENST00000328333 PFDN6O15212 129 aa15.77■□□□□ 0.12
COL7A1-201ENST00000328333 GJC1P36383 396 aa15.77■□□□□ 0.12
COL7A1-201ENST00000328333 TEKT1Q969V4 418 aa15.77■□□□□ 0.12
COL7A1-201ENST00000328333 CDC25BP30305 580 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms