RNA–Protein interactions for RNA: ENST00000288976.3

PTPDC1-201, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPDC1, Length 4,398 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-201ENST00000288976 RUFY3Q7L099 469 aa9.95□□□□□ -0.82
PTPDC1-201ENST00000288976 TTC6Q86TZ1 520 aa9.95□□□□□ -0.82
PTPDC1-201ENST00000288976 APOBEC3FQ8IUX4 373 aaKnown RBP9.95□□□□□ -0.82
PTPDC1-201ENST00000288976 TGFBRAP1Q8WUH2 860 aa9.95□□□□□ -0.82
PTPDC1-201ENST00000288976 SDR42E1Q8WUS8 393 aa9.95□□□□□ -0.82
PTPDC1-201ENST00000288976 FOXD4L1Q9NU39 408 aa9.95□□□□□ -0.82
PTPDC1-201ENST00000288976 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.95□□□□□ -0.82
PTPDC1-201ENST00000288976 GLTPD2A6NH11 291 aa9.95□□□□□ -0.82
PTPDC1-201ENST00000288976 TNNI2P48788 182 aa9.95□□□□□ -0.82
PTPDC1-201ENST00000288976 KIF4BQ2VIQ3 1234 aa9.95□□□□□ -0.82
PTPDC1-201ENST00000288976 NCOA7Q8NI08 942 aa9.95□□□□□ -0.82
PTPDC1-201ENST00000288976 CNOT7Q9UIV1 285 aaKnown RBP9.95□□□□□ -0.82
PTPDC1-201ENST00000288976 RBM19Q9Y4C8 960 aaKnown RBP9.95□□□□□ -0.82
PTPDC1-201ENST00000288976 CCDC178Q5BJE1 867 aa9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 AKNAD1Q5T1N1 836 aa9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 C16orf86Q6ZW13 317 aa9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 USP50Q70EL3 339 aaPredicted RBP9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 ATRXP46100 2492 aa9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 CNTNAP1P78357 1384 aa9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 ST18O60284 1047 aa9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 RPS6KB1P23443 525 aa9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 ANKRD1Q15327 319 aa9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 MB21D2Q8IYB1 491 aaPredicted RBP9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 RASEFQ8IZ41 740 aa9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 FAM151AQ8WW52 585 aa9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 NEK1Q96PY6 1258 aa9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 ZBTB12Q9Y330 459 aaPredicted RBP9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 CYP46A1Q9Y6A2 500 aa9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 GJA3Q9Y6H8 435 aa9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 PES1O00541 588 aaKnown RBP9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 ECM2O94769 699 aaPredicted RBP9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 HLA-DOAP06340 250 aa9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 PDE4BQ07343 736 aa9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 TBC1D10CQ8IV04 446 aa9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 FAM198AQ9UFP1 575 aa9.94□□□□□ -0.82
PTPDC1-201ENST00000288976 IQCA1LA6NCM1 817 aa9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 WNT10BO00744 389 aa9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 HOOK2Q96ED9 719 aa9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 PRMT6Q96LA8 375 aaPredicted RBP9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 TTC14Q96N46 770 aa9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 MCM9Q9NXL9 1143 aa9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 NID2Q14112 1375 aa9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 TBC1D12O60347 775 aa9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 PPP4R3BQ5MIZ7 849 aa9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 MFSD6Q6ZSS7 791 aa9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 AGXT2Q9BYV1 514 aa9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 TCP11L1Q9NUJ3 509 