RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 SYNE2Q8WXH0 6885 aaKnown RBP1.64□□□□□ -2.15
VPS13D-213ENST00000613099 LCE3BQ5TA77 95 aa1.63□□□□□ -2.15
VPS13D-213ENST00000613099 MT1XP80297 61 aa1.63□□□□□ -2.15
VPS13D-213ENST00000613099 KRTAP19-1Q8IUB9 90 aa1.63□□□□□ -2.15
VPS13D-213ENST00000613099 MT1AP04731 61 aa1.62□□□□□ -2.15
VPS13D-213ENST00000613099 KRTAP9-6A0A140TA67 174 aa1.61□□□□□ -2.15
VPS13D-213ENST00000613099 MT1MQ8N339 61 aa1.61□□□□□ -2.15
VPS13D-213ENST00000613099 LCE2AQ5TA79 106 aaPredicted RBP1.61□□□□□ -2.15
VPS13D-213ENST00000613099 MT1BP07438 61 aa1.6□□□□□ -2.15
VPS13D-213ENST00000613099 PRM1P04553 51 aa1.59□□□□□ -2.15
VPS13D-213ENST00000613099 SPRR2FQ96RM1 72 aa1.59□□□□□ -2.15
VPS13D-213ENST00000613099 LCE4AQ5TA78 99 aa1.56□□□□□ -2.16
VPS13D-213ENST00000613099 MUC2Q02817 5179 aa1.56□□□□□ -2.16
VPS13D-213ENST00000613099 LPAP08519 4548 aa1.56□□□□□ -2.16
VPS13D-213ENST00000613099 KRTAP4-7Q9BYR0 210 aa1.56□□□□□ -2.16
VPS13D-213ENST00000613099 SPRR2EP22531 72 aa1.55□□□□□ -2.16
VPS13D-213ENST00000613099 KRTAP19-3Q7Z4W3 81 aa1.55□□□□□ -2.16
VPS13D-213ENST00000613099 MUC12Q9UKN1 5478 aa1.55□□□□□ -2.16
VPS13D-213ENST00000613099 USH2AO75445 5202 aa1.54□□□□□ -2.16
VPS13D-213ENST00000613099 FSIP2Q5CZC0 6907 aa1.53□□□□□ -2.16
VPS13D-213ENST00000613099 SPRR2DP22532 72 aa1.52□□□□□ -2.17
VPS13D-213ENST00000613099 KRTAP9-8Q9BYQ0 159 aa1.52□□□□□ -2.17
VPS13D-213ENST00000613099 KRTAP19-2Q3LHN2 52 aa1.51□□□□□ -2.17
VPS13D-213ENST00000613099 LOC100996750A0A140TA64 210 aa1.5□□□□□ -2.17
VPS13D-213ENST00000613099 KRTAP9-3Q9BYQ3 159 aa1.5□□□□□ -2.17
VPS13D-213ENST00000613099 KRTAP6-3Q3LI67 103 aa1.49□□□□□ -2.17
VPS13D-213ENST00000613099 KRTAP4-8A0A0G2JLE6 195 aa1.49□□□□□ -2.17
VPS13D-213ENST00000613099 KRTAP4-8Q9BYQ9 185 aa1.49□□□□□ -2.17
VPS13D-213ENST00000613099 KRTAP9-7A8MTY7 169 aa1.49□□□□□ -2.17
VPS13D-213ENST00000613099 MACF1Q9UPN3 7388 aaKnown RBP1.47□□□□□ -2.17
VPS13D-213ENST00000613099 KRTAP4-9Q9BYQ8 210 aa1.46□□□□□ -2.17
VPS13D-213ENST00000613099 SSPOA2VEC9 5147 aa1.46□□□□□ -2.18
VPS13D-213ENST00000613099 MUC5BQ9HC84 5762 aaPredicted RBP1.46□□□□□ -2.18
VPS13D-213ENST00000613099 FCGBPQ9Y6R7 5405 aaPredicted RBP1.46□□□□□ -2.18
VPS13D-213ENST00000613099 KRTAP4-3Q9BYR4 195 aa1.45□□□□□ -2.18
VPS13D-213ENST00000613099 KRTAP20-1Q3LI63 56 aa1.44□□□□□ -2.18
VPS13D-213ENST00000613099 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.44□□□□□ -2.18
VPS13D-213ENST00000613099 DSTQ03001 7570 aaKnown RBP1.42□□□□□ -2.18
