RNA–Protein interactions for RNA: ENST00000641891.1

PHGDH-229, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 2,175 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-229	ENST00000641891	MUC12	Q9UKN1	5478 aa		5.69	□□□□□ -1.5
PHGDH-229	ENST00000641891	INE1	O15225	51 aa		5.66	□□□□□ -1.5
PHGDH-229	ENST00000641891	KRTAP19-3	Q7Z4W3	81 aa		5.65	□□□□□ -1.51
PHGDH-229	ENST00000641891	MT1M	Q8N339	61 aa		5.62	□□□□□ -1.51
PHGDH-229	ENST00000641891	LOC100996750	A0A140TA64	210 aa		5.6	□□□□□ -1.51
PHGDH-229	ENST00000641891	MT1G	P13640	62 aa		5.59	□□□□□ -1.52
PHGDH-229	ENST00000641891	KRTAP2-3	P0C7H8	128 aa		5.58	□□□□□ -1.52
PHGDH-229	ENST00000641891	SPRR2F	Q96RM1	72 aa		5.58	□□□□□ -1.52
PHGDH-229	ENST00000641891	KRTAP2-4	Q9BYR9	128 aa		5.58	□□□□□ -1.52
PHGDH-229	ENST00000641891	KRTAP2-1	Q9BYU5	128 aa		5.58	□□□□□ -1.52
PHGDH-229	ENST00000641891	MACF1	Q9UPN3	7388 aa	Known RBP	5.54	□□□□□ -1.52
PHGDH-229	ENST00000641891	KRTAP9-2	Q9BYQ4	174 aa		5.53	□□□□□ -1.52
PHGDH-229	ENST00000641891	LCE5A	Q5TCM9	118 aa		5.49	□□□□□ -1.53
PHGDH-229	ENST00000641891	CRCT1	Q9UGL9	99 aa		5.44	□□□□□ -1.54
PHGDH-229	ENST00000641891	DST	Q03001	7570 aa	Known RBP	5.34	□□□□□ -1.56
PHGDH-229	ENST00000641891	SYNE2	Q8WXH0	6885 aa	Known RBP	5.34	□□□□□ -1.56
PHGDH-229	ENST00000641891	KRTAP5-9	P26371	169 aa		5.26	□□□□□ -1.57
PHGDH-229	ENST00000641891	MDN1	Q9NU22	5596 aa		5.26	□□□□□ -1.57
PHGDH-229	ENST00000641891	LCE1A	Q5T7P2	110 aa		5.25	□□□□□ -1.57
PHGDH-229	ENST00000641891	SPRR2E	P22531	72 aa		5.15	□□□□□ -1.58
PHGDH-229	ENST00000641891	SPRR2B	P35325	72 aa		5.15	□□□□□ -1.58
PHGDH-229	ENST00000641891	SPRR2A	P35326	72 aa		5.15	□□□□□ -1.58
PHGDH-229	ENST00000641891	LCE3B	Q5TA77	95 aa		5.08	□□□□□ -1.6
PHGDH-229	ENST00000641891	KRTAP6-1	Q3LI64	71 aa		5.06	□□□□□ -1.6
PHGDH-229	ENST00000641891	KRTAP9-6	A0A140TA67	174 aa		5	□□□□□ -1.61
PHGDH-229	ENST00000641891	MT1A	P04731	61 aa		5	□□□□□ -1.61
PHGDH-229	ENST00000641891	KRTAP5-5	Q701N2	237 aa	Predicted RBP	5	□□□□□ -1.61
PHGDH-229	ENST00000641891	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.98	□□□□□ -1.61
PHGDH-229	ENST00000641891	KRTAP4-9	Q9BYQ8	210 aa		4.94	□□□□□ -1.62
PHGDH-229	ENST00000641891	SPRR2D	P22532	72 aa		4.94	□□□□□ -1.62
PHGDH-229	ENST00000641891	KRTAP6-3	Q3LI67	103 aa		4.93	□□□□□ -1.62
PHGDH-229	ENST00000641891	KRTAP12-4	P60329	112 aa		4.88	□□□□□ -1.63
PHGDH-229	ENST00000641891	SYNE1	Q8NF91	8797 aa	Known RBP	4.84	□□□□□ -1.63
PHGDH-229	ENST00000641891	KRTAP9-4	Q9BYQ2	154 aa		4.72	□□□□□ -1.65
PHGDH-229	ENST00000641891	LCE3D	Q9BYE3	92 aa		4.67	□□□□□ -1.66
PHGDH-229	ENST00000641891	LCE3E	Q5T5B0	92 aa		4.58	□□□□□ -1.68
PHGDH-229	ENST00000641891	KRTAP6-2	Q3LI66	62 aa		4.58	□□□□□ -1.68
PHGDH-229	ENST00000641891	NEB	P20929	6669 aa		4.55	□□□□□ -1.68
PHGDH-229	ENST00000641891	KRTAP9-7	A8MTY7	169 aa		4.54	□□□□□ -1.68
PHGDH-229	ENST00000641891	KRTAP5-4	Q6L8H1	288 aa		4.5	□□□□□ -1.69
PHGDH-229	ENST00000641891	MT3	P25713	68 aa		4.48	□□□□□ -1.69
PHGDH-229	ENST00000641891	KRTAP4-6	Q9BYQ5	205 aa		4.38	□□□□□ -1.71
PHGDH-229	ENST00000641891	MT4	P47944	62 aa		4.36	□□□□□ -1.71
PHGDH-229	ENST00000641891	OBSCN	Q5VST9	7968 aa		4.31	□□□□□ -1.72
PHGDH-229	ENST00000641891	PRM1	P04553	51 aa		4.3	□□□□□ -1.72
PHGDH-229	ENST00000641891	LCE4A	Q5TA78	99 aa		4.26	□□□□□ -1.73
PHGDH-229	ENST00000641891	KRTAP20-2	Q3LI61	65 aa		4.24	□□□□□ -1.73
PHGDH-229	ENST00000641891	KRTAP2-2	Q9BYT5	123 aa		4.24	□□□□□ -1.73
PHGDH-229	ENST00000641891	KRTAP5-2	Q701N4	177 aa		4.17	□□□□□ -1.74
PHGDH-229	ENST00000641891	LCE1D	Q5T752	114 aa		4.15	□□□□□ -1.75
PHGDH-229	ENST00000641891	HMCN1	Q96RW7	5635 aa		4.13	□□□□□ -1.75
PHGDH-229	ENST00000641891	KRTAP20-1	Q3LI63	56 aa		4.06	□□□□□ -1.76
PHGDH-229	ENST00000641891	KRTAP5-3	Q6L8H2	238 aa		4.06	□□□□□ -1.76
PHGDH-229	ENST00000641891	MUC5AC	P98088	5654 aa		3.75	□□□□□ -1.81
PHGDH-229	ENST00000641891	LCE1E	Q5T753	118 aa		3.72	□□□□□ -1.81
PHGDH-229	ENST00000641891	LCE1B	Q5T7P3	118 aa		3.69	□□□□□ -1.82
PHGDH-229	ENST00000641891	KRTAP5-1	Q6L8H4	278 aa		3.59	□□□□□ -1.84
PHGDH-229	ENST00000641891	KRTAP4-2	Q9BYR5	136 aa		3.57	□□□□□ -1.84
PHGDH-229	ENST00000641891	KRTAP5-10	Q6L8G5	202 aa		3.56	□□□□□ -1.84
PHGDH-229	ENST00000641891	KRTAP4-11	Q9BYQ6	195 aa		3.56	□□□□□ -1.84
PHGDH-229	ENST00000641891	LCE1C	Q5T751	118 aa		3.52	□□□□□ -1.85
PHGDH-229	ENST00000641891	LCE1F	Q5T754	118 aa		3.49	□□□□□ -1.85
PHGDH-229	ENST00000641891	KRTAP5-8	O75690	187 aa		3.42	□□□□□ -1.86
PHGDH-229	ENST00000641891	AHNAK2	Q8IVF2	5795 aa		3.38	□□□□□ -1.87
PHGDH-229	ENST00000641891	GPR98	Q8WXG9	6306 aa		3.36	□□□□□ -1.87
PHGDH-229	ENST00000641891	KRTAP5-7	Q6L8G8	165 aa		3.32	□□□□□ -1.88
PHGDH-229	ENST00000641891	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.3	□□□□□ -1.88
PHGDH-229	ENST00000641891	KRTAP21-2	Q3LI59	83 aa		3.27	□□□□□ -1.89
PHGDH-229	ENST00000641891	KRTAP5-11	Q6L8G4	156 aa		3.05	□□□□□ -1.92
PHGDH-229	ENST00000641891	KRTAP4-4	Q9BYR3	166 aa		3.01	□□□□□ -1.93
PHGDH-229	ENST00000641891	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.99	□□□□□ -1.93
PHGDH-229	ENST00000641891	KRTAP4-12	Q9BQ66	201 aa		2.95	□□□□□ -1.94
PHGDH-229	ENST00000641891	KRTAP9-9	Q9BYP9	154 aa		2.93	□□□□□ -1.94
PHGDH-229	ENST00000641891	KRTAP21-1	Q3LI58	79 aa		2.65	□□□□□ -1.99
PHGDH-229	ENST00000641891	PHGR1	C9JFL3	82 aa		2.64	□□□□□ -1.99
PHGDH-229	ENST00000641891	AHNAK	Q09666	5890 aa	Known RBP	2.63	□□□□□ -1.99
PHGDH-229	ENST00000641891	MUC19	Q7Z5P9	8384 aa		2.62	□□□□□ -1.99
PHGDH-229	ENST00000641891	MUC16	Q8WXI7	14507 aa		1.75	□□□□□ -2.13

Retrieved 78 of 20,778 RNA–protein pairs in 11.6 ms