RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 CRACR2BQ8N4Y2 399 aaPredicted RBP18.26■□□□□ 0.51
PDLIM5-202ENST00000318007 ZKSCAN3Q9BRR0 538 aa18.26■□□□□ 0.51
PDLIM5-202ENST00000318007 DEFB129Q9H1M3 183 aa18.26■□□□□ 0.51
PDLIM5-202ENST00000318007 LAMA4Q16363 1823 aa18.25■□□□□ 0.51
PDLIM5-202ENST00000318007 HLA-DOAP06340 250 aa18.25■□□□□ 0.51
PDLIM5-202ENST00000318007 FAM47AQ5JRC9 791 aa18.25■□□□□ 0.51
PDLIM5-202ENST00000318007 AKNAD1Q5T1N1 836 aa18.25■□□□□ 0.51
PDLIM5-202ENST00000318007 RALYLQ86SE5 291 aaKnown RBP18.25■□□□□ 0.51
PDLIM5-202ENST00000318007 NEK1Q96PY6 1258 aa18.25■□□□□ 0.51
PDLIM5-202ENST00000318007 RANBP6O60518 1105 aaKnown RBP18.24■□□□□ 0.51
PDLIM5-202ENST00000318007 NEK4P51957 841 aa18.24■□□□□ 0.51
PDLIM5-202ENST00000318007 PRKG1Q13976 671 aa18.24■□□□□ 0.51
PDLIM5-202ENST00000318007 EPB41L2O43491 1005 aaKnown RBP18.24■□□□□ 0.51
PDLIM5-202ENST00000318007 KDM4AO75164 1064 aa18.24■□□□□ 0.51
PDLIM5-202ENST00000318007 TNNI2P48788 182 aa18.24■□□□□ 0.51
PDLIM5-202ENST00000318007 TRDNQ13061 729 aa18.24■□□□□ 0.51
PDLIM5-202ENST00000318007 TTC6Q86TZ1 520 aa18.24■□□□□ 0.51
PDLIM5-202ENST00000318007 FAM151AQ8WW52 585 aa18.24■□□□□ 0.51
PDLIM5-202ENST00000318007 DCPSQ96C86 337 aaKnown RBP18.24■□□□□ 0.51
PDLIM5-202ENST00000318007 TRIM34Q9BYJ4 488 aa18.24■□□□□ 0.51
PDLIM5-202ENST00000318007 MKNK2Q9HBH9 465 aa18.24■□□□□ 0.51
PDLIM5-202ENST00000318007 SERPINB13Q9UIV8 391 aa18.24■□□□□ 0.51
PDLIM5-202ENST00000318007 ENTPD3O75355 529 aa18.23■□□□□ 0.51
PDLIM5-202ENST00000318007 TNFAIP1Q13829 316 aa18.23■□□□□ 0.51
PDLIM5-202ENST00000318007 SHROOM1Q2M3G4 852 aaPredicted RBP18.23■□□□□ 0.51
PDLIM5-202ENST00000318007 SBK1Q52WX2 424 aa18.23■□□□□ 0.51
PDLIM5-202ENST00000318007 POLR2AP24928 1970 aaKnown RBP18.23■□□□□ 0.51
PDLIM5-202ENST00000318007 CD2BP2O95400 341 aaKnown RBP18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 MMP14P50281 582 aa18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 NBPF12Q5TAG4 269 aaPredicted RBP18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 MAP1SQ66K74 1059 aaPredicted RBP18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 BLOC1S2Q6QNY1 142 aa18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 USP50Q70EL3 339 aaPredicted RBP18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 NCOA7Q8NI08 942 aa18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 STAG1Q8WVM7 1258 aa18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 DNAJC18Q9H819 358 aa18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 WDR90Q96KV7 1748 aa18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 SLC3A2P08195 630 aaKnown RBP18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 VEGFAP15692 232 aaPredicted RBP18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 CDK8P49336 464 aa18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 ANAPC15P60006 121 aa18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 PDE4BQ07343 736 aa18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 CYB5R4Q7L1T6 521 aa18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 KRT26Q7Z3Y9 468 aa18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 SULF1Q8IWU6 871 aa18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 KCNB2Q92953 911 aa18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 CHMP4CQ96CF2 233 aa18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 GPHNQ9NQX3 736 aaPredicted RBP18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 PI4KBQ9UBF8 816 aa18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 SCN4AP35499 1836 aa18.22■□□□□ 0.51
PDLIM5-202ENST00000318007 NMT2O60551 498 aa18.21■□□□□ 0.51
PDLIM5-202ENST00000318007 FMR1Q06787 632 aaKnown RBP eCLIP18.21■□□□□ 0.513e-9■■■■■ 33
PDLIM5-202ENST00000318007 KRT32Q14532 448 aa18.21■□□□□ 0.51
PDLIM5-202ENST00000318007 APOBEC3FQ8IUX4 373 aaKnown RBP18.21■□□□□ 0.51
PDLIM5-202ENST00000318007 GLIS2Q9BZE0 524 aaPredicted RBP18.21■□□□□ 0.51
PDLIM5-202ENST00000318007 DHX36Q9H2U1 1008 aaKnown RBP18.21■□□□□ 0.51
PDLIM5-202ENST00000318007 ANAPC4Q9UJX5 808 aa18.21■□□□□ 0.51
PDLIM5-202ENST00000318007 SIPA1L1O43166 1804 aa18.21■□□□□ 0.51
PDLIM5-202ENST00000318007 MPHOSPH10O00566 681 aaKnown RBP18.21■□□□□ 0.5
PDLIM5-202ENST00000318007 GDF11O95390 407 aa18.21■□□□□ 0.5
PDLIM5-202ENST00000318007 FGD1P98174 961 aa18.21■□□□□ 0.5
PDLIM5-202ENST00000318007 USP48Q86UV5 1035 aa18.21■□□□□ 0.5
PDLIM5-202ENST00000318007 FAM83AQ86UY5 434 aa18.21■□□□□ 0.5
PDLIM5-202ENST00000318007 CYP46A1Q9Y6A2 500 aa18.21■□□□□ 0.5
PDLIM5-202ENST00000318007 TSPY2A6NKD2 308 aa18.2■□□□□ 0.5
PDLIM5-202ENST00000318007 PSMA5P28066 241 aa18.2■□□□□ 0.5
PDLIM5-202ENST00000318007 C16orf86Q6ZW13 317 aa18.2■□□□□ 0.5
PDLIM5-202ENST00000318007 RUFY3Q7L099 469 aa18.2■□□□□ 0.5
PDLIM5-202ENST00000318007 CLEC10AQ8IUN9 316 aa18.2■□□□□ 0.5
PDLIM5-202ENST00000318007 TEPSINQ96N21 525 aa18.2■□□□□ 0.5
PDLIM5-202ENST00000318007 RNF41Q9H4P4 317 aaPredicted RBP18.2■□□□□ 0.5
PDLIM5-202ENST00000318007 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.2■□□□□ 0.5
PDLIM5-202ENST00000318007 ZSWIM5Q9P217 1185 aa18.2■□□□□ 0.5
PDLIM5-202ENST00000318007 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.2■□□□□ 0.5
PDLIM5-202ENST00000318007 TSGA10IPQ3SY00 556 aa18.19■□□□□ 0.5
PDLIM5-202ENST00000318007 PNMA8AQ86V59 439 aaPredicted RBP18.19■□□□□ 0.5
PDLIM5-202ENST00000318007 ZNF408Q9H9D4 720 aa18.19■□□□□ 0.5
PDLIM5-202ENST00000318007 NAP1L2Q9ULW6 460 aaPredicted RBP18.19■□□□□ 0.5
PDLIM5-202ENST00000318007 ATRNL1Q5VV63 1379 aa18.19■□□□□ 0.5
PDLIM5-202ENST00000318007 PRC1O43663 620 aa18.19■□□□□ 0.5
PDLIM5-202ENST00000318007 RPS6KB1P23443 525 aa18.19■□□□□ 0.5
PDLIM5-202ENST00000318007 ANTXR2P58335 489 aa18.19■□□□□ 0.5
PDLIM5-202ENST00000318007 RABEP1Q15276 862 aa18.19■□□□□ 0.5
PDLIM5-202ENST00000318007 FKBP1CQ5VVH2 108 aa18.19■□□□□ 0.5
PDLIM5-202ENST00000318007 RAB11FIP4Q86YS3 637 aa18.19■□□□□ 0.5
PDLIM5-202ENST00000318007 MB21D2Q8IYB1 491 aaPredicted RBP18.19■□□□□ 0.5
PDLIM5-202ENST00000318007 ZNF444Q8N0Y2 327 aaPredicted RBP18.19■□□□□ 0.5
PDLIM5-202ENST00000318007 ZSWIM6Q9HCJ5 1215 aa18.19■□□□□ 0.5
PDLIM5-202ENST00000318007 PDRG1Q9NUG6 133 aa18.19■□□□□ 0.5
PDLIM5-202ENST00000318007 ROBO3Q96MS0 1386 aa18.18■□□□□ 0.5
PDLIM5-202ENST00000318007 TRAF5O00463 557 aa18.18■□□□□ 0.5
PDLIM5-202ENST00000318007 TSPY3P0CV98 308 aa18.18■□□□□ 0.5
PDLIM5-202ENST00000318007 TSPY8P0CW00 308 aa18.18■□□□□ 0.5
PDLIM5-202ENST00000318007 RASA1P20936 1047 aa18.18■□□□□ 0.5
PDLIM5-202ENST00000318007 SHMT1P34896 483 aa18.18■□□□□ 0.5
PDLIM5-202ENST00000318007 TFAP4Q01664 338 aa18.18■□□□□ 0.5
PDLIM5-202ENST00000318007 GABPAQ06546 454 aa18.18■□□□□ 0.5
PDLIM5-202ENST00000318007 Q6ZUG5 572 aa18.18■□□□□ 0.5
PDLIM5-202ENST00000318007 ESR2Q92731 530 aa18.18■□□□□ 0.5
PDLIM5-202ENST00000318007 KRT23Q9C075 422 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms