RNA–Protein interactions for RNA: ENST00000621016.4

CDH1-214, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 3,304 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-214ENST00000621016 KRTAP4-3Q9BYR4 195 aa3.65□□□□□ -1.83
CDH1-214ENST00000621016 KRTAP12-4P60329 112 aa3.64□□□□□ -1.83
CDH1-214ENST00000621016 LOC100996750A0A140TA64 210 aa3.63□□□□□ -1.83
CDH1-214ENST00000621016 MT1LQ93083 61 aa3.62□□□□□ -1.83
CDH1-214ENST00000621016 MT1EP04732 61 aa3.61□□□□□ -1.83
CDH1-214ENST00000621016 KRTAP2-3P0C7H8 128 aa3.58□□□□□ -1.84
CDH1-214ENST00000621016 KRTAP2-4Q9BYR9 128 aa3.58□□□□□ -1.84
CDH1-214ENST00000621016 KRTAP2-1Q9BYU5 128 aa3.58□□□□□ -1.84
CDH1-214ENST00000621016 MT1GP13640 62 aa3.56□□□□□ -1.84
CDH1-214ENST00000621016 SYNE2Q8WXH0 6885 aaKnown RBP3.49□□□□□ -1.85
CDH1-214ENST00000621016 MACF1Q9UPN3 7388 aaKnown RBP3.46□□□□□ -1.86
CDH1-214ENST00000621016 KRTAP19-6Q3LI70 58 aa3.45□□□□□ -1.86
CDH1-214ENST00000621016 KRTAP9-6A0A140TA67 174 aa3.44□□□□□ -1.86
CDH1-214ENST00000621016 SPRR2FQ96RM1 72 aa3.44□□□□□ -1.86
CDH1-214ENST00000621016 LCE1AQ5T7P2 110 aa3.43□□□□□ -1.86
CDH1-214ENST00000621016 MDN1Q9NU22 5596 aa3.39□□□□□ -1.87
CDH1-214ENST00000621016 MT1MQ8N339 61 aa3.39□□□□□ -1.87
CDH1-214ENST00000621016 LCE1EQ5T753 118 aa3.38□□□□□ -1.87
CDH1-214ENST00000621016 KRTAP19-3Q7Z4W3 81 aa3.38□□□□□ -1.87
CDH1-214ENST00000621016 KRTAP4-9Q9BYQ8 210 aa3.37□□□□□ -1.87
CDH1-214ENST00000621016 LCE3BQ5TA77 95 aa3.34□□□□□ -1.87
CDH1-214ENST00000621016 KRTAP6-3Q3LI67 103 aa3.34□□□□□ -1.87
CDH1-214ENST00000621016 KRTAP9-7A8MTY7 169 aa3.34□□□□□ -1.88
CDH1-214ENST00000621016 KRTAP9-2Q9BYQ4 174 aa3.33□□□□□ -1.88
CDH1-214ENST00000621016 PRM1P04553 51 aa3.32□□□□□ -1.88
CDH1-214ENST00000621016 KRTAP19-4Q3LI73 84 aa3.26□□□□□ -1.89
CDH1-214ENST00000621016 KRTAP2-2Q9BYT5 123 aa3.26□□□□□ -1.89
CDH1-214ENST00000621016 LCE5AQ5TCM9 118 aa3.21□□□□□ -1.9
CDH1-214ENST00000621016 MUC19Q7Z5P9 8384 aa3.2□□□□□ -1.9
CDH1-214ENST00000621016 LCE1DQ5T752 114 aa3.18□□□□□ -1.9
CDH1-214ENST00000621016 KRTAP6-1Q3LI64 71 aa3.15□□□□□ -1.91
CDH1-214ENST00000621016 SPRR2EP22531 72 aa3.08□□□□□ -1.92
CDH1-214ENST00000621016 SPRR2BP35325 72 aa3.08□□□□□ -1.92
CDH1-214ENST00000621016 SPRR2AP35326 72 aa3.08□□□□□ -1.92
CDH1-214ENST00000621016 KRTAP5-5Q701N2 237 aaPredicted RBP3.04□□□□□ -1.92
CDH1-214ENST00000621016 LCE3DQ9BYE3 92 aa3.03□□□□□ -1.92
CDH1-214ENST00000621016 LCE3EQ5T5B0 92 aa3□□□□□ -1.93
CDH1-214ENST00000621016 MT1AP04731 61 aa2.98□□□□□ -1.93
CDH1-214ENST00000621016 KRTAP6-2Q3LI66 62 aa2.94□□□□□ -1.94
CDH1-214ENST00000621016 LCE1FQ5T754 118 aa2.94□□□□□ -1.94
CDH1-214ENST00000621016 SPRR2DP22532 72 aa2.92□□□□□ -1.94
CDH1-214ENST00000621016 KRTAP5-9P26371 169 aa2.87□□□□□ -1.95
CDH1-214ENST00000621016 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.86□□□□□ -1.95
CDH1-214ENST00000621016 KRTAP9-4Q9BYQ2 154 aa2.82□□□□□ -1.96
CDH1-214ENST00000621016 LCE4AQ5TA78 99 aa2.81□□□□□ -1.96
CDH1-214ENST00000621016 KRTAP9-9Q9BYP9 154 aa2.78□□□□□ -1.96
CDH1-214ENST00000621016 MT3P25713 68 aa2.73□□□□□ -1.97
CDH1-214ENST00000621016 MT4P47944 62 aa2.73□□□□□ -1.97
CDH1-214ENST00000621016 KRTAP4-6Q9BYQ5 205 aa2.66□□□□□ -1.98
CDH1-214ENST00000621016 KRTAP20-1Q3LI63 56 aa2.63□□□□□ -1.99
CDH1-214ENST00000621016 NEBP20929 6669 aa2.6□□□□□ -1.99
CDH1-214ENST00000621016 GPR98Q8WXG9 6306 aa2.58□□□□□ -2
CDH1-214ENST00000621016 KRTAP4-11Q9BYQ6 195 aa2.55□□□□□ -2
CDH1-214ENST00000621016 HMCN1Q96RW7 5635 aa2.53□□□□□ -2
CDH1-214ENST00000621016 KRTAP5-4Q6L8H1 288 aa2.45□□□□□ -2.02
CDH1-214ENST00000621016 KRTAP20-2Q3LI61 65 aa2.45□□□□□ -2.02
CDH1-214ENST00000621016 LCE1BQ5T7P3 118 aa2.44□□□□□ -2.02
CDH1-214ENST00000621016 MUC5ACP98088 5654 aa2.4□□□□□ -2.03
CDH1-214ENST00000621016 KRTAP5-2Q701N4 177 aa2.28□□□□□ -2.04
CDH1-214ENST00000621016 KRTAP5-3Q6L8H2 238 aa2.24□□□□□ -2.05
CDH1-214ENST00000621016 KRTAP4-12Q9BQ66 201 aa2.23□□□□□ -2.05
CDH1-214ENST00000621016 LCE1CQ5T751 118 aa2.22□□□□□ -2.05
CDH1-214ENST00000621016 KRTAP5-10Q6L8G5 202 aa2.12□□□□□ -2.07
CDH1-214ENST00000621016 AHNAK2Q8IVF2 5795 aa2.11□□□□□ -2.07
CDH1-214ENST00000621016 KRTAP4-4Q9BYR3 166 aa2.07□□□□□ -2.08
CDH1-214ENST00000621016 KRTAP4-2Q9BYR5 136 aa2.07□□□□□ -2.08
CDH1-214ENST00000621016 MUC5BQ9HC84 5762 aaPredicted RBP2.06□□□□□ -2.08
CDH1-214ENST00000621016 KRTAP5-7Q6L8G8 165 aa2.05□□□□□ -2.08
CDH1-214ENST00000621016 KRTAP5-1Q6L8H4 278 aa2.02□□□□□ -2.09
CDH1-214ENST00000621016 AHNAKQ09666 5890 aaKnown RBP1.95□□□□□ -2.1
CDH1-214ENST00000621016 KRTAP21-2Q3LI59 83 aa1.94□□□□□ -2.1
CDH1-214ENST00000621016 KRTAP21-1Q3LI58 79 aa1.91□□□□□ -2.1
CDH1-214ENST00000621016 KRTAP5-8O75690 187 aa1.89□□□□□ -2.11
CDH1-214ENST00000621016 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.78□□□□□ -2.13
CDH1-214ENST00000621016 KRTAP5-11Q6L8G4 156 aa1.68□□□□□ -2.14
CDH1-214ENST00000621016 PHGR1C9JFL3 82 aa1.5□□□□□ -2.17
CDH1-214ENST00000621016 MUC16Q8WXI7 14507 aa1.04□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 120.8 ms