RNA–Protein interactions for RNA: ENST00000636610.1

CACNA1A-228, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

TSL 5

Gene CACNA1A, Length 3,011 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-228ENST00000636610 MT1EP04732 61 aa4.8□□□□□ -1.64
CACNA1A-228ENST00000636610 CRCT1Q9UGL9 99 aa4.79□□□□□ -1.64
CACNA1A-228ENST00000636610 LOC100996750A0A140TA64 210 aa4.78□□□□□ -1.64
CACNA1A-228ENST00000636610 KRTAP2-3P0C7H8 128 aa4.68□□□□□ -1.66
CACNA1A-228ENST00000636610 MT1GP13640 62 aa4.68□□□□□ -1.66
CACNA1A-228ENST00000636610 KRTAP2-4Q9BYR9 128 aa4.68□□□□□ -1.66
CACNA1A-228ENST00000636610 KRTAP2-1Q9BYU5 128 aa4.68□□□□□ -1.66
CACNA1A-228ENST00000636610 SYNE1Q8NF91 8797 aaKnown RBP4.62□□□□□ -1.67
CACNA1A-228ENST00000636610 OBSCNQ5VST9 7968 aa4.61□□□□□ -1.67
CACNA1A-228ENST00000636610 KRTAP9-6A0A140TA67 174 aa4.58□□□□□ -1.68
CACNA1A-228ENST00000636610 KRTAP19-6Q3LI70 58 aa4.58□□□□□ -1.68
CACNA1A-228ENST00000636610 SYNE2Q8WXH0 6885 aaKnown RBP4.55□□□□□ -1.68
CACNA1A-228ENST00000636610 MACF1Q9UPN3 7388 aaKnown RBP4.53□□□□□ -1.68
CACNA1A-228ENST00000636610 MT1MQ8N339 61 aa4.5□□□□□ -1.69
CACNA1A-228ENST00000636610 KRTAP19-3Q7Z4W3 81 aa4.47□□□□□ -1.69
CACNA1A-228ENST00000636610 SPRR2FQ96RM1 72 aa4.46□□□□□ -1.69
CACNA1A-228ENST00000636610 MDN1Q9NU22 5596 aa4.41□□□□□ -1.7
CACNA1A-228ENST00000636610 KRTAP19-4Q3LI73 84 aa4.38□□□□□ -1.71
CACNA1A-228ENST00000636610 LCE3BQ5TA77 95 aa4.38□□□□□ -1.71
CACNA1A-228ENST00000636610 KRTAP4-9Q9BYQ8 210 aa4.38□□□□□ -1.71
CACNA1A-228ENST00000636610 KRTAP12-4P60329 112 aa4.36□□□□□ -1.71
CACNA1A-228ENST00000636610 KRTAP9-2Q9BYQ4 174 aa4.35□□□□□ -1.71
CACNA1A-228ENST00000636610 LCE5AQ5TCM9 118 aa4.27□□□□□ -1.73
CACNA1A-228ENST00000636610 KRTAP6-1Q3LI64 71 aa4.17□□□□□ -1.74
CACNA1A-228ENST00000636610 LCE1AQ5T7P2 110 aa4.01□□□□□ -1.77
CACNA1A-228ENST00000636610 LCE3DQ9BYE3 92 aa4□□□□□ -1.77
CACNA1A-228ENST00000636610 SPRR2EP22531 72 aa3.99□□□□□ -1.77
CACNA1A-228ENST00000636610 SPRR2BP35325 72 aa3.99□□□□□ -1.77
CACNA1A-228ENST00000636610 SPRR2AP35326 72 aa3.99□□□□□ -1.77
CACNA1A-228ENST00000636610 KRTAP9-7A8MTY7 169 aa3.97□□□□□ -1.77
CACNA1A-228ENST00000636610 MT1AP04731 61 aa3.96□□□□□ -1.78
CACNA1A-228ENST00000636610 LCE3EQ5T5B0 92 aa3.91□□□□□ -1.78
CACNA1A-228ENST00000636610 KRTAP2-2Q9BYT5 123 aa3.89□□□□□ -1.79
CACNA1A-228ENST00000636610 PRM1P04553 51 aa3.87□□□□□ -1.79
CACNA1A-228ENST00000636610 KRTAP5-5Q701N2 237 aaPredicted RBP3.84□□□□□ -1.79
CACNA1A-228ENST00000636610 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.82□□□□□ -1.8
CACNA1A-228ENST00000636610 KRTAP5-9P26371 169 aa3.81□□□□□ -1.8
CACNA1A-228ENST00000636610 SPRR2DP22532 72 aa3.78□□□□□ -1.8
CACNA1A-228ENST00000636610 KRTAP6-2Q3LI66 62 aa3.76□□□□□ -1.81
CACNA1A-228ENST00000636610 KRTAP9-4Q9BYQ2 154 aa3.74□□□□□ -1.81
CACNA1A-228ENST00000636610 LCE1EQ5T753 118 aa3.68□□□□□ -1.82
CACNA1A-228ENST00000636610 KRTAP6-3Q3LI67 103 aa3.65□□□□□ -1.83
CACNA1A-228ENST00000636610 MT3P25713 68 aa3.59□□□□□ -1.83
CACNA1A-228ENST00000636610 KRTAP20-1Q3LI63 56 aa3.54□□□□□ -1.84
CACNA1A-228ENST00000636610 LCE1FQ5T754 118 aa3.52□□□□□ -1.85
CACNA1A-228ENST00000636610 MT4P47944 62 aa3.51□□□□□ -1.85
CACNA1A-228ENST00000636610 LCE1DQ5T752 114 aa3.5□□□□□ -1.85
CACNA1A-228ENST00000636610 KRTAP4-6Q9BYQ5 205 aa3.48□□□□□ -1.85
CACNA1A-228ENST00000636610 NEBP20929 6669 aa3.44□□□□□ -1.86
CACNA1A-228ENST00000636610 HMCN1Q96RW7 5635 aa3.31□□□□□ -1.88
CACNA1A-228ENST00000636610 KRTAP5-4Q6L8H1 288 aa3.29□□□□□ -1.88
CACNA1A-228ENST00000636610 KRTAP20-2Q3LI61 65 aa3.23□□□□□ -1.89
CACNA1A-228ENST00000636610 MUC5ACP98088 5654 aa3.18□□□□□ -1.9
CACNA1A-228ENST00000636610 KRTAP9-9Q9BYP9 154 aa3.16□□□□□ -1.9
CACNA1A-228ENST00000636610 LCE4AQ5TA78 99 aa3.14□□□□□ -1.91
CACNA1A-228ENST00000636610 LCE1BQ5T7P3 118 aa3.14□□□□□ -1.91
CACNA1A-228ENST00000636610 KRTAP5-2Q701N4 177 aa3.08□□□□□ -1.92
CACNA1A-228ENST00000636610 GPR98Q8WXG9 6306 aa3.07□□□□□ -1.92
CACNA1A-228ENST00000636610 KRTAP5-7Q6L8G8 165 aa3.04□□□□□ -1.92
CACNA1A-228ENST00000636610 KRTAP5-3Q6L8H2 238 aa3□□□□□ -1.93
CACNA1A-228ENST00000636610 KRTAP4-11Q9BYQ6 195 aa3□□□□□ -1.93
CACNA1A-228ENST00000636610 MUC19Q7Z5P9 8384 aa3□□□□□ -1.93
CACNA1A-228ENST00000636610 MUC5BQ9HC84 5762 aaPredicted RBP2.95□□□□□ -1.94
CACNA1A-228ENST00000636610 KRTAP4-12Q9BQ66 201 aa2.86□□□□□ -1.95
CACNA1A-228ENST00000636610 KRTAP5-10Q6L8G5 202 aa2.85□□□□□ -1.95
CACNA1A-228ENST00000636610 AHNAKQ09666 5890 aaKnown RBP2.83□□□□□ -1.96
CACNA1A-228ENST00000636610 KRTAP4-2Q9BYR5 136 aa2.77□□□□□ -1.97
CACNA1A-228ENST00000636610 KRTAP5-1Q6L8H4 278 aa2.71□□□□□ -1.98
CACNA1A-228ENST00000636610 AHNAK2Q8IVF2 5795 aa2.7□□□□□ -1.98
CACNA1A-228ENST00000636610 KRTAP4-4Q9BYR3 166 aa2.69□□□□□ -1.98
CACNA1A-228ENST00000636610 LCE1CQ5T751 118 aa2.66□□□□□ -1.98
CACNA1A-228ENST00000636610 KRTAP21-2Q3LI59 83 aa2.61□□□□□ -1.99
CACNA1A-228ENST00000636610 KRTAP5-8O75690 187 aa2.51□□□□□ -2.01
CACNA1A-228ENST00000636610 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.42□□□□□ -2.02
CACNA1A-228ENST00000636610 KRTAP21-1Q3LI58 79 aa2.26□□□□□ -2.05
CACNA1A-228ENST00000636610 KRTAP5-11Q6L8G4 156 aa2.26□□□□□ -2.05
CACNA1A-228ENST00000636610 PHGR1C9JFL3 82 aa2□□□□□ -2.09
CACNA1A-228ENST00000636610 MUC16Q8WXI7 14507 aa1.36□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 72.3 ms