RNA–Protein interactions for RNA: ENST00000592705.5

DNMT1-228, Transcript of DNA methyltransferase 1, humanhuman

TSL 1 (best)

Gene DNMT1, Length 5,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-228ENST00000592705 FSIP2Q5CZC0 6907 aa4.2□□□□□ -1.74
DNMT1-228ENST00000592705 SYNE1Q8NF91 8797 aaKnown RBP4.18□□□□□ -1.74
DNMT1-228ENST00000592705 MT4P47944 62 aa4.18□□□□□ -1.74
DNMT1-228ENST00000592705 MT1LQ93083 61 aa4.18□□□□□ -1.74
DNMT1-228ENST00000592705 MT1EP04732 61 aa4.14□□□□□ -1.75
DNMT1-228ENST00000592705 RNF213Q63HN8 5207 aa4.14□□□□□ -1.75
DNMT1-228ENST00000592705 KRTAP4-7Q9BYR0 210 aa4.13□□□□□ -1.75
DNMT1-228ENST00000592705 SYNE2Q8WXH0 6885 aaKnown RBP4.1□□□□□ -1.75
DNMT1-228ENST00000592705 KRTAP6-3Q3LI67 103 aa4.09□□□□□ -1.75
DNMT1-228ENST00000592705 LCE3DQ9BYE3 92 aa4.09□□□□□ -1.76
DNMT1-228ENST00000592705 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.05□□□□□ -1.76
DNMT1-228ENST00000592705 KRTAP2-3P0C7H8 128 aa4.04□□□□□ -1.76
DNMT1-228ENST00000592705 LCE3EQ5T5B0 92 aa4.04□□□□□ -1.76
DNMT1-228ENST00000592705 KRTAP2-4Q9BYR9 128 aa4.04□□□□□ -1.76
DNMT1-228ENST00000592705 FAT4Q6V0I7 4981 aa4.04□□□□□ -1.76
DNMT1-228ENST00000592705 MT1MQ8N339 61 aa4.01□□□□□ -1.77
DNMT1-228ENST00000592705 MT3P25713 68 aa3.99□□□□□ -1.77
DNMT1-228ENST00000592705 MUC2Q02817 5179 aa3.96□□□□□ -1.78
DNMT1-228ENST00000592705 LCE1AQ5T7P2 110 aa3.94□□□□□ -1.78
DNMT1-228ENST00000592705 HMCN2Q8NDA2 5059 aa3.92□□□□□ -1.78
DNMT1-228ENST00000592705 KRTAP19-7Q3SYF9 63 aa3.92□□□□□ -1.78
DNMT1-228ENST00000592705 KRTAP2-2Q9BYT5 123 aa3.9□□□□□ -1.79
DNMT1-228ENST00000592705 KRTAP2-1Q9BYU5 128 aa3.9□□□□□ -1.79
DNMT1-228ENST00000592705 LOC100996750A0A140TA64 210 aa3.88□□□□□ -1.79
DNMT1-228ENST00000592705 KRTAP4-3Q9BYR4 195 aa3.84□□□□□ -1.79
DNMT1-228ENST00000592705 LCE1DQ5T752 114 aa3.83□□□□□ -1.8
DNMT1-228ENST00000592705 LCE1BQ5T7P3 118 aa3.82□□□□□ -1.8
DNMT1-228ENST00000592705 LCE4AQ5TA78 99 aa3.77□□□□□ -1.81
DNMT1-228ENST00000592705 PRM1P04553 51 aa3.75□□□□□ -1.81
DNMT1-228ENST00000592705 MACF1Q9UPN3 7388 aaKnown RBP3.74□□□□□ -1.81
DNMT1-228ENST00000592705 MT1AP04731 61 aa3.72□□□□□ -1.81
DNMT1-228ENST00000592705 KRTAP9-6A8MVA2 160 aa3.69□□□□□ -1.82
DNMT1-228ENST00000592705 KRTAP4-9Q9BYQ8 210 aa3.68□□□□□ -1.82
DNMT1-228ENST00000592705 LCE5AQ5TCM9 118 aa3.67□□□□□ -1.82
DNMT1-228ENST00000592705 OBSCNQ5VST9 7968 aa3.64□□□□□ -1.83
DNMT1-228ENST00000592705 GPR98Q8WXG9 6306 aa3.64□□□□□ -1.83
DNMT1-228ENST00000592705 NEBP20929 6669 aa3.51□□□□□ -1.85
DNMT1-228ENST00000592705 KRTAP6-1Q3LI64 71 aa3.5□□□□□ -1.85
DNMT1-228ENST00000592705 KMT2DO14686 5537 aa3.47□□□□□ -1.85
DNMT1-228ENST00000592705 DSTQ03001 7570 aaKnown RBP3.46□□□□□ -1.86
DNMT1-228ENST00000592705 KRTAP6-2Q3LI66 62 aa3.43□□□□□ -1.86
DNMT1-228ENST00000592705 KRTAP9-4Q9BYQ2 154 aa3.42□□□□□ -1.86
DNMT1-228ENST00000592705 USH2AO75445 5202 aa3.4□□□□□ -1.86
DNMT1-228ENST00000592705 KRTAP9-9Q9BYP9 154 aa3.37□□□□□ -1.87
DNMT1-228ENST00000592705 LCE1CQ5T751 118 aa3.36□□□□□ -1.87
DNMT1-228ENST00000592705 LCE1EQ5T753 118 aa3.36□□□□□ -1.87
DNMT1-228ENST00000592705 LCE1FQ5T754 118 aa3.36□□□□□ -1.87
DNMT1-228ENST00000592705 KRTAP5-9P26371 169 aa3.34□□□□□ -1.87
DNMT1-228ENST00000592705 MDN1Q9NU22 5596 aa3.33□□□□□ -1.88
DNMT1-228ENST00000592705 SSPOA2VEC9 5147 aa3.3□□□□□ -1.88
DNMT1-228ENST00000592705 FCGBPQ9Y6R7 5405 aaPredicted RBP3.23□□□□□ -1.89
DNMT1-228ENST00000592705 KRTAP4-6Q9BYQ5 205 aa3.06□□□□□ -1.92
DNMT1-228ENST00000592705 KRTAP20-2Q3LI61 65 aa3.06□□□□□ -1.92
DNMT1-228ENST00000592705 MUC19Q7Z5P9 8384 aa2.99□□□□□ -1.93
DNMT1-228ENST00000592705 MUC12Q9UKN1 5478 aa2.91□□□□□ -1.94
DNMT1-228ENST00000592705 KRTAP5-4Q6L8H1 288 aa2.9□□□□□ -1.95
DNMT1-228ENST00000592705 KRTAP4-11Q9BYQ6 195 aa2.85□□□□□ -1.95
DNMT1-228ENST00000592705 AHNAK2Q8IVF2 5795 aa2.83□□□□□ -1.96
DNMT1-228ENST00000592705 KRTAP5-5Q701N2 237 aaPredicted RBP2.81□□□□□ -1.96
DNMT1-228ENST00000592705 KRTAP5-3Q6L8H2 238 aa2.73□□□□□ -1.97
DNMT1-228ENST00000592705 KRTAP4-12Q9BQ66 201 aa2.69□□□□□ -1.98
DNMT1-228ENST00000592705 KRTAP4-2Q9BYR5 136 aa2.69□□□□□ -1.98
DNMT1-228ENST00000592705 HMCN1Q96RW7 5635 aa2.63□□□□□ -1.99
DNMT1-228ENST00000592705 MUC5ACP98088 5654 aa2.54□□□□□ -2
DNMT1-228ENST00000592705 KRTAP4-4Q9BYR3 166 aa2.54□□□□□ -2
DNMT1-228ENST00000592705 KRTAP5-8O75690 187 aa2.41□□□□□ -2.02
DNMT1-228ENST00000592705 AHNAKQ09666 5890 aaKnown RBP2.29□□□□□ -2.04
DNMT1-228ENST00000592705 PHGR1C9JFL3 82 aa2.26□□□□□ -2.05
DNMT1-228ENST00000592705 KRTAP5-2Q701N4 177 aa2.22□□□□□ -2.05
DNMT1-228ENST00000592705 KRTAP5-10Q6L8G5 202 aa2.21□□□□□ -2.06
DNMT1-228ENST00000592705 MUC5BQ9HC84 5762 aaPredicted RBP2.17□□□□□ -2.06
DNMT1-228ENST00000592705 KRTAP5-7Q6L8G8 165 aa2.03□□□□□ -2.08
DNMT1-228ENST00000592705 KRTAP5-11Q6L8G4 156 aa1.97□□□□□ -2.09
DNMT1-228ENST00000592705 KRTAP5-1Q6L8H4 278 aa1.91□□□□□ -2.1
DNMT1-228ENST00000592705 KRTAP21-2Q3LI59 83 aa1.89□□□□□ -2.11
DNMT1-228ENST00000592705 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.81□□□□□ -2.12
DNMT1-228ENST00000592705 KRTAP21-1Q3LI58 79 aa1.79□□□□□ -2.12
DNMT1-228ENST00000592705 MUC16Q8WXI7 14507 aa1.26□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 11.1 ms