RNA–Protein interactions for RNA: ENST00000584377.5

CSNK1D-222, Transcript of casein kinase 1 delta, human

TSL 2

Gene CSNK1D, Length 2,891 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSNK1D-222	ENST00000584377	KRTAP2-4	Q9BYR9	128 aa		4.55	□□□□□ -1.68
CSNK1D-222	ENST00000584377	KRTAP2-1	Q9BYU5	128 aa		4.55	□□□□□ -1.68
CSNK1D-222	ENST00000584377	DST	Q03001	7570 aa	Known RBP	4.43	□□□□□ -1.7
CSNK1D-222	ENST00000584377	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.42	□□□□□ -1.7
CSNK1D-222	ENST00000584377	MUC12	Q9UKN1	5478 aa		4.37	□□□□□ -1.71
CSNK1D-222	ENST00000584377	KRTAP4-3	Q9BYR4	195 aa		4.34	□□□□□ -1.71
CSNK1D-222	ENST00000584377	KRTAP19-3	Q7Z4W3	81 aa		4.34	□□□□□ -1.72
CSNK1D-222	ENST00000584377	MT1G	P13640	62 aa		4.32	□□□□□ -1.72
CSNK1D-222	ENST00000584377	MT1M	Q8N339	61 aa		4.32	□□□□□ -1.72
CSNK1D-222	ENST00000584377	LOC100996750	A0A140TA64	210 aa		4.3	□□□□□ -1.72
CSNK1D-222	ENST00000584377	CRCT1	Q9UGL9	99 aa		4.27	□□□□□ -1.73
CSNK1D-222	ENST00000584377	SPRR2F	Q96RM1	72 aa		4.23	□□□□□ -1.73
CSNK1D-222	ENST00000584377	LCE5A	Q5TCM9	118 aa		4.2	□□□□□ -1.74
CSNK1D-222	ENST00000584377	MACF1	Q9UPN3	7388 aa	Known RBP	4.19	□□□□□ -1.74
CSNK1D-222	ENST00000584377	SYNE1	Q8NF91	8797 aa	Known RBP	4.17	□□□□□ -1.74
CSNK1D-222	ENST00000584377	KRTAP12-4	P60329	112 aa		4.16	□□□□□ -1.74
CSNK1D-222	ENST00000584377	OBSCN	Q5VST9	7968 aa		4.09	□□□□□ -1.76
CSNK1D-222	ENST00000584377	SYNE2	Q8WXH0	6885 aa	Known RBP	4.07	□□□□□ -1.76
CSNK1D-222	ENST00000584377	MDN1	Q9NU22	5596 aa		4.02	□□□□□ -1.77
CSNK1D-222	ENST00000584377	KRTAP9-2	Q9BYQ4	174 aa		4.01	□□□□□ -1.77
CSNK1D-222	ENST00000584377	KRTAP5-9	P26371	169 aa		3.95	□□□□□ -1.78
CSNK1D-222	ENST00000584377	LCE1A	Q5T7P2	110 aa		3.95	□□□□□ -1.78
CSNK1D-222	ENST00000584377	LCE3B	Q5TA77	95 aa		3.94	□□□□□ -1.78
CSNK1D-222	ENST00000584377	KRTAP4-9	Q9BYQ8	210 aa		3.92	□□□□□ -1.78
CSNK1D-222	ENST00000584377	KRTAP6-1	Q3LI64	71 aa		3.89	□□□□□ -1.79
CSNK1D-222	ENST00000584377	MT1A	P04731	61 aa		3.87	□□□□□ -1.79
CSNK1D-222	ENST00000584377	SPRR2E	P22531	72 aa		3.86	□□□□□ -1.79
CSNK1D-222	ENST00000584377	SPRR2B	P35325	72 aa		3.86	□□□□□ -1.79
CSNK1D-222	ENST00000584377	SPRR2A	P35326	72 aa		3.86	□□□□□ -1.79
CSNK1D-222	ENST00000584377	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.82	□□□□□ -1.8
CSNK1D-222	ENST00000584377	PRM1	P04553	51 aa		3.74	□□□□□ -1.81
CSNK1D-222	ENST00000584377	KRTAP9-7	A8MTY7	169 aa		3.73	□□□□□ -1.81
CSNK1D-222	ENST00000584377	LCE3D	Q9BYE3	92 aa		3.7	□□□□□ -1.82
CSNK1D-222	ENST00000584377	SPRR2D	P22532	72 aa		3.7	□□□□□ -1.82
CSNK1D-222	ENST00000584377	LCE3E	Q5T5B0	92 aa		3.66	□□□□□ -1.82
CSNK1D-222	ENST00000584377	KRTAP6-3	Q3LI67	103 aa		3.64	□□□□□ -1.83
CSNK1D-222	ENST00000584377	KRTAP9-4	Q9BYQ2	154 aa		3.64	□□□□□ -1.83
CSNK1D-222	ENST00000584377	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	3.62	□□□□□ -1.83
CSNK1D-222	ENST00000584377	KRTAP9-6	A0A140TA67	174 aa		3.61	□□□□□ -1.83
CSNK1D-222	ENST00000584377	KRTAP2-2	Q9BYT5	123 aa		3.58	□□□□□ -1.84
CSNK1D-222	ENST00000584377	KRTAP6-2	Q3LI66	62 aa		3.51	□□□□□ -1.85
CSNK1D-222	ENST00000584377	MT3	P25713	68 aa		3.49	□□□□□ -1.85
CSNK1D-222	ENST00000584377	LCE1E	Q5T753	118 aa		3.43	□□□□□ -1.86
CSNK1D-222	ENST00000584377	NEB	P20929	6669 aa		3.41	□□□□□ -1.86
CSNK1D-222	ENST00000584377	KRTAP5-4	Q6L8H1	288 aa		3.4	□□□□□ -1.86
CSNK1D-222	ENST00000584377	KRTAP4-6	Q9BYQ5	205 aa		3.28	□□□□□ -1.88
CSNK1D-222	ENST00000584377	LCE1D	Q5T752	114 aa		3.27	□□□□□ -1.89
CSNK1D-222	ENST00000584377	MT4	P47944	62 aa		3.26	□□□□□ -1.89
CSNK1D-222	ENST00000584377	LCE4A	Q5TA78	99 aa		3.21	□□□□□ -1.9
CSNK1D-222	ENST00000584377	KRTAP20-2	Q3LI61	65 aa		3.2	□□□□□ -1.9
CSNK1D-222	ENST00000584377	KRTAP5-2	Q701N4	177 aa		3.16	□□□□□ -1.9
CSNK1D-222	ENST00000584377	HMCN1	Q96RW7	5635 aa		3.14	□□□□□ -1.91
CSNK1D-222	ENST00000584377	LCE1F	Q5T754	118 aa		3.08	□□□□□ -1.92
CSNK1D-222	ENST00000584377	KRTAP20-1	Q3LI63	56 aa		3.04	□□□□□ -1.92
CSNK1D-222	ENST00000584377	KRTAP5-3	Q6L8H2	238 aa		3.04	□□□□□ -1.92
CSNK1D-222	ENST00000584377	KRTAP9-9	Q9BYP9	154 aa		3.03	□□□□□ -1.92
CSNK1D-222	ENST00000584377	MUC5AC	P98088	5654 aa		2.93	□□□□□ -1.94
CSNK1D-222	ENST00000584377	LCE1B	Q5T7P3	118 aa		2.82	□□□□□ -1.96
CSNK1D-222	ENST00000584377	KRTAP4-11	Q9BYQ6	195 aa		2.79	□□□□□ -1.96
CSNK1D-222	ENST00000584377	MUC19	Q7Z5P9	8384 aa		2.74	□□□□□ -1.97
CSNK1D-222	ENST00000584377	KRTAP5-10	Q6L8G5	202 aa		2.72	□□□□□ -1.97
CSNK1D-222	ENST00000584377	KRTAP4-2	Q9BYR5	136 aa		2.71	□□□□□ -1.97
CSNK1D-222	ENST00000584377	LCE1C	Q5T751	118 aa		2.71	□□□□□ -1.98
CSNK1D-222	ENST00000584377	KRTAP5-1	Q6L8H4	278 aa		2.7	□□□□□ -1.98
CSNK1D-222	ENST00000584377	KRTAP4-12	Q9BQ66	201 aa		2.57	□□□□□ -2
CSNK1D-222	ENST00000584377	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.55	□□□□□ -2
CSNK1D-222	ENST00000584377	KRTAP5-8	O75690	187 aa		2.54	□□□□□ -2
CSNK1D-222	ENST00000584377	KRTAP21-2	Q3LI59	83 aa		2.52	□□□□□ -2.01
CSNK1D-222	ENST00000584377	AHNAK2	Q8IVF2	5795 aa		2.5	□□□□□ -2.01
CSNK1D-222	ENST00000584377	KRTAP5-7	Q6L8G8	165 aa		2.5	□□□□□ -2.01
CSNK1D-222	ENST00000584377	KRTAP4-4	Q9BYR3	166 aa		2.4	□□□□□ -2.03
CSNK1D-222	ENST00000584377	KRTAP21-1	Q3LI58	79 aa		2.39	□□□□□ -2.03
CSNK1D-222	ENST00000584377	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.34	□□□□□ -2.03
CSNK1D-222	ENST00000584377	KRTAP5-11	Q6L8G4	156 aa		2.33	□□□□□ -2.04
CSNK1D-222	ENST00000584377	GPR98	Q8WXG9	6306 aa		2.32	□□□□□ -2.04
CSNK1D-222	ENST00000584377	PHGR1	C9JFL3	82 aa		2.02	□□□□□ -2.09
CSNK1D-222	ENST00000584377	AHNAK	Q09666	5890 aa	Known RBP	1.88	□□□□□ -2.11
CSNK1D-222	ENST00000584377	MUC16	Q8WXI7	14507 aa		1.3	□□□□□ -2.2

Retrieved 78 of 20,778 RNA–protein pairs in 51.9 ms