RNA–Protein interactions for RNA: ENST00000564068.1

COMMD4-209, Transcript of COMM domain containing 4, humanhuman

Gene COMMD4, Length 4,204 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-209ENST00000564068 SPRR2AP35326 72 aa4.25□□□□□ -1.73
COMMD4-209ENST00000564068 KRTAP19-4Q3LI73 84 aa4.22□□□□□ -1.73
COMMD4-209ENST00000564068 USH2AO75445 5202 aa4.21□□□□□ -1.73
COMMD4-209ENST00000564068 LCE3BQ5TA77 95 aa4.21□□□□□ -1.74
COMMD4-209ENST00000564068 KRTAP19-6Q3LI70 58 aa4.18□□□□□ -1.74
COMMD4-209ENST00000564068 MT1LQ93083 61 aa4.15□□□□□ -1.75
COMMD4-209ENST00000564068 KRTAP9-7A8MTY7 169 aa4.1□□□□□ -1.75
COMMD4-209ENST00000564068 KRTAP9-6A8MVA2 160 aa4.09□□□□□ -1.75
COMMD4-209ENST00000564068 SPRR2DP22532 72 aa4.09□□□□□ -1.75
COMMD4-209ENST00000564068 SYNE2Q8WXH0 6885 aaKnown RBP4.09□□□□□ -1.75
COMMD4-209ENST00000564068 MT1EP04732 61 aa4.08□□□□□ -1.76
COMMD4-209ENST00000564068 LOC100996750A0A140TA64 210 aa4.07□□□□□ -1.76
COMMD4-209ENST00000564068 KRTAP19-7Q3SYF9 63 aa4.04□□□□□ -1.76
COMMD4-209ENST00000564068 KRTAP4-3Q9BYR4 195 aa4.03□□□□□ -1.76
COMMD4-209ENST00000564068 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.03□□□□□ -1.76
COMMD4-209ENST00000564068 KRTAP2-3P0C7H8 128 aa4.02□□□□□ -1.77
COMMD4-209ENST00000564068 KRTAP2-4Q9BYR9 128 aa4.02□□□□□ -1.77
COMMD4-209ENST00000564068 KRTAP2-1Q9BYU5 128 aa4.02□□□□□ -1.77
COMMD4-209ENST00000564068 FCGBPQ9Y6R7 5405 aaPredicted RBP4.01□□□□□ -1.77
COMMD4-209ENST00000564068 KMT2DO14686 5537 aa4.01□□□□□ -1.77
COMMD4-209ENST00000564068 DSTQ03001 7570 aaKnown RBP3.99□□□□□ -1.77
COMMD4-209ENST00000564068 LCE3DQ9BYE3 92 aa3.98□□□□□ -1.77
COMMD4-209ENST00000564068 SSPOA2VEC9 5147 aa3.94□□□□□ -1.78
COMMD4-209ENST00000564068 MACF1Q9UPN3 7388 aaKnown RBP3.94□□□□□ -1.78
COMMD4-209ENST00000564068 KRTAP19-3Q7Z4W3 81 aa3.94□□□□□ -1.78
COMMD4-209ENST00000564068 LCE3EQ5T5B0 92 aa3.92□□□□□ -1.78
COMMD4-209ENST00000564068 MT1MQ8N339 61 aa3.88□□□□□ -1.79
COMMD4-209ENST00000564068 KRTAP4-9Q9BYQ8 210 aa3.86□□□□□ -1.79
COMMD4-209ENST00000564068 KRTAP6-3Q3LI67 103 aa3.84□□□□□ -1.79
COMMD4-209ENST00000564068 PRM1P04553 51 aa3.82□□□□□ -1.8
COMMD4-209ENST00000564068 KRTAP20-1Q3LI63 56 aa3.76□□□□□ -1.81
COMMD4-209ENST00000564068 MUC12Q9UKN1 5478 aa3.74□□□□□ -1.81
COMMD4-209ENST00000564068 MT4P47944 62 aa3.7□□□□□ -1.82
COMMD4-209ENST00000564068 LCE1AQ5T7P2 110 aa3.65□□□□□ -1.83
COMMD4-209ENST00000564068 MDN1Q9NU22 5596 aa3.57□□□□□ -1.84
COMMD4-209ENST00000564068 KRTAP6-1Q3LI64 71 aa3.55□□□□□ -1.84
COMMD4-209ENST00000564068 MT1AP04731 61 aa3.54□□□□□ -1.84
COMMD4-209ENST00000564068 NEBP20929 6669 aa3.54□□□□□ -1.84
COMMD4-209ENST00000564068 KRTAP2-2Q9BYT5 123 aa3.53□□□□□ -1.84
COMMD4-209ENST00000564068 LCE5AQ5TCM9 118 aa3.52□□□□□ -1.85
COMMD4-209ENST00000564068 MT3P25713 68 aa3.49□□□□□ -1.85
COMMD4-209ENST00000564068 LCE4AQ5TA78 99 aa3.47□□□□□ -1.85
COMMD4-209ENST00000564068 KRTAP5-9P26371 169 aa3.46□□□□□ -1.86
COMMD4-209ENST00000564068 KRTAP6-2Q3LI66 62 aa3.45□□□□□ -1.86
COMMD4-209ENST00000564068 KRTAP9-4Q9BYQ2 154 aa3.3□□□□□ -1.88
COMMD4-209ENST00000564068 LCE1DQ5T752 114 aa3.24□□□□□ -1.89
COMMD4-209ENST00000564068 MUC19Q7Z5P9 8384 aa3.23□□□□□ -1.89
COMMD4-209ENST00000564068 LCE1BQ5T7P3 118 aa3.23□□□□□ -1.89
COMMD4-209ENST00000564068 GPR98Q8WXG9 6306 aa3.21□□□□□ -1.9
COMMD4-209ENST00000564068 KRTAP9-9Q9BYP9 154 aa3.13□□□□□ -1.91
COMMD4-209ENST00000564068 KRTAP4-6Q9BYQ5 205 aa3.12□□□□□ -1.91
COMMD4-209ENST00000564068 KRTAP5-5Q701N2 237 aaPredicted RBP3.11□□□□□ -1.91
COMMD4-209ENST00000564068 LCE1FQ5T754 118 aa3□□□□□ -1.93
COMMD4-209ENST00000564068 KRTAP20-2Q3LI61 65 aa2.95□□□□□ -1.94
COMMD4-209ENST00000564068 KRTAP4-11Q9BYQ6 195 aa2.88□□□□□ -1.95
COMMD4-209ENST00000564068 LCE1EQ5T753 118 aa2.83□□□□□ -1.96
COMMD4-209ENST00000564068 HMCN1Q96RW7 5635 aa2.81□□□□□ -1.96
COMMD4-209ENST00000564068 KRTAP5-4Q6L8H1 288 aa2.77□□□□□ -1.97
COMMD4-209ENST00000564068 MUC5ACP98088 5654 aa2.74□□□□□ -1.97
COMMD4-209ENST00000564068 KRTAP5-3Q6L8H2 238 aa2.72□□□□□ -1.97
COMMD4-209ENST00000564068 KRTAP4-12Q9BQ66 201 aa2.66□□□□□ -1.98
COMMD4-209ENST00000564068 AHNAK2Q8IVF2 5795 aa2.59□□□□□ -1.99
COMMD4-209ENST00000564068 LCE1CQ5T751 118 aa2.58□□□□□ -2
COMMD4-209ENST00000564068 KRTAP4-4Q9BYR3 166 aa2.51□□□□□ -2.01
COMMD4-209ENST00000564068 KRTAP4-2Q9BYR5 136 aa2.47□□□□□ -2.01
COMMD4-209ENST00000564068 KRTAP5-8O75690 187 aa2.46□□□□□ -2.02
COMMD4-209ENST00000564068 KRTAP5-2Q701N4 177 aa2.36□□□□□ -2.03
COMMD4-209ENST00000564068 KRTAP5-10Q6L8G5 202 aa2.33□□□□□ -2.04
COMMD4-209ENST00000564068 MUC5BQ9HC84 5762 aaPredicted RBP2.25□□□□□ -2.05
COMMD4-209ENST00000564068 AHNAKQ09666 5890 aaKnown RBP2.22□□□□□ -2.05
COMMD4-209ENST00000564068 KRTAP5-7Q6L8G8 165 aa2.16□□□□□ -2.06
COMMD4-209ENST00000564068 KRTAP5-1Q6L8H4 278 aa2.16□□□□□ -2.06
COMMD4-209ENST00000564068 KRTAP21-2Q3LI59 83 aa1.99□□□□□ -2.09
COMMD4-209ENST00000564068 PHGR1C9JFL3 82 aa1.92□□□□□ -2.1
COMMD4-209ENST00000564068 KRTAP21-1Q3LI58 79 aa1.92□□□□□ -2.1
COMMD4-209ENST00000564068 KRTAP5-11Q6L8G4 156 aa1.9□□□□□ -2.11
COMMD4-209ENST00000564068 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.8□□□□□ -2.12
COMMD4-209ENST00000564068 MUC16Q8WXI7 14507 aa1.17□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 200 ms