RNA–Protein interactions for RNA: ENST00000611625.4

CDH1-212, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 4,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-212ENST00000611625 LCE2AQ5TA79 106 aaPredicted RBP3.95□□□□□ -1.78
CDH1-212ENST00000611625 MT1MQ8N339 61 aa3.94□□□□□ -1.78
CDH1-212ENST00000611625 KRTAP19-6Q3LI70 58 aa3.93□□□□□ -1.78
CDH1-212ENST00000611625 LCE3DQ9BYE3 92 aa3.93□□□□□ -1.78
CDH1-212ENST00000611625 FSIP2Q5CZC0 6907 aa3.91□□□□□ -1.78
CDH1-212ENST00000611625 LOC100996750A0A140TA64 210 aa3.9□□□□□ -1.79
CDH1-212ENST00000611625 KRTAP4-3Q9BYR4 195 aa3.89□□□□□ -1.79
CDH1-212ENST00000611625 LCE3EQ5T5B0 92 aa3.88□□□□□ -1.79
CDH1-212ENST00000611625 KRTAP2-3P0C7H8 128 aa3.85□□□□□ -1.79
CDH1-212ENST00000611625 KRTAP2-4Q9BYR9 128 aa3.85□□□□□ -1.79
CDH1-212ENST00000611625 KRTAP2-1Q9BYU5 128 aa3.85□□□□□ -1.79
CDH1-212ENST00000611625 SPRR2DP22532 72 aa3.85□□□□□ -1.79
CDH1-212ENST00000611625 KRTAP9-6A8MVA2 160 aa3.82□□□□□ -1.8
CDH1-212ENST00000611625 PRM1P04553 51 aa3.63□□□□□ -1.83
CDH1-212ENST00000611625 MT1AP04731 61 aa3.63□□□□□ -1.83
CDH1-212ENST00000611625 LCE2DQ5TA82 110 aaPredicted RBP3.63□□□□□ -1.83
CDH1-212ENST00000611625 MT3P25713 68 aa3.62□□□□□ -1.83
CDH1-212ENST00000611625 KRTAP4-9Q9BYQ8 210 aa3.61□□□□□ -1.83
CDH1-212ENST00000611625 USH2AO75445 5202 aa3.61□□□□□ -1.83
CDH1-212ENST00000611625 OBSCNQ5VST9 7968 aa3.59□□□□□ -1.83
CDH1-212ENST00000611625 KMT2DO14686 5537 aa3.56□□□□□ -1.84
CDH1-212ENST00000611625 FCGBPQ9Y6R7 5405 aaPredicted RBP3.55□□□□□ -1.84
CDH1-212ENST00000611625 KRTAP9-2Q9BYQ4 174 aa3.54□□□□□ -1.84
CDH1-212ENST00000611625 LCE5AQ5TCM9 118 aa3.53□□□□□ -1.84
CDH1-212ENST00000611625 KRTAP6-1Q3LI64 71 aa3.49□□□□□ -1.85
CDH1-212ENST00000611625 SYNE2Q8WXH0 6885 aaKnown RBP3.48□□□□□ -1.85
CDH1-212ENST00000611625 DSTQ03001 7570 aaKnown RBP3.46□□□□□ -1.85
CDH1-212ENST00000611625 MT4P47944 62 aa3.42□□□□□ -1.86
CDH1-212ENST00000611625 LCE1AQ5T7P2 110 aa3.39□□□□□ -1.87
CDH1-212ENST00000611625 KRTAP9-4Q9BYQ2 154 aa3.33□□□□□ -1.88
CDH1-212ENST00000611625 KRTAP6-2Q3LI66 62 aa3.32□□□□□ -1.88
CDH1-212ENST00000611625 MUC12Q9UKN1 5478 aa3.31□□□□□ -1.88
CDH1-212ENST00000611625 SSPOA2VEC9 5147 aa3.3□□□□□ -1.88
CDH1-212ENST00000611625 LCE1DQ5T752 114 aa3.29□□□□□ -1.88
CDH1-212ENST00000611625 KRTAP9-7A8MTY7 169 aa3.29□□□□□ -1.88
CDH1-212ENST00000611625 LCE1BQ5T7P3 118 aa3.27□□□□□ -1.89
CDH1-212ENST00000611625 KRTAP9-6A0A140TA67 174 aa3.24□□□□□ -1.89
CDH1-212ENST00000611625 KRTAP6-3Q3LI67 103 aa3.23□□□□□ -1.89
CDH1-212ENST00000611625 MACF1Q9UPN3 7388 aaKnown RBP3.17□□□□□ -1.9
CDH1-212ENST00000611625 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.13□□□□□ -1.91
CDH1-212ENST00000611625 KRTAP5-9P26371 169 aa3.07□□□□□ -1.92
CDH1-212ENST00000611625 LCE4AQ5TA78 99 aa3.07□□□□□ -1.92
CDH1-212ENST00000611625 MUC19Q7Z5P9 8384 aa2.98□□□□□ -1.93
CDH1-212ENST00000611625 KRTAP2-2Q9BYT5 123 aa2.97□□□□□ -1.93
CDH1-212ENST00000611625 KRTAP20-1Q3LI63 56 aa2.96□□□□□ -1.94
CDH1-212ENST00000611625 MDN1Q9NU22 5596 aa2.91□□□□□ -1.94
CDH1-212ENST00000611625 KRTAP5-5Q701N2 237 aaPredicted RBP2.88□□□□□ -1.95
CDH1-212ENST00000611625 KRTAP4-6Q9BYQ5 205 aa2.83□□□□□ -1.96
CDH1-212ENST00000611625 KRTAP20-2Q3LI61 65 aa2.78□□□□□ -1.96
CDH1-212ENST00000611625 NEBP20929 6669 aa2.77□□□□□ -1.97
CDH1-212ENST00000611625 KRTAP4-11Q9BYQ6 195 aa2.7□□□□□ -1.98
CDH1-212ENST00000611625 LCE1EQ5T753 118 aa2.58□□□□□ -2
CDH1-212ENST00000611625 LCE1CQ5T751 118 aa2.57□□□□□ -2
CDH1-212ENST00000611625 LCE1FQ5T754 118 aa2.57□□□□□ -2
CDH1-212ENST00000611625 KRTAP5-4Q6L8H1 288 aa2.56□□□□□ -2
CDH1-212ENST00000611625 MUC5ACP98088 5654 aa2.45□□□□□ -2.02
CDH1-212ENST00000611625 KRTAP9-9Q9BYP9 154 aa2.44□□□□□ -2.02
CDH1-212ENST00000611625 KRTAP4-4Q9BYR3 166 aa2.4□□□□□ -2.02
CDH1-212ENST00000611625 GPR98Q8WXG9 6306 aa2.37□□□□□ -2.03
CDH1-212ENST00000611625 HMCN1Q96RW7 5635 aa2.32□□□□□ -2.04
CDH1-212ENST00000611625 KRTAP4-12Q9BQ66 201 aa2.31□□□□□ -2.04
CDH1-212ENST00000611625 KRTAP4-2Q9BYR5 136 aa2.31□□□□□ -2.04
CDH1-212ENST00000611625 KRTAP5-2Q701N4 177 aa2.29□□□□□ -2.04
CDH1-212ENST00000611625 KRTAP5-10Q6L8G5 202 aa2.25□□□□□ -2.05
CDH1-212ENST00000611625 KRTAP5-3Q6L8H2 238 aa2.23□□□□□ -2.05
CDH1-212ENST00000611625 AHNAK2Q8IVF2 5795 aa2.14□□□□□ -2.07
CDH1-212ENST00000611625 KRTAP5-8O75690 187 aa2.03□□□□□ -2.08
CDH1-212ENST00000611625 KRTAP5-1Q6L8H4 278 aa1.98□□□□□ -2.09
CDH1-212ENST00000611625 KRTAP21-2Q3LI59 83 aa1.95□□□□□ -2.1
CDH1-212ENST00000611625 MUC5BQ9HC84 5762 aaPredicted RBP1.93□□□□□ -2.1
CDH1-212ENST00000611625 KRTAP5-11Q6L8G4 156 aa1.92□□□□□ -2.1
CDH1-212ENST00000611625 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.85□□□□□ -2.11
CDH1-212ENST00000611625 AHNAKQ09666 5890 aaKnown RBP1.79□□□□□ -2.12
CDH1-212ENST00000611625 KRTAP21-1Q3LI58 79 aa1.78□□□□□ -2.12
CDH1-212ENST00000611625 KRTAP5-7Q6L8G8 165 aa1.68□□□□□ -2.14
CDH1-212ENST00000611625 PHGR1C9JFL3 82 aa1.61□□□□□ -2.15
CDH1-212ENST00000611625 MUC16Q8WXI7 14507 aa1.07□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 209.8 ms