RNA–Protein interactions for RNA: ENST00000607272.2

MSH6-212, Transcript of mutS homolog 6, humanhuman

TSL 2

Gene MSH6, Length 2,219 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-212ENST00000607272 RNF213Q63HN8 5207 aa4.86□□□□□ -1.63
MSH6-212ENST00000607272 MT3P25713 68 aa4.84□□□□□ -1.63
MSH6-212ENST00000607272 KRTAP4-7Q9BYR0 210 aa4.77□□□□□ -1.65
MSH6-212ENST00000607272 KRTAP10-7P60409 375 aaPredicted RBP4.76□□□□□ -1.65
MSH6-212ENST00000607272 KRTAP4-9Q9BYQ8 210 aa4.74□□□□□ -1.65
MSH6-212ENST00000607272 KRTAP4-11Q9BYQ6 195 aa4.64□□□□□ -1.67
MSH6-212ENST00000607272 LCE3CQ5T5A8 94 aa4.62□□□□□ -1.67
MSH6-212ENST00000607272 KRTAP2-2Q9BYT5 123 aa4.62□□□□□ -1.67
MSH6-212ENST00000607272 KRTAP19-5Q3LI72 72 aa4.6□□□□□ -1.67
MSH6-212ENST00000607272 KRTAP4-2Q9BYR5 136 aa4.58□□□□□ -1.68
MSH6-212ENST00000607272 KRTAP9-6A8MVA2 160 aa4.44□□□□□ -1.7
MSH6-212ENST00000607272 KMT2DO14686 5537 aa4.4□□□□□ -1.71
MSH6-212ENST00000607272 KRTAP2-3P0C7H8 128 aa4.4□□□□□ -1.71
MSH6-212ENST00000607272 KRTAP2-4Q9BYR9 128 aa4.4□□□□□ -1.71
MSH6-212ENST00000607272 KRTAP2-1Q9BYU5 128 aa4.4□□□□□ -1.71
MSH6-212ENST00000607272 KRTAP19-7Q3SYF9 63 aa4.36□□□□□ -1.71
MSH6-212ENST00000607272 USH2AO75445 5202 aa4.34□□□□□ -1.71
MSH6-212ENST00000607272 MT1LQ93083 61 aa4.25□□□□□ -1.73
MSH6-212ENST00000607272 LCE3EQ5T5B0 92 aa4.24□□□□□ -1.73
MSH6-212ENST00000607272 MT1EP04732 61 aa4.22□□□□□ -1.73
MSH6-212ENST00000607272 SSPOA2VEC9 5147 aa4.05□□□□□ -1.76
MSH6-212ENST00000607272 KRTAP19-6Q3LI70 58 aa3.98□□□□□ -1.77
MSH6-212ENST00000607272 MT1GP13640 62 aa3.97□□□□□ -1.77
MSH6-212ENST00000607272 KRTAP4-3Q9BYR4 195 aa3.95□□□□□ -1.78
MSH6-212ENST00000607272 MT1MQ8N339 61 aa3.93□□□□□ -1.78
MSH6-212ENST00000607272 KRTAP12-4P60329 112 aa3.92□□□□□ -1.78
MSH6-212ENST00000607272 KRTAP19-3Q7Z4W3 81 aa3.91□□□□□ -1.78
MSH6-212ENST00000607272 LCE1EQ5T753 118 aa3.9□□□□□ -1.78
MSH6-212ENST00000607272 KRTAP5-3Q6L8H2 238 aa3.85□□□□□ -1.79
MSH6-212ENST00000607272 CRCT1Q9UGL9 99 aa3.85□□□□□ -1.79
MSH6-212ENST00000607272 FCGBPQ9Y6R7 5405 aaPredicted RBP3.83□□□□□ -1.8
MSH6-212ENST00000607272 MUC12Q9UKN1 5478 aa3.82□□□□□ -1.8
MSH6-212ENST00000607272 LCE3DQ9BYE3 92 aa3.79□□□□□ -1.8
MSH6-212ENST00000607272 FSIP2Q5CZC0 6907 aa3.76□□□□□ -1.81
MSH6-212ENST00000607272 MT1AP04731 61 aa3.71□□□□□ -1.82
MSH6-212ENST00000607272 DSTQ03001 7570 aaKnown RBP3.69□□□□□ -1.82
MSH6-212ENST00000607272 SPRR2FQ96RM1 72 aa3.66□□□□□ -1.82
MSH6-212ENST00000607272 KRTAP6-3Q3LI67 103 aa3.64□□□□□ -1.83
