RNA–Protein interactions for RNA: ENST00000579483.1

MSI2-209, Transcript of musashi RNA binding protein 2, humanhuman

TSL 1 (best)

Gene MSI2, Length 5,141 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSI2-209ENST00000579483 KRTAP20-1Q3LI63 56 aa3.32□□□□□ -1.88
MSI2-209ENST00000579483 KRTAP6-3Q3LI67 103 aa3.32□□□□□ -1.88
MSI2-209ENST00000579483 MT1MQ8N339 61 aa3.31□□□□□ -1.88
MSI2-209ENST00000579483 LPAP08519 4548 aa3.29□□□□□ -1.88
MSI2-209ENST00000579483 FAT4Q6V0I7 4981 aa3.29□□□□□ -1.88
MSI2-209ENST00000579483 LCE3DQ9BYE3 92 aa3.29□□□□□ -1.88
MSI2-209ENST00000579483 MT3P25713 68 aa3.27□□□□□ -1.89
MSI2-209ENST00000579483 LCE1AQ5T7P2 110 aa3.27□□□□□ -1.89
MSI2-209ENST00000579483 MT4P47944 62 aa3.25□□□□□ -1.89
MSI2-209ENST00000579483 LCE3EQ5T5B0 92 aa3.23□□□□□ -1.89
MSI2-209ENST00000579483 KRTAP2-3P0C7H8 128 aa3.23□□□□□ -1.89
MSI2-209ENST00000579483 KRTAP2-4Q9BYR9 128 aa3.23□□□□□ -1.89
MSI2-209ENST00000579483 SPRR5A0A1B0GTR4 108 aa3.22□□□□□ -1.89
MSI2-209ENST00000579483 HMCN2Q8NDA2 5059 aa3.21□□□□□ -1.89
MSI2-209ENST00000579483 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.2□□□□□ -1.9
MSI2-209ENST00000579483 KRTAP4-7Q9BYR0 210 aa3.15□□□□□ -1.9
MSI2-209ENST00000579483 KRTAP19-7Q3SYF9 63 aa3.12□□□□□ -1.91
MSI2-209ENST00000579483 KRTAP2-2Q9BYT5 123 aa3.11□□□□□ -1.91
MSI2-209ENST00000579483 KRTAP2-1Q9BYU5 128 aa3.11□□□□□ -1.91
MSI2-209ENST00000579483 MT1AP04731 61 aa3.1□□□□□ -1.91
MSI2-209ENST00000579483 LCE4AQ5TA78 99 aa3.09□□□□□ -1.91
MSI2-209ENST00000579483 FSIP2Q5CZC0 6907 aa3.08□□□□□ -1.92
MSI2-209ENST00000579483 SYNE2Q8WXH0 6885 aaKnown RBP3.07□□□□□ -1.92
MSI2-209ENST00000579483 MUC2Q02817 5179 aa3.02□□□□□ -1.93
MSI2-209ENST00000579483 SYNE1Q8NF91 8797 aaKnown RBP3.02□□□□□ -1.93
MSI2-209ENST00000579483 KRTAP4-3Q9BYR4 195 aa3.01□□□□□ -1.93
MSI2-209ENST00000579483 LCE1DQ5T752 114 aa3□□□□□ -1.93
MSI2-209ENST00000579483 LCE1BQ5T7P3 118 aa2.98□□□□□ -1.93
MSI2-209ENST00000579483 LOC100996750A0A140TA64 210 aa2.98□□□□□ -1.93
MSI2-209ENST00000579483 LCE5AQ5TCM9 118 aa2.97□□□□□ -1.93
MSI2-209ENST00000579483 KRTAP5-9P26371 169 aa2.97□□□□□ -1.93
MSI2-209ENST00000579483 KRTAP9-4Q9BYQ2 154 aa2.85□□□□□ -1.95
MSI2-209ENST00000579483 KRTAP4-9Q9BYQ8 210 aa2.84□□□□□ -1.96
MSI2-209ENST00000579483 KRTAP6-2Q3LI66 62 aa2.79□□□□□ -1.96
MSI2-209ENST00000579483 KRTAP6-1Q3LI64 71 aa2.78□□□□□ -1.96
MSI2-209ENST00000579483 PRM1P04553 51 aa2.76□□□□□ -1.97
MSI2-209ENST00000579483 USH2AO75445 5202 aa2.73□□□□□ -1.97
MSI2-209ENST00000579483 OBSCNQ5VST9 7968 aa2.73□□□□□ -1.97
MSI2-209ENST00000579483 NEBP20929 6669 aa2.72□□□□□ -1.97
MSI2-209ENST00000579483 SSPOA2VEC9 5147 aa2.7□□□□□ -1.98
MSI2-209ENST00000579483 KRTAP9-9Q9BYP9 154 aa2.65□□□□□ -1.98
MSI2-209ENST00000579483 KRTAP9-6A8MVA2 160 aa2.6□□□□□ -1.99
MSI2-209ENST00000579483 MACF1Q9UPN3 7388 aaKnown RBP2.59□□□□□ -1.99
MSI2-209ENST00000579483 LCE1CQ5T751 118 aa2.58□□□□□ -2
MSI2-209ENST00000579483 LCE1EQ5T753 118 aa2.58□□□□□ -2
MSI2-209ENST00000579483 LCE1FQ5T754 118 aa2.58□□□□□ -2
MSI2-209ENST00000579483 FCGBPQ9Y6R7 5405 aaPredicted RBP2.56□□□□□ -2
MSI2-209ENST00000579483 GPR98Q8WXG9 6306 aa2.54□□□□□ -2
MSI2-209ENST00000579483 KMT2DO14686 5537 aa2.54□□□□□ -2
MSI2-209ENST00000579483 KRTAP5-4Q6L8H1 288 aa2.5□□□□□ -2.01
MSI2-209ENST00000579483 KRTAP20-2Q3LI61 65 aa2.5□□□□□ -2.01
MSI2-209ENST00000579483 MDN1Q9NU22 5596 aa2.46□□□□□ -2.02
MSI2-209ENST00000579483 DSTQ03001 7570 aaKnown RBP2.46□□□□□ -2.02
MSI2-209ENST00000579483 KRTAP4-6Q9BYQ5 205 aa2.44□□□□□ -2.02
MSI2-209ENST00000579483 KRTAP5-5Q701N2 237 aaPredicted RBP2.31□□□□□ -2.04
MSI2-209ENST00000579483 KRTAP4-11Q9BYQ6 195 aa2.29□□□□□ -2.04
MSI2-209ENST00000579483 MUC12Q9UKN1 5478 aa2.26□□□□□ -2.05
MSI2-209ENST00000579483 KRTAP5-3Q6L8H2 238 aa2.16□□□□□ -2.06
MSI2-209ENST00000579483 AHNAK2Q8IVF2 5795 aa2.15□□□□□ -2.06
MSI2-209ENST00000579483 MUC19Q7Z5P9 8384 aa2.13□□□□□ -2.07
MSI2-209ENST00000579483 KRTAP5-2Q701N4 177 aa2.12□□□□□ -2.07
MSI2-209ENST00000579483 KRTAP4-12Q9BQ66 201 aa2.08□□□□□ -2.08
MSI2-209ENST00000579483 KRTAP4-2Q9BYR5 136 aa2.05□□□□□ -2.08
MSI2-209ENST00000579483 HMCN1Q96RW7 5635 aa2.04□□□□□ -2.08
MSI2-209ENST00000579483 KRTAP5-8O75690 187 aa2.02□□□□□ -2.09
MSI2-209ENST00000579483 KRTAP5-7Q6L8G8 165 aa1.98□□□□□ -2.09
MSI2-209ENST00000579483 MUC5ACP98088 5654 aa1.96□□□□□ -2.1
MSI2-209ENST00000579483 KRTAP4-4Q9BYR3 166 aa1.96□□□□□ -2.1
MSI2-209ENST00000579483 KRTAP5-10Q6L8G5 202 aa1.86□□□□□ -2.11
MSI2-209ENST00000579483 AHNAKQ09666 5890 aaKnown RBP1.85□□□□□ -2.11
MSI2-209ENST00000579483 KRTAP5-1Q6L8H4 278 aa1.8□□□□□ -2.12
MSI2-209ENST00000579483 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.78□□□□□ -2.13
MSI2-209ENST00000579483 MUC5BQ9HC84 5762 aaPredicted RBP1.77□□□□□ -2.13
MSI2-209ENST00000579483 KRTAP5-11Q6L8G4 156 aa1.76□□□□□ -2.13
MSI2-209ENST00000579483 PHGR1C9JFL3 82 aa1.72□□□□□ -2.13
MSI2-209ENST00000579483 KRTAP21-2Q3LI59 83 aa1.45□□□□□ -2.18
MSI2-209ENST00000579483 KRTAP21-1Q3LI58 79 aa1.3□□□□□ -2.2
MSI2-209ENST00000579483 MUC16Q8WXI7 14507 aa1.04□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 157.7 ms