RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 KRTAP19-3Q7Z4W3 81 aa3.42□□□□□ -1.86
LIG3-216ENST00000593099 MT1EP04732 61 aa3.4□□□□□ -1.87
LIG3-216ENST00000593099 KRTAP9-7A8MTY7 169 aa3.36□□□□□ -1.87
LIG3-216ENST00000593099 KRTAP12-4P60329 112 aa3.35□□□□□ -1.87
LIG3-216ENST00000593099 MT1LQ93083 61 aa3.35□□□□□ -1.87
LIG3-216ENST00000593099 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.32□□□□□ -1.88
LIG3-216ENST00000593099 KRTAP6-3Q3LI67 103 aa3.31□□□□□ -1.88
LIG3-216ENST00000593099 SPRR5A0A1B0GTR4 108 aa3.29□□□□□ -1.88
LIG3-216ENST00000593099 MT1MQ8N339 61 aa3.27□□□□□ -1.89
LIG3-216ENST00000593099 KRTAP19-7Q3SYF9 63 aa3.24□□□□□ -1.89
LIG3-216ENST00000593099 LCE3BQ5TA77 95 aa3.24□□□□□ -1.89
LIG3-216ENST00000593099 KRTAP4-7Q9BYR0 210 aa3.23□□□□□ -1.89
LIG3-216ENST00000593099 USH2AO75445 5202 aa3.22□□□□□ -1.89
LIG3-216ENST00000593099 LCE1AQ5T7P2 110 aa3.19□□□□□ -1.9
LIG3-216ENST00000593099 KRTAP20-1Q3LI63 56 aa3.18□□□□□ -1.9
LIG3-216ENST00000593099 SYNE2Q8WXH0 6885 aaKnown RBP3.15□□□□□ -1.9
LIG3-216ENST00000593099 SYNE1Q8NF91 8797 aaKnown RBP3.13□□□□□ -1.91
LIG3-216ENST00000593099 KRTAP4-3Q9BYR4 195 aa3.12□□□□□ -1.91
LIG3-216ENST00000593099 KRTAP2-3P0C7H8 128 aa3.11□□□□□ -1.91
LIG3-216ENST00000593099 KRTAP2-4Q9BYR9 128 aa3.11□□□□□ -1.91
LIG3-216ENST00000593099 MT4P47944 62 aa3.1□□□□□ -1.91
LIG3-216ENST00000593099 LCE5AQ5TCM9 118 aa3.05□□□□□ -1.92
LIG3-216ENST00000593099 FCGBPQ9Y6R7 5405 aaPredicted RBP3.04□□□□□ -1.92
LIG3-216ENST00000593099 LOC100996750A0A140TA64 210 aa3.03□□□□□ -1.92
LIG3-216ENST00000593099 LCE3EQ5T5B0 92 aa3.03□□□□□ -1.92
LIG3-216ENST00000593099 KRTAP2-2Q9BYT5 123 aa3.02□□□□□ -1.93
LIG3-216ENST00000593099 KRTAP2-1Q9BYU5 128 aa3.02□□□□□ -1.93
LIG3-216ENST00000593099 LCE3DQ9BYE3 92 aa3.02□□□□□ -1.93
LIG3-216ENST00000593099 SSPOA2VEC9 5147 aa3.01□□□□□ -1.93
LIG3-216ENST00000593099 KRTAP5-9P26371 169 aa2.98□□□□□ -1.93
LIG3-216ENST00000593099 PRM1P04553 51 aa2.98□□□□□ -1.93
LIG3-216ENST00000593099 MT1AP04731 61 aa2.97□□□□□ -1.93
LIG3-216ENST00000593099 MACF1Q9UPN3 7388 aaKnown RBP2.96□□□□□ -1.94
LIG3-216ENST00000593099 OBSCNQ5VST9 7968 aa2.95□□□□□ -1.94
LIG3-216ENST00000593099 LCE4AQ5TA78 99 aa2.93□□□□□ -1.94
LIG3-216ENST00000593099 KMT2DO14686 5537 aa2.88□□□□□ -1.95
LIG3-216ENST00000593099 KRTAP4-9Q9BYQ8 210 aa2.86□□□□□ -1.95
LIG3-216ENST00000593099 NEBP20929 6669 aa2.85□□□□□ -1.95
LIG3-216ENST00000593099 GPR98Q8WXG9 6306 aa2.82□□□□□ -1.96
