RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 KRTAP4-3Q9BYR4 195 aa2.82□□□□□ -1.96
LIG4-204ENST00000611712 LOC100996750A0A140TA64 210 aa2.81□□□□□ -1.96
LIG4-204ENST00000611712 LCE3BQ5TA77 95 aa2.79□□□□□ -1.96
LIG4-204ENST00000611712 KRTAP12-4P60329 112 aa2.79□□□□□ -1.96
LIG4-204ENST00000611712 MT1MQ8N339 61 aa2.78□□□□□ -1.96
LIG4-204ENST00000611712 KRTAP2-3P0C7H8 128 aa2.78□□□□□ -1.97
LIG4-204ENST00000611712 KRTAP2-4Q9BYR9 128 aa2.78□□□□□ -1.97
LIG4-204ENST00000611712 KRTAP2-1Q9BYU5 128 aa2.78□□□□□ -1.97
LIG4-204ENST00000611712 DSTQ03001 7570 aaKnown RBP2.69□□□□□ -1.98
LIG4-204ENST00000611712 SPRR2EP22531 72 aa2.68□□□□□ -1.98
LIG4-204ENST00000611712 SPRR2BP35325 72 aa2.68□□□□□ -1.98
LIG4-204ENST00000611712 SPRR2AP35326 72 aa2.68□□□□□ -1.98
LIG4-204ENST00000611712 SYNE1Q8NF91 8797 aaKnown RBP2.68□□□□□ -1.98
LIG4-204ENST00000611712 FCGBPQ9Y6R7 5405 aaPredicted RBP2.67□□□□□ -1.98
LIG4-204ENST00000611712 SSPOA2VEC9 5147 aa2.65□□□□□ -1.99
LIG4-204ENST00000611712 LCE2DQ5TA82 110 aaPredicted RBP2.65□□□□□ -1.99
LIG4-204ENST00000611712 LCE3DQ9BYE3 92 aa2.62□□□□□ -1.99
LIG4-204ENST00000611712 MUC12Q9UKN1 5478 aa2.62□□□□□ -1.99
LIG4-204ENST00000611712 LCE3EQ5T5B0 92 aa2.58□□□□□ -2
LIG4-204ENST00000611712 LCE5AQ5TCM9 118 aa2.58□□□□□ -2
LIG4-204ENST00000611712 SPRR2DP22532 72 aa2.57□□□□□ -2
LIG4-204ENST00000611712 KRTAP4-9Q9BYQ8 210 aa2.57□□□□□ -2
LIG4-204ENST00000611712 OBSCNQ5VST9 7968 aa2.56□□□□□ -2
LIG4-204ENST00000611712 KRTAP9-2Q9BYQ4 174 aa2.54□□□□□ -2
LIG4-204ENST00000611712 SYNE2Q8WXH0 6885 aaKnown RBP2.53□□□□□ -2
LIG4-204ENST00000611712 MT1AP04731 61 aa2.52□□□□□ -2.01
LIG4-204ENST00000611712 KRTAP6-1Q3LI64 71 aa2.51□□□□□ -2.01
LIG4-204ENST00000611712 MACF1Q9UPN3 7388 aaKnown RBP2.46□□□□□ -2.02
LIG4-204ENST00000611712 LCE1AQ5T7P2 110 aa2.46□□□□□ -2.02
LIG4-204ENST00000611712 PRM1P04553 51 aa2.44□□□□□ -2.02
LIG4-204ENST00000611712 MT3P25713 68 aa2.42□□□□□ -2.02
LIG4-204ENST00000611712 KRTAP9-4Q9BYQ2 154 aa2.35□□□□□ -2.03
LIG4-204ENST00000611712 KRTAP9-7A8MTY7 169 aa2.33□□□□□ -2.04
LIG4-204ENST00000611712 KRTAP6-2Q3LI66 62 aa2.33□□□□□ -2.04
LIG4-204ENST00000611712 MT4P47944 62 aa2.31□□□□□ -2.04
LIG4-204ENST00000611712 KRTAP5-9P26371 169 aa2.3□□□□□ -2.04
LIG4-204ENST00000611712 KRTAP6-3Q3LI67 103 aa2.28□□□□□ -2.04
LIG4-204ENST00000611712 MDN1Q9NU22 5596 aa2.28□□□□□ -2.04
LIG4-204ENST00000611712 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.26□□□□□ -2.05
LIG4-204ENST00000611712 KRTAP9-6A0A140TA67 174 aa2.23□□□□□ -2.05
LIG4-204ENST00000611712 KRTAP5-5Q701N2 237 aaPredicted RBP2.17□□□□□ -2.06
LIG4-204ENST00000611712 LCE1DQ5T752 114 aa2.17□□□□□ -2.06
LIG4-204ENST00000611712 KRTAP4-6Q9BYQ5 205 aa2.15□□□□□ -2.06
LIG4-204ENST00000611712 LCE1BQ5T7P3 118 aa2.13□□□□□ -2.07
LIG4-204ENST00000611712 LCE4AQ5TA78 99 aa2.09□□□□□ -2.07
LIG4-204ENST00000611712 KRTAP2-2Q9BYT5 123 aa2.04□□□□□ -2.08
LIG4-204ENST00000611712 KRTAP20-2Q3LI61 65 aa2□□□□□ -2.09
LIG4-204ENST00000611712 KRTAP20-1Q3LI63 56 aa1.98□□□□□ -2.09
LIG4-204ENST00000611712 NEBP20929 6669 aa1.97□□□□□ -2.09
LIG4-204ENST00000611712 KRTAP5-4Q6L8H1 288 aa1.93□□□□□ -2.1
LIG4-204ENST00000611712 KRTAP4-11Q9BYQ6 195 aa1.84□□□□□ -2.11
LIG4-204ENST00000611712 KRTAP5-3Q6L8H2 238 aa1.83□□□□□ -2.12
LIG4-204ENST00000611712 HMCN1Q96RW7 5635 aa1.79□□□□□ -2.12
LIG4-204ENST00000611712 KRTAP5-2Q701N4 177 aa1.77□□□□□ -2.13
LIG4-204ENST00000611712 LCE1EQ5T753 118 aa1.77□□□□□ -2.13
LIG4-204ENST00000611712 MUC19Q7Z5P9 8384 aa1.76□□□□□ -2.13
LIG4-204ENST00000611712 MUC5ACP98088 5654 aa1.76□□□□□ -2.13
LIG4-204ENST00000611712 KRTAP4-12Q9BQ66 201 aa1.7□□□□□ -2.14
LIG4-204ENST00000611712 KRTAP5-10Q6L8G5 202 aa1.66□□□□□ -2.14
LIG4-204ENST00000611712 KRTAP4-4Q9BYR3 166 aa1.65□□□□□ -2.14
LIG4-204ENST00000611712 KRTAP9-9Q9BYP9 154 aa1.65□□□□□ -2.15
LIG4-204ENST00000611712 LCE1CQ5T751 118 aa1.64□□□□□ -2.15
LIG4-204ENST00000611712 KRTAP4-2Q9BYR5 136 aa1.6□□□□□ -2.15
LIG4-204ENST00000611712 LCE1FQ5T754 118 aa1.59□□□□□ -2.15
LIG4-204ENST00000611712 KRTAP5-1Q6L8H4 278 aa1.54□□□□□ -2.16
LIG4-204ENST00000611712 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.54□□□□□ -2.16
LIG4-204ENST00000611712 AHNAK2Q8IVF2 5795 aa1.5□□□□□ -2.17
LIG4-204ENST00000611712 GPR98Q8WXG9 6306 aa1.49□□□□□ -2.17
LIG4-204ENST00000611712 KRTAP5-8O75690 187 aa1.49□□□□□ -2.17
LIG4-204ENST00000611712 KRTAP21-2Q3LI59 83 aa1.48□□□□□ -2.17
LIG4-204ENST00000611712 MUC5BQ9HC84 5762 aaPredicted RBP1.42□□□□□ -2.18
LIG4-204ENST00000611712 KRTAP5-11Q6L8G4 156 aa1.4□□□□□ -2.19
LIG4-204ENST00000611712 KRTAP5-7Q6L8G8 165 aa1.31□□□□□ -2.2
LIG4-204ENST00000611712 KRTAP21-1Q3LI58 79 aa1.3□□□□□ -2.2
LIG4-204ENST00000611712 AHNAKQ09666 5890 aaKnown RBP1.22□□□□□ -2.21
LIG4-204ENST00000611712 PHGR1C9JFL3 82 aa1.2□□□□□ -2.22
LIG4-204ENST00000611712 MUC16Q8WXI7 14507 aa0.75□□□□□ -2.29
Retrieved 77 of 20,778 RNA–protein pairs in 12.5 ms