RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 KRTAP2-4Q9BYR9 128 aa4.46□□□□□ -1.7
MSH6-214ENST00000616033 KRTAP2-1Q9BYU5 128 aa4.46□□□□□ -1.7
MSH6-214ENST00000616033 KRTAP4-3Q9BYR4 195 aa4.43□□□□□ -1.7
MSH6-214ENST00000616033 MUC12Q9UKN1 5478 aa4.42□□□□□ -1.7
MSH6-214ENST00000616033 KRTAP12-4P60329 112 aa4.41□□□□□ -1.7
MSH6-214ENST00000616033 MT1LQ93083 61 aa4.38□□□□□ -1.71
MSH6-214ENST00000616033 MT1GP13640 62 aa4.36□□□□□ -1.71
MSH6-214ENST00000616033 MT1EP04732 61 aa4.32□□□□□ -1.72
MSH6-214ENST00000616033 LCE2DQ5TA82 110 aaPredicted RBP4.28□□□□□ -1.72
MSH6-214ENST00000616033 SYNE2Q8WXH0 6885 aaKnown RBP4.26□□□□□ -1.73
MSH6-214ENST00000616033 KRTAP19-6Q3LI70 58 aa4.25□□□□□ -1.73
MSH6-214ENST00000616033 MACF1Q9UPN3 7388 aaKnown RBP4.24□□□□□ -1.73
MSH6-214ENST00000616033 KRTAP4-9Q9BYQ8 210 aa4.21□□□□□ -1.74
MSH6-214ENST00000616033 LCE3BQ5TA77 95 aa4.18□□□□□ -1.74
MSH6-214ENST00000616033 SPRR2FQ96RM1 72 aa4.14□□□□□ -1.75
MSH6-214ENST00000616033 MDN1Q9NU22 5596 aa4.11□□□□□ -1.75
MSH6-214ENST00000616033 KRTAP9-2Q9BYQ4 174 aa4.1□□□□□ -1.75
MSH6-214ENST00000616033 MT1MQ8N339 61 aa4.05□□□□□ -1.76
MSH6-214ENST00000616033 KRTAP9-7A8MTY7 169 aa4.02□□□□□ -1.77
MSH6-214ENST00000616033 PRM1P04553 51 aa4□□□□□ -1.77
MSH6-214ENST00000616033 KRTAP19-3Q7Z4W3 81 aa3.99□□□□□ -1.77
MSH6-214ENST00000616033 KRTAP19-4Q3LI73 84 aa3.94□□□□□ -1.78
MSH6-214ENST00000616033 LCE3DQ9BYE3 92 aa3.85□□□□□ -1.79
MSH6-214ENST00000616033 LCE1AQ5T7P2 110 aa3.84□□□□□ -1.79
MSH6-214ENST00000616033 KRTAP6-1Q3LI64 71 aa3.83□□□□□ -1.8
MSH6-214ENST00000616033 LCE5AQ5TCM9 118 aa3.81□□□□□ -1.8
MSH6-214ENST00000616033 SPRR2EP22531 72 aa3.8□□□□□ -1.8
MSH6-214ENST00000616033 SPRR2BP35325 72 aa3.8□□□□□ -1.8
MSH6-214ENST00000616033 SPRR2AP35326 72 aa3.8□□□□□ -1.8
MSH6-214ENST00000616033 LCE3EQ5T5B0 92 aa3.79□□□□□ -1.8
MSH6-214ENST00000616033 LCE1EQ5T753 118 aa3.76□□□□□ -1.81
MSH6-214ENST00000616033 KRTAP6-3Q3LI67 103 aa3.75□□□□□ -1.81
MSH6-214ENST00000616033 MUC19Q7Z5P9 8384 aa3.71□□□□□ -1.82
MSH6-214ENST00000616033 KRTAP9-6A0A140TA67 174 aa3.69□□□□□ -1.82
MSH6-214ENST00000616033 KRTAP5-5Q701N2 237 aaPredicted RBP3.69□□□□□ -1.82
MSH6-214ENST00000616033 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.63□□□□□ -1.83
MSH6-214ENST00000616033 MT1AP04731 61 aa3.62□□□□□ -1.83
MSH6-214ENST00000616033 SPRR2DP22532 72 aa3.61□□□□□ -1.83
MSH6-214ENST00000616033 KRTAP6-2Q3LI66 62 aa3.61□□□□□ -1.83