LIG3-216ENST00000593099 KRTAP6-1Q3LI64 71 aa2.8□□□□□ -1.96
LIG3-216ENST00000593099 KRTAP9-6A8MVA2 160 aa2.79□□□□□ -1.96
LIG3-216ENST00000593099 DSTQ03001 7570 aaKnown RBP2.78□□□□□ -1.96
LIG3-216ENST00000593099 MUC12Q9UKN1 5478 aa2.76□□□□□ -1.97
LIG3-216ENST00000593099 KRTAP9-4Q9BYQ2 154 aa2.76□□□□□ -1.97
LIG3-216ENST00000593099 LCE1DQ5T752 114 aa2.75□□□□□ -1.97
LIG3-216ENST00000593099 KRTAP6-2Q3LI66 62 aa2.73□□□□□ -1.97
LIG3-216ENST00000593099 MDN1Q9NU22 5596 aa2.72□□□□□ -1.97
LIG3-216ENST00000593099 LCE1BQ5T7P3 118 aa2.71□□□□□ -1.98
LIG3-216ENST00000593099 KRTAP4-6Q9BYQ5 205 aa2.57□□□□□ -2
LIG3-216ENST00000593099 KRTAP20-2Q3LI61 65 aa2.54□□□□□ -2
LIG3-216ENST00000593099 MUC19Q7Z5P9 8384 aa2.52□□□□□ -2.01
LIG3-216ENST00000593099 LCE1EQ5T753 118 aa2.51□□□□□ -2.01
LIG3-216ENST00000593099 KRTAP5-4Q6L8H1 288 aa2.45□□□□□ -2.02
LIG3-216ENST00000593099 KRTAP9-9Q9BYP9 154 aa2.45□□□□□ -2.02
LIG3-216ENST00000593099 KRTAP5-5Q701N2 237 aaPredicted RBP2.39□□□□□ -2.03
LIG3-216ENST00000593099 LCE1CQ5T751 118 aa2.36□□□□□ -2.03
LIG3-216ENST00000593099 LCE1FQ5T754 118 aa2.36□□□□□ -2.03
LIG3-216ENST00000593099 KRTAP4-11Q9BYQ6 195 aa2.3□□□□□ -2.04
LIG3-216ENST00000593099 KRTAP5-3Q6L8H2 238 aa2.25□□□□□ -2.05
LIG3-216ENST00000593099 HMCN1Q96RW7 5635 aa2.14□□□□□ -2.07
LIG3-216ENST00000593099 AHNAK2Q8IVF2 5795 aa2.1□□□□□ -2.07
LIG3-216ENST00000593099 KRTAP5-2Q701N4 177 aa2.08□□□□□ -2.08
LIG3-216ENST00000593099 MUC5ACP98088 5654 aa2.07□□□□□ -2.08
LIG3-216ENST00000593099 KRTAP4-12Q9BQ66 201 aa2.02□□□□□ -2.09
LIG3-216ENST00000593099 KRTAP4-2Q9BYR5 136 aa2.02□□□□□ -2.09
LIG3-216ENST00000593099 KRTAP5-8O75690 187 aa2.02□□□□□ -2.09
LIG3-216ENST00000593099 KRTAP4-4Q9BYR3 166 aa1.91□□□□□ -2.1
LIG3-216ENST00000593099 KRTAP5-10Q6L8G5 202 aa1.86□□□□□ -2.11
LIG3-216ENST00000593099 KRTAP5-1Q6L8H4 278 aa1.82□□□□□ -2.12
LIG3-216ENST00000593099 AHNAKQ09666 5890 aaKnown RBP1.8□□□□□ -2.12
LIG3-216ENST00000593099 KRTAP5-7Q6L8G8 165 aa1.8□□□□□ -2.12
LIG3-216ENST00000593099 KRTAP5-11Q6L8G4 156 aa1.72□□□□□ -2.13
LIG3-216ENST00000593099 MUC5BQ9HC84 5762 aaPredicted RBP1.7□□□□□ -2.14
LIG3-216ENST00000593099 PHGR1C9JFL3 82 aa1.63□□□□□ -2.15
LIG3-216ENST00000593099 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.6□□□□□ -2.15
LIG3-216ENST00000593099 KRTAP21-2Q3LI59 83 aa1.58□□□□□ -2.16
LIG3-216ENST00000593099 KRTAP21-1Q3LI58 79 aa1.34□□□□□ -2.2
LIG3-216ENST00000593099 MUC16Q8WXI7 14507 aa0.98□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 53.9 ms