MSH6-212ENST00000607272 GPR98Q8WXG9 6306 aa3.64□□□□□ -1.83
MSH6-212ENST00000607272 KRTAP6-1Q3LI64 71 aa3.59□□□□□ -1.83
MSH6-212ENST00000607272 SYNE1Q8NF91 8797 aaKnown RBP3.55□□□□□ -1.84
MSH6-212ENST00000607272 KRTAP5-5Q701N2 237 aaPredicted RBP3.5□□□□□ -1.85
MSH6-212ENST00000607272 PRM1P04553 51 aa3.47□□□□□ -1.85
MSH6-212ENST00000607272 MACF1Q9UPN3 7388 aaKnown RBP3.44□□□□□ -1.86
MSH6-212ENST00000607272 MDN1Q9NU22 5596 aa3.41□□□□□ -1.86
MSH6-212ENST00000607272 SYNE2Q8WXH0 6885 aaKnown RBP3.33□□□□□ -1.88
MSH6-212ENST00000607272 KRTAP5-9P26371 169 aa3.33□□□□□ -1.88
MSH6-212ENST00000607272 KRTAP6-2Q3LI66 62 aa3.32□□□□□ -1.88
MSH6-212ENST00000607272 SPRR2EP22531 72 aa3.26□□□□□ -1.89
MSH6-212ENST00000607272 SPRR2BP35325 72 aa3.26□□□□□ -1.89
MSH6-212ENST00000607272 SPRR2AP35326 72 aa3.26□□□□□ -1.89
MSH6-212ENST00000607272 KRTAP5-11Q6L8G4 156 aa3.15□□□□□ -1.9
MSH6-212ENST00000607272 SPRR2DP22532 72 aa3.12□□□□□ -1.91
MSH6-212ENST00000607272 OBSCNQ5VST9 7968 aa3.06□□□□□ -1.92
MSH6-212ENST00000607272 KRTAP20-1Q3LI63 56 aa3.01□□□□□ -1.93
MSH6-212ENST00000607272 NEBP20929 6669 aa3.01□□□□□ -1.93
MSH6-212ENST00000607272 KRTAP5-4Q6L8H1 288 aa2.94□□□□□ -1.94
MSH6-212ENST00000607272 AHNAKQ09666 5890 aaKnown RBP2.94□□□□□ -1.94
MSH6-212ENST00000607272 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.93□□□□□ -1.94
MSH6-212ENST00000607272 KRTAP5-2Q701N4 177 aa2.79□□□□□ -1.96
MSH6-212ENST00000607272 KRTAP20-2Q3LI61 65 aa2.75□□□□□ -1.97
MSH6-212ENST00000607272 MT4P47944 62 aa2.73□□□□□ -1.97
MSH6-212ENST00000607272 MUC5ACP98088 5654 aa2.71□□□□□ -1.98
MSH6-212ENST00000607272 MUC5BQ9HC84 5762 aaPredicted RBP2.67□□□□□ -1.98
MSH6-212ENST00000607272 KRTAP5-1Q6L8H4 278 aa2.62□□□□□ -1.99
MSH6-212ENST00000607272 HMCN1Q96RW7 5635 aa2.62□□□□□ -1.99
MSH6-212ENST00000607272 KRTAP5-10Q6L8G5 202 aa2.6□□□□□ -1.99
MSH6-212ENST00000607272 LCE1BQ5T7P3 118 aa2.53□□□□□ -2
MSH6-212ENST00000607272 KRTAP4-4Q9BYR3 166 aa2.46□□□□□ -2.01
MSH6-212ENST00000607272 LCE1CQ5T751 118 aa2.45□□□□□ -2.02
MSH6-212ENST00000607272 KRTAP5-7Q6L8G8 165 aa2.36□□□□□ -2.03
MSH6-212ENST00000607272 AHNAK2Q8IVF2 5795 aa2.33□□□□□ -2.04
MSH6-212ENST00000607272 KRTAP21-2Q3LI59 83 aa2.32□□□□□ -2.04
MSH6-212ENST00000607272 KRTAP21-1Q3LI58 79 aa2.23□□□□□ -2.05
MSH6-212ENST00000607272 MUC19Q7Z5P9 8384 aa2.17□□□□□ -2.06
MSH6-212ENST00000607272 KRTAP5-8O75690 187 aa2.14□□□□□ -2.07
MSH6-212ENST00000607272 PHGR1C9JFL3 82 aa1.79□□□□□ -2.12
MSH6-212ENST00000607272 MUC16Q8WXI7 14507 aa1.21□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 51.5 ms