MSH6-214ENST00000616033 KRTAP5-9P26371 169 aa3.6□□□□□ -1.83
MSH6-214ENST00000616033 LCE1DQ5T752 114 aa3.52□□□□□ -1.85
MSH6-214ENST00000616033 KRTAP2-2Q9BYT5 123 aa3.51□□□□□ -1.85
MSH6-214ENST00000616033 NEBP20929 6669 aa3.38□□□□□ -1.87
MSH6-214ENST00000616033 KRTAP9-4Q9BYQ2 154 aa3.37□□□□□ -1.87
MSH6-214ENST00000616033 MT4P47944 62 aa3.34□□□□□ -1.87
MSH6-214ENST00000616033 MT3P25713 68 aa3.28□□□□□ -1.89
MSH6-214ENST00000616033 KRTAP4-6Q9BYQ5 205 aa3.24□□□□□ -1.89
MSH6-214ENST00000616033 LCE1FQ5T754 118 aa3.16□□□□□ -1.9
MSH6-214ENST00000616033 HMCN1Q96RW7 5635 aa3.14□□□□□ -1.91
MSH6-214ENST00000616033 KRTAP4-11Q9BYQ6 195 aa3.1□□□□□ -1.91
MSH6-214ENST00000616033 KRTAP5-4Q6L8H1 288 aa3.02□□□□□ -1.93
MSH6-214ENST00000616033 KRTAP20-2Q3LI61 65 aa3□□□□□ -1.93
MSH6-214ENST00000616033 KRTAP20-1Q3LI63 56 aa2.97□□□□□ -1.93
MSH6-214ENST00000616033 LCE1BQ5T7P3 118 aa2.94□□□□□ -1.94
MSH6-214ENST00000616033 LCE4AQ5TA78 99 aa2.93□□□□□ -1.94
MSH6-214ENST00000616033 MUC5ACP98088 5654 aa2.92□□□□□ -1.94
MSH6-214ENST00000616033 KRTAP9-9Q9BYP9 154 aa2.78□□□□□ -1.96
MSH6-214ENST00000616033 KRTAP5-3Q6L8H2 238 aa2.77□□□□□ -1.97
MSH6-214ENST00000616033 KRTAP5-2Q701N4 177 aa2.77□□□□□ -1.97
MSH6-214ENST00000616033 KRTAP5-10Q6L8G5 202 aa2.65□□□□□ -1.99
MSH6-214ENST00000616033 AHNAK2Q8IVF2 5795 aa2.6□□□□□ -1.99
MSH6-214ENST00000616033 KRTAP4-4Q9BYR3 166 aa2.56□□□□□ -2
MSH6-214ENST00000616033 MUC5BQ9HC84 5762 aaPredicted RBP2.51□□□□□ -2.01
MSH6-214ENST00000616033 LCE1CQ5T751 118 aa2.49□□□□□ -2.01
MSH6-214ENST00000616033 KRTAP5-1Q6L8H4 278 aa2.47□□□□□ -2.01
MSH6-214ENST00000616033 KRTAP4-2Q9BYR5 136 aa2.46□□□□□ -2.01
MSH6-214ENST00000616033 KRTAP4-12Q9BQ66 201 aa2.45□□□□□ -2.02
MSH6-214ENST00000616033 GPR98Q8WXG9 6306 aa2.41□□□□□ -2.02
MSH6-214ENST00000616033 KRTAP5-8O75690 187 aa2.4□□□□□ -2.03
MSH6-214ENST00000616033 KRTAP21-2Q3LI59 83 aa2.33□□□□□ -2.04
MSH6-214ENST00000616033 KRTAP21-1Q3LI58 79 aa2.22□□□□□ -2.05
MSH6-214ENST00000616033 KRTAP5-7Q6L8G8 165 aa2.14□□□□□ -2.07
MSH6-214ENST00000616033 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.1□□□□□ -2.07
MSH6-214ENST00000616033 KRTAP5-11Q6L8G4 156 aa2.03□□□□□ -2.09
MSH6-214ENST00000616033 AHNAKQ09666 5890 aaKnown RBP1.94□□□□□ -2.1
MSH6-214ENST00000616033 PHGR1C9JFL3 82 aa1.79□□□□□ -2.12
MSH6-214ENST00000616033 MUC16Q8WXI7 14507 aa1.23□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 176 ms