aa9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 HACL1Q9UJ83 578 aa9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 KDM4AO75164 1064 aa9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 TRDNQ13061 729 aa9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 ZC3H15Q8WU90 426 aaKnown RBP9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 ATAD5Q96QE3 1844 aa9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 CHMP4BP1P59074 171 aa9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 EXOSC10Q01780 885 aaKnown RBP9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 GABPAQ06546 454 aa9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 STOX1Q6ZVD7 989 aa9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 MAPKAPK5Q8IW41 473 aa9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 JAKMIP1Q96N16 626 aaKnown RBP9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 DDX4Q9NQI0 724 aaKnown RBP9.93□□□□□ -0.82
PTPDC1-201ENST00000288976 DOCK1Q14185 1865 aa9.92□□□□□ -0.82
PTPDC1-201ENST00000288976 AKAP17AQ02040 695 aaKnown RBP9.92□□□□□ -0.82
PTPDC1-201ENST00000288976 MAP3K10Q02779 954 aa9.92□□□□□ -0.82
PTPDC1-201ENST00000288976 BLOC1S2Q6QNY1 142 aa9.92□□□□□ -0.82
PTPDC1-201ENST00000288976 DHX32Q7L7V1 743 aaKnown RBP9.92□□□□□ -0.82
PTPDC1-201ENST00000288976 STK11IPQ8N1F8 1099 aa9.92□□□□□ -0.82
PTPDC1-201ENST00000288976 GINM1Q9NU53 330 aa9.92□□□□□ -0.82
PTPDC1-201ENST00000288976 PGAP2Q9UHJ9 254 aa9.92□□□□□ -0.82
PTPDC1-201ENST00000288976 NEDD4P46934 1319 aa9.92□□□□□ -0.82
PTPDC1-201ENST00000288976 USP17L12C9JPN9 530 aa9.92□□□□□ -0.82
PTPDC1-201ENST00000288976 USP17L21D6R901 530 aa9.92□□□□□ -0.82
PTPDC1-201ENST00000288976 CASTP20810 708 aaKnown RBP9.92□□□□□ -0.82
PTPDC1-201ENST00000288976 RCAN1P53805 252 aa9.92□□□□□ -0.82
PTPDC1-201ENST00000288976 FOXP4Q8IVH2 680 aaPredicted RBP9.92□□□□□ -0.82
PTPDC1-201ENST00000288976 TMEM87BQ96K49 555 aa9.92□□□□□ -0.82
PTPDC1-201ENST00000288976 HERC5Q9UII4 1024 aaKnown RBP9.92□□□□□ -0.82
PTPDC1-201ENST00000288976 POLR3DP05423 398 aaPredicted RBP9.92□□□□□ -0.82
PTPDC1-201ENST00000288976 MCM5P33992 734 aa9.92□□□□□ -0.82
PTPDC1-201ENST00000288976 RALYLQ86SE5 291 aaKnown RBP9.92□□□□□ -0.82
PTPDC1-201ENST00000288976 ESR2Q92731 530 aa9.92□□□□□ -0.82
PTPDC1-201ENST00000288976 PI4KBQ9UBF8 816 aa9.91□□□□□ -0.82
PTPDC1-201ENST00000288976 ADCK5Q3MIX3 580 aa9.91□□□□□ -0.82
PTPDC1-201ENST00000288976 TDRD3Q9H7E2 651 aaKnown RBP9.91□□□□□ -0.82
PTPDC1-201ENST00000288976 PDRG1Q9NUG6 133 aa9.91□□□□□ -0.82
PTPDC1-201ENST00000288976 EVCP57679 992 aa9.91□□□□□ -0.82
PTPDC1-201ENST00000288976 PNMA8AQ86V59 439 aaPredicted RBP9.91□□□□□ -0.82
PTPDC1-201ENST00000288976 HSCBQ8IWL3 235 aa9.91□□□□□ -0.82
PTPDC1-201ENST00000288976 SLKQ9H2G2 1235 aaPredicted RBP9.91□□□□□ -0.82
PTPDC1-201ENST00000288976 CTDSPL2Q05D32 466 aa9.91□□□□□ -0.82
PTPDC1-201ENST00000288976 ZSCAN29Q8IWY8 852 aaPredicted RBP9.91□□□□□ -0.82
PTPDC1-201ENST00000288976 ZSCAN31Q96LW9 406 aaPredicted RBP9.91□□□□□ -0.82
PTPDC1-201ENST00000288976 SYNPO2Q9UMS6 1093 aa9.91□□□□□ -0.82
PTPDC1-201ENST00000288976 PICALMQ13492 652 aa9.9□□□□□ -0.82
PTPDC1-201ENST00000288976 PCDHAC2Q9Y5I4 1007 aa9.9□□□□□ -0.82
PTPDC1-201ENST00000288976 NFIAQ12857 509 aa9.9□□□□□ -0.82
PTPDC1-201ENST00000288976 TATDN1Q6P1N9 297 aa9.9□□□□□ -0.82
PTPDC1-201ENST00000288976 ANKS1AQ92625 1134 aa9.9□□□□□ -0.82
PTPDC1-201ENST00000288976 DDNO94850 711 aaPredicted RBP9.9□□□□□ -0.83
PTPDC1-201ENST00000288976 NOVP48745 357 aa9.9□□□□□ -0.83
PTPDC1-201ENST00000288976 SART3Q15020 963 aaKnown RBP9.9□□□□□ -0.83
PTPDC1-201ENST00000288976 WDR78Q5VTH9 848 aa9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms