RNA–Protein interactions for RNA: ENST00000260054.8

CCDC90B-201, Transcript of coiled-coil domain containing 90B, humanhuman

TSL 2

Gene CCDC90B, Length 1,688 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC90B-201ENST00000260054 SIPA1L1O43166 1804 aa18.78■□□□□ 0.6
CCDC90B-201ENST00000260054 ROBO3Q96MS0 1386 aa18.78■□□□□ 0.6
CCDC90B-201ENST00000260054 RBM25P49756 843 aaKnown RBP18.78■□□□□ 0.6
CCDC90B-201ENST00000260054 LDHDQ86WU2 507 aa18.78■□□□□ 0.6
CCDC90B-201ENST00000260054 TBC1D32Q96NH3 1257 aa18.78■□□□□ 0.6
CCDC90B-201ENST00000260054 INCENPQ9NQS7 918 aa18.78■□□□□ 0.6
CCDC90B-201ENST00000260054 PI4KBQ9UBF8 816 aa18.78■□□□□ 0.6
CCDC90B-201ENST00000260054 PPP2R3BQ9Y5P8 575 aa18.78■□□□□ 0.6
CCDC90B-201ENST00000260054 SNX14Q9Y5W7 946 aa18.78■□□□□ 0.6
CCDC90B-201ENST00000260054 GABPAQ06546 454 aa18.77■□□□□ 0.6
CCDC90B-201ENST00000260054 MAP1SQ66K74 1059 aaPredicted RBP18.77■□□□□ 0.6
CCDC90B-201ENST00000260054 STOX1Q6ZVD7 989 aa18.77■□□□□ 0.6
CCDC90B-201ENST00000260054 GLIS2Q9BZE0 524 aaPredicted RBP18.77■□□□□ 0.6
CCDC90B-201ENST00000260054 SERPINB13Q9UIV8 391 aa18.77■□□□□ 0.6
CCDC90B-201ENST00000260054 ZKSCAN1P17029 563 aaPredicted RBP18.76■□□□□ 0.59
CCDC90B-201ENST00000260054 YY1P25490 414 aa18.76■□□□□ 0.59
CCDC90B-201ENST00000260054 TSGA10IPQ3SY00 556 aa18.76■□□□□ 0.59
CCDC90B-201ENST00000260054 NBPF12Q5TAG4 269 aaPredicted RBP18.76■□□□□ 0.59
CCDC90B-201ENST00000260054 USP48Q86UV5 1035 aa18.76■□□□□ 0.59
CCDC90B-201ENST00000260054 SLC44A5Q8NCS7 719 aa18.76■□□□□ 0.59
CCDC90B-201ENST00000260054 STAG1Q8WVM7 1258 aa18.76■□□□□ 0.59
CCDC90B-201ENST00000260054 EHD4Q9H223 541 aa18.76■□□□□ 0.59
CCDC90B-201ENST00000260054 DNAJC18Q9H819 358 aa18.76■□□□□ 0.59
CCDC90B-201ENST00000260054 FAM196BA6NMK8 535 aa18.76■□□□□ 0.59
CCDC90B-201ENST00000260054 E7EWF7 191 aa18.76■□□□□ 0.59
CCDC90B-201ENST00000260054 ADCK5Q3MIX3 580 aa18.76■□□□□ 0.59
CCDC90B-201ENST00000260054 AKNAD1Q5T1N1 836 aa18.76■□□□□ 0.59
CCDC90B-201ENST00000260054 C16orf86Q6ZW13 317 aa18.76■□□□□ 0.59
CCDC90B-201ENST00000260054 CDC37L1Q7L3B6 337 aa18.76■□□□□ 0.59
CCDC90B-201ENST00000260054 METTL16Q86W50 562 aaKnown RBP18.76■□□□□ 0.59
CCDC90B-201ENST00000260054 NEDD4P46934 1319 aa18.75■□□□□ 0.59
CCDC90B-201ENST00000260054 KIF3CO14782 793 aa18.75■□□□□ 0.59
CCDC90B-201ENST00000260054 FOXP4Q8IVH2 680 aaPredicted RBP18.75■□□□□ 0.59
CCDC90B-201ENST00000260054 TSHZ2Q9NRE2 1034 aa18.75■□□□□ 0.59
CCDC90B-201ENST00000260054 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.75■□□□□ 0.59
CCDC90B-201ENST00000260054 PRDM1O75626 825 aa18.74■□□□□ 0.59
CCDC90B-201ENST00000260054 SLC3A2P08195 630 aaKnown RBP18.74■□□□□ 0.59
CCDC90B-201ENST00000260054 FGRP09769 529 aa18.74■□□□□ 0.59
CCDC90B-201ENST00000260054 CDK8P49336 464 aa18.74■□□□□ 0.59
CCDC90B-201ENST00000260054 ANAPC15P60006 121 aa18.74■□□□□ 0.59
CCDC90B-201ENST00000260054 COL9A3Q14050 684 aaPredicted RBP18.74■□□□□ 0.59
CCDC90B-201ENST00000260054 MFSD6Q6ZSS7 791 aa18.74■□□□□ 0.59
CCDC90B-201ENST00000260054 CRACR2BQ8N4Y2 399 aaPredicted RBP18.74■□□□□ 0.59
CCDC90B-201ENST00000260054 NKX2-3Q8TAU0 364 aa18.74■□□□□ 0.59
CCDC90B-201ENST00000260054 SSC5DA1L4H1 1573 aa18.74■□□□□ 0.59
CCDC90B-201ENST00000260054 MIGA2Q7L4E1 593 aa18.73■□□□□ 0.59
CCDC90B-201ENST00000260054 IL17RAQ96F46 866 aa18.73■□□□□ 0.59
CCDC90B-201ENST00000260054 KIF2CQ99661 725 aa18.73■□□□□ 0.59
CCDC90B-201ENST00000260054 RNF41Q9H4P4 317 aaPredicted RBP18.73■□□□□ 0.59
CCDC90B-201ENST00000260054 HERC5Q9UII4 1024 aaKnown RBP18.73■□□□□ 0.59
CCDC90B-201ENST00000260054 TBC1D12O60347 775 aa18.73■□□□□ 0.59
CCDC90B-201ENST00000260054 SHMT1P34896 483 aa18.73■□□□□ 0.59
CCDC90B-201ENST00000260054 MAP3K10Q02779 954 aa18.73■□□□□ 0.59
CCDC90B-201ENST00000260054 PDE4BQ07343 736 aa18.73■□□□□ 0.59
CCDC90B-201ENST00000260054 CDCA5Q96FF9 252 aa18.73■□□□□ 0.59
CCDC90B-201ENST00000260054 TRAF5O00463 557 aa18.72■□□□□ 0.59
CCDC90B-201ENST00000260054 PCP11498 1178 aaKnown RBP18.72■□□□□ 0.59
CCDC90B-201ENST00000260054 KRT32Q14532 448 aa18.72■□□□□ 0.59
CCDC90B-201ENST00000260054 ZNF784Q8NCA9 323 aaPredicted RBP18.72■□□□□ 0.59
CCDC90B-201ENST00000260054 JAKMIP1Q96N16 626 aaKnown RBP18.72■□□□□ 0.59
CCDC90B-201ENST00000260054 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.72■□□□□ 0.59
CCDC90B-201ENST00000260054 TOMM22Q9NS69 142 aa18.72■□□□□ 0.59
CCDC90B-201ENST00000260054 SWAP70Q9UH65 585 aa18.72■□□□□ 0.59
CCDC90B-201ENST00000260054 ORC4O43929 436 aa18.71■□□□□ 0.59
CCDC90B-201ENST00000260054 RASA1P20936 1047 aa18.71■□□□□ 0.59
CCDC90B-201ENST00000260054 FMR1Q06787 632 aaKnown RBP eCLIP18.71■□□□□ 0.59
CCDC90B-201ENST00000260054 SUPT20HL1Q3ZLR7 823 aa18.71■□□□□ 0.59
CCDC90B-201ENST00000260054 RRP12Q5JTH9 1297 aaKnown RBP18.71■□□□□ 0.59
CCDC90B-201ENST00000260054 CHADLQ6NUI6 762 aa18.71■□□□□ 0.59
CCDC90B-201ENST00000260054 NEK1Q96PY6 1258 aa18.71■□□□□ 0.59
CCDC90B-201ENST00000260054 TRIM34Q9BYJ4 488 aa18.71■□□□□ 0.59
CCDC90B-201ENST00000260054 MKNK2Q9HBH9 465 aa18.71■□□□□ 0.59
CCDC90B-201ENST00000260054 B4E1Z4 1266 aa18.7■□□□□ 0.58
CCDC90B-201ENST00000260054 TATDN1Q6P1N9 297 aa18.7■□□□□ 0.58
CCDC90B-201ENST00000260054 NCOA7Q8NI08 942 aa18.7■□□□□ 0.58
CCDC90B-201ENST00000260054 CNNM2Q9H8M5 875 aa18.7■□□□□ 0.58
CCDC90B-201ENST00000260054 ZNF287Q9HBT7 754 aa18.7■□□□□ 0.58
CCDC90B-201ENST00000260054 TAOK2Q9UL54 1235 aa18.7■□□□□ 0.58
CCDC90B-201ENST00000260054 FZD1Q9UP38 647 aa18.7■□□□□ 0.58
CCDC90B-201ENST00000260054 TRDNQ13061 729 aa18.69■□□□□ 0.58
CCDC90B-201ENST00000260054 RRP1BQ14684 758 aaKnown RBP18.69■□□□□ 0.58
CCDC90B-201ENST00000260054 RALYLQ86SE5 291 aaKnown RBP18.69■□□□□ 0.58
CCDC90B-201ENST00000260054 MB21D2Q8IYB1 491 aaPredicted RBP18.69■□□□□ 0.58
CCDC90B-201ENST00000260054 HOOK2Q96ED9 719 aa18.69■□□□□ 0.58
CCDC90B-201ENST00000260054 KRT23Q9C075 422 aa18.69■□□□□ 0.58
CCDC90B-201ENST00000260054 RANBP6O60518 1105 aaKnown RBP18.69■□□□□ 0.58
CCDC90B-201ENST00000260054 KDM4AO75164 1064 aa18.69■□□□□ 0.58
CCDC90B-201ENST00000260054 CPA1P15085 419 aa18.69■□□□□ 0.58
CCDC90B-201ENST00000260054 CASTP20810 708 aaKnown RBP18.69■□□□□ 0.58
CCDC90B-201ENST00000260054 DCAF15Q66K64 600 aa18.69■□□□□ 0.58
CCDC90B-201ENST00000260054 UPF3BQ9BZI7 483 aaKnown RBP18.69■□□□□ 0.58
CCDC90B-201ENST00000260054 PHF20L1A8MW92 1017 aa18.68■□□□□ 0.58
CCDC90B-201ENST00000260054 ITGBL1O95965 494 aaPredicted RBP18.68■□□□□ 0.58
CCDC90B-201ENST00000260054 PSMA5P28066 241 aa18.68■□□□□ 0.58
CCDC90B-201ENST00000260054 FAM47AQ5JRC9 791 aa18.68■□□□□ 0.58
CCDC90B-201ENST00000260054 CYB5R4Q7L1T6 521 aa18.68■□□□□ 0.58
CCDC90B-201ENST00000260054 ZNF444Q8N0Y2 327 aaPredicted RBP18.68■□□□□ 0.58
CCDC90B-201ENST00000260054 ESR2Q92731 530 aa18.68■□□□□ 0.58
CCDC90B-201ENST00000260054 TM6SF1Q9BZW5 370 aa18.68■□□□□ 0.58
CCDC90B-201ENST00000260054 ZSWIM6Q9HCJ5 1215 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms