RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 STAB1Q9NY15 2570 aa1.38□□□□□ -2.19
VPS39-212ENST00000570023 HYDINQ4G0P3 5121 aa1.35□□□□□ -2.19
VPS39-212ENST00000570023 KRTAP19-5Q3LI72 72 aa1.35□□□□□ -2.19
VPS39-212ENST00000570023 FLGP20930 4061 aaPredicted RBP1.33□□□□□ -2.2
VPS39-212ENST00000570023 KRTAP19-2Q3LHN2 52 aa1.33□□□□□ -2.2
VPS39-212ENST00000570023 KRTAP21-2Q3LI59 83 aa1.33□□□□□ -2.2
VPS39-212ENST00000570023 J3QKU1 62 aa1.32□□□□□ -2.2
VPS39-212ENST00000570023 DNHD1Q96M86 4753 aa1.31□□□□□ -2.2
VPS39-212ENST00000570023 KRTAP19-8Q3LI54 63 aa1.29□□□□□ -2.2
VPS39-212ENST00000570023 HERC1Q15751 4861 aa1.29□□□□□ -2.2
VPS39-212ENST00000570023 MT1AP04731 61 aa1.27□□□□□ -2.21
VPS39-212ENST00000570023 PRM1P04553 51 aa1.26□□□□□ -2.21
VPS39-212ENST00000570023 MT1HL1P0DM35 61 aa1.26□□□□□ -2.21
VPS39-212ENST00000570023 MT1XP80297 61 aa1.26□□□□□ -2.21
VPS39-212ENST00000570023 MUC17Q685J3 4493 aa1.25□□□□□ -2.21
VPS39-212ENST00000570023 LPAP08519 4548 aa1.25□□□□□ -2.21
VPS39-212ENST00000570023 MT1EP04732 61 aa1.23□□□□□ -2.21
VPS39-212ENST00000570023 HMCN1Q96RW7 5635 aa1.23□□□□□ -2.21
VPS39-212ENST00000570023 KMT2CQ8NEZ4 4911 aaKnown RBP1.23□□□□□ -2.21
VPS39-212ENST00000570023 KRTAP4-1Q9BYQ7 146 aa1.22□□□□□ -2.21
VPS39-212ENST00000570023 RYR2Q92736 4967 aa1.21□□□□□ -2.21
VPS39-212ENST00000570023 KRTAP21-3Q3LHN1 58 aa1.21□□□□□ -2.22
VPS39-212ENST00000570023 LRP2P98164 4655 aa1.2□□□□□ -2.22
VPS39-212ENST00000570023 MT1LQ93083 61 aa1.2□□□□□ -2.22
VPS39-212ENST00000570023 RYR1P21817 5038 aa1.2□□□□□ -2.22
VPS39-212ENST00000570023 MT1BP07438 61 aa1.17□□□□□ -2.22
VPS39-212ENST00000570023 RYR3Q15413 4870 aa1.17□□□□□ -2.22
VPS39-212ENST00000570023 CRCT1Q9UGL9 99 aa1.16□□□□□ -2.22
VPS39-212ENST00000570023 KRTAP19-7Q3SYF9 63 aa1.12□□□□□ -2.23
VPS39-212ENST00000570023 SPRR2AP35326 72 aa1.11□□□□□ -2.23
VPS39-212ENST00000570023 KRTAP6-2Q3LI66 62 aa1.11□□□□□ -2.23
VPS39-212ENST00000570023 SPRR2FQ96RM1 72 aa1.11□□□□□ -2.23
VPS39-212ENST00000570023 MT2AP02795 61 aa1.1□□□□□ -2.23
VPS39-212ENST00000570023 BIRC6Q9NR09 4857 aa1.1□□□□□ -2.23
VPS39-212ENST00000570023 MT1FP04733 61 aa1.09□□□□□ -2.23
VPS39-212ENST00000570023 SPRR2BP35325 72 aa1.09□□□□□ -2.23
VPS39-212ENST00000570023 ABCA13Q86UQ4 5058 aa1.08□□□□□ -2.24
VPS39-212ENST00000570023 MT1HP80294 61 aa1.08□□□□□ -2.24
VPS39-212ENST00000570023 HERC2O95714 4834 aa1.08□□□□□ -2.24
VPS39-212ENST00000570023 HMCN2Q8NDA2 5059 aa1.06□□□□□ -2.24
VPS39-212ENST00000570023 SPRR2DP22532 72 aa1.06□□□□□ -2.24
VPS39-212ENST00000570023 MUC2Q02817 5179 aa1.05□□□□□ -2.24
VPS39-212ENST00000570023 KIAA1109Q2LD37 5005 aa1.05□□□□□ -2.24
VPS39-212ENST00000570023 SYNE1Q8NF91 8797 aaKnown RBP1.05□□□□□ -2.24
VPS39-212ENST00000570023 PCLOQ9Y6V0 5065 aa1.03□□□□□ -2.24
VPS39-212ENST00000570023 SPRR2EP22531 72 aa1.03□□□□□ -2.24
VPS39-212ENST00000570023 MT1GP13640 62 aa1.02□□□□□ -2.25
VPS39-212ENST00000570023 EPPK1P58107 5090 aaKnown RBP1.01□□□□□ -2.25
VPS39-212ENST00000570023 UBR4Q5T4S7 5183 aa1.01□□□□□ -2.25
VPS39-212ENST00000570023 FCGBPQ9Y6R7 5405 aaPredicted RBP0.98□□□□□ -2.25
VPS39-212ENST00000570023 MT1MQ8N339 61 aa0.97□□□□□ -2.25
VPS39-212ENST00000570023 KRTAP19-3Q7Z4W3 81 aa0.95□□□□□ -2.26
VPS39-212ENST00000570023 FAT4Q6V0I7 4981 aa0.93□□□□□ -2.26
VPS39-212ENST00000570023 KRTAP6-1Q3LI64 71 aa0.92□□□□□ -2.26
VPS39-212ENST00000570023 KRTAP21-1Q3LI58 79 aa0.91□□□□□ -2.26
VPS39-212ENST00000570023 RNF213Q63HN8 5207 aa0.89□□□□□ -2.27
VPS39-212ENST00000570023 KMT2DO14686 5537 aa0.83□□□□□ -2.28
VPS39-212ENST00000570023 USH2AO75445 5202 aa0.83□□□□□ -2.28
VPS39-212ENST00000570023 SSPOA2VEC9 5147 aa0.81□□□□□ -2.28
VPS39-212ENST00000570023 KRTAP5-10Q6L8G5 202 aa0.81□□□□□ -2.28
VPS39-212ENST00000570023 KRTAP19-6Q3LI70 58 aa0.73□□□□□ -2.29
VPS39-212ENST00000570023 MUC12Q9UKN1 5478 aa0.69□□□□□ -2.3
VPS39-212ENST00000570023 MDN1Q9NU22 5596 aa0.68□□□□□ -2.3
VPS39-212ENST00000570023 AHNAK2Q8IVF2 5795 aa0.64□□□□□ -2.31
VPS39-212ENST00000570023 MUC5ACP98088 5654 aa0.59□□□□□ -2.31
VPS39-212ENST00000570023 MUC16Q8WXI7 14507 aa0.59□□□□□ -2.32
VPS39-212ENST00000570023 SYNE2Q8WXH0 6885 aaKnown RBP0.59□□□□□ -2.32
VPS39-212ENST00000570023 DSTQ03001 7570 aaKnown RBP0.59□□□□□ -2.32
VPS39-212ENST00000570023 FSIP2Q5CZC0 6907 aa0.57□□□□□ -2.32
VPS39-212ENST00000570023 MACF1Q9UPN3 7388 aaKnown RBP0.55□□□□□ -2.32
VPS39-212ENST00000570023 AHNAKQ09666 5890 aaKnown RBP0.49□□□□□ -2.33
VPS39-212ENST00000570023 KRTAP20-2Q3LI61 65 aa0.49□□□□□ -2.33
VPS39-212ENST00000570023 MUC5BQ9HC84 5762 aaPredicted RBP0.49□□□□□ -2.33
VPS39-212ENST00000570023 NEBP20929 6669 aa0.47□□□□□ -2.33
VPS39-212ENST00000570023 MT4P47944 62 aa0.42□□□□□ -2.34
VPS39-212ENST00000570023 KRTAP20-1Q3LI63 56 aa0.41□□□□□ -2.34
VPS39-212ENST00000570023 PHGR1C9JFL3 82 aa0.4□□□□□ -2.35
VPS39-212ENST00000570023 GPR98Q8WXG9 6306 aa0.25□□□□□ -2.37
Retrieved 78 of 20,778 RNA–protein pairs in 108.4 ms