VPS13D-213ENST00000613099 KRTAP2-2Q9BYT5 123 aa1.42□□□□□ -2.18
VPS13D-213ENST00000613099 KRTAP5-9P26371 169 aa1.42□□□□□ -2.18
VPS13D-213ENST00000613099 SYNE1Q8NF91 8797 aaKnown RBP1.42□□□□□ -2.18
VPS13D-213ENST00000613099 MUC5ACP98088 5654 aa1.41□□□□□ -2.18
VPS13D-213ENST00000613099 OBSCNQ5VST9 7968 aa1.4□□□□□ -2.18
VPS13D-213ENST00000613099 KRTAP9-6A8MVA2 160 aa1.4□□□□□ -2.19
VPS13D-213ENST00000613099 LCE1EQ5T753 118 aa1.39□□□□□ -2.19
VPS13D-213ENST00000613099 KRTAP6-2Q3LI66 62 aa1.38□□□□□ -2.19
VPS13D-213ENST00000613099 LCE5AQ5TCM9 118 aa1.37□□□□□ -2.19
VPS13D-213ENST00000613099 MT4P47944 62 aa1.33□□□□□ -2.2
VPS13D-213ENST00000613099 KRTAP19-7Q3SYF9 63 aa1.32□□□□□ -2.2
VPS13D-213ENST00000613099 LCE1BQ5T7P3 118 aa1.29□□□□□ -2.2
VPS13D-213ENST00000613099 LCE1DQ5T752 114 aa1.29□□□□□ -2.2
VPS13D-213ENST00000613099 KRTAP9-4Q9BYQ2 154 aa1.28□□□□□ -2.21
VPS13D-213ENST00000613099 KRTAP6-1Q3LI64 71 aa1.22□□□□□ -2.21
VPS13D-213ENST00000613099 LCE1FQ5T754 118 aa1.21□□□□□ -2.22
VPS13D-213ENST00000613099 KRTAP9-9Q9BYP9 154 aa1.18□□□□□ -2.22
VPS13D-213ENST00000613099 KRTAP5-5Q701N2 237 aaPredicted RBP1.18□□□□□ -2.22
VPS13D-213ENST00000613099 LCE1CQ5T751 118 aa1.16□□□□□ -2.22
VPS13D-213ENST00000613099 KRTAP5-4Q6L8H1 288 aa1.16□□□□□ -2.22
VPS13D-213ENST00000613099 KRTAP4-11Q9BYQ6 195 aa1.16□□□□□ -2.22
VPS13D-213ENST00000613099 KRTAP5-3Q6L8H2 238 aa1.12□□□□□ -2.23
VPS13D-213ENST00000613099 KRTAP5-8O75690 187 aa1.09□□□□□ -2.23
VPS13D-213ENST00000613099 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.06□□□□□ -2.24
VPS13D-213ENST00000613099 MUC19Q7Z5P9 8384 aa1.05□□□□□ -2.24
VPS13D-213ENST00000613099 KRTAP20-2Q3LI61 65 aa1.03□□□□□ -2.24
VPS13D-213ENST00000613099 KRTAP4-4Q9BYR3 166 aa1.02□□□□□ -2.25
VPS13D-213ENST00000613099 KRTAP5-2Q701N4 177 aa1□□□□□ -2.25
VPS13D-213ENST00000613099 KRTAP5-7Q6L8G8 165 aa0.99□□□□□ -2.25
VPS13D-213ENST00000613099 KRTAP5-11Q6L8G4 156 aa0.98□□□□□ -2.25
VPS13D-213ENST00000613099 KRTAP4-6Q9BYQ5 205 aa0.98□□□□□ -2.25
VPS13D-213ENST00000613099 KRTAP5-1Q6L8H4 278 aa0.97□□□□□ -2.25
VPS13D-213ENST00000613099 KRTAP4-12Q9BQ66 201 aa0.94□□□□□ -2.26
VPS13D-213ENST00000613099 KRTAP4-2Q9BYR5 136 aa0.94□□□□□ -2.26
VPS13D-213ENST00000613099 KRTAP5-10Q6L8G5 202 aa0.89□□□□□ -2.27
VPS13D-213ENST00000613099 KRTAP21-1Q3LI58 79 aa0.83□□□□□ -2.28
VPS13D-213ENST00000613099 PHGR1C9JFL3 82 aa0.77□□□□□ -2.29
VPS13D-213ENST00000613099 MUC16Q8WXI7 14507 aa0.68□□□□□ -2.3
VPS13D-213ENST00000613099 KRTAP21-2Q3LI59 83 aa0.67□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 10.6 ms