RNA–Protein interactions for RNA: ENST00000561623.5

GTF3C1-202, Transcript of general transcription factor IIIC subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3C1, Length 7,015 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-202ENST00000561623 KRTAP2-3P0C7H8 128 aa3.21□□□□□ -1.89
GTF3C1-202ENST00000561623 KRTAP19-3Q7Z4W3 81 aa3.21□□□□□ -1.89
GTF3C1-202ENST00000561623 KRTAP2-4Q9BYR9 128 aa3.21□□□□□ -1.89
GTF3C1-202ENST00000561623 KRTAP19-2Q3LHN2 52 aa3.18□□□□□ -1.9
GTF3C1-202ENST00000561623 KRTAP4-9Q9BYQ8 210 aa3.17□□□□□ -1.9
GTF3C1-202ENST00000561623 KRTAP4-3Q9BYR4 195 aa3.15□□□□□ -1.9
GTF3C1-202ENST00000561623 FLGP20930 4061 aaPredicted RBP3.15□□□□□ -1.9
GTF3C1-202ENST00000561623 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.13□□□□□ -1.91
GTF3C1-202ENST00000561623 LCE1CQ5T751 118 aa3.13□□□□□ -1.91
GTF3C1-202ENST00000561623 LCE1EQ5T753 118 aa3.13□□□□□ -1.91
GTF3C1-202ENST00000561623 LCE1FQ5T754 118 aa3.13□□□□□ -1.91
GTF3C1-202ENST00000561623 LCE1AQ5T7P2 110 aa3.13□□□□□ -1.91
GTF3C1-202ENST00000561623 MUC17Q685J3 4493 aa3.13□□□□□ -1.91
GTF3C1-202ENST00000561623 LCE4AQ5TA78 99 aa3.13□□□□□ -1.91
GTF3C1-202ENST00000561623 BIRC6Q9NR09 4857 aa3.11□□□□□ -1.91
GTF3C1-202ENST00000561623 MT1MQ8N339 61 aa3.11□□□□□ -1.91
GTF3C1-202ENST00000561623 PCLOQ9Y6V0 5065 aa3.11□□□□□ -1.91
GTF3C1-202ENST00000561623 SYNE2Q8WXH0 6885 aaKnown RBP3.1□□□□□ -1.91
GTF3C1-202ENST00000561623 MT3P25713 68 aa3.1□□□□□ -1.91
GTF3C1-202ENST00000561623 KRTAP2-2Q9BYT5 123 aa3.06□□□□□ -1.92
GTF3C1-202ENST00000561623 KRTAP2-1Q9BYU5 128 aa3.06□□□□□ -1.92
GTF3C1-202ENST00000561623 KRTAP6-3Q3LI67 103 aa3.04□□□□□ -1.92
GTF3C1-202ENST00000561623 FSIP2Q5CZC0 6907 aa3.04□□□□□ -1.92
GTF3C1-202ENST00000561623 EPPK1P58107 5090 aaKnown RBP3□□□□□ -1.93
GTF3C1-202ENST00000561623 KRTAP19-7Q3SYF9 63 aa2.98□□□□□ -1.93
GTF3C1-202ENST00000561623 ABCA13Q86UQ4 5058 aa2.91□□□□□ -1.94
GTF3C1-202ENST00000561623 HMCN2Q8NDA2 5059 aa2.91□□□□□ -1.94
GTF3C1-202ENST00000561623 KRTAP9-6A8MVA2 160 aa2.91□□□□□ -1.94
GTF3C1-202ENST00000561623 KRTAP9-9Q9BYP9 154 aa2.89□□□□□ -1.95
GTF3C1-202ENST00000561623 LCE2AQ5TA79 106 aaPredicted RBP2.88□□□□□ -1.95
GTF3C1-202ENST00000561623 MT1AP04731 61 aa2.88□□□□□ -1.95
GTF3C1-202ENST00000561623 UBR4Q5T4S7 5183 aa2.87□□□□□ -1.95
GTF3C1-202ENST00000561623 SYNE1Q8NF91 8797 aaKnown RBP2.87□□□□□ -1.95
GTF3C1-202ENST00000561623 FAT4Q6V0I7 4981 aa2.83□□□□□ -1.96
GTF3C1-202ENST00000561623 KRTAP6-2Q3LI66 62 aa2.82□□□□□ -1.96
GTF3C1-202ENST00000561623 RNF213Q63HN8 5207 aa2.8□□□□□ -1.96
GTF3C1-202ENST00000561623 KRTAP6-1Q3LI64 71 aa2.79□□□□□ -1.96
GTF3C1-202ENST00000561623 MUC2Q02817 5179 aa2.73□□□□□ -1.97
GTF3C1-202ENST00000561623 OBSCNQ5VST9 7968 aa2.68□□□□□ -1.98
GTF3C1-202ENST00000561623 MACF1Q9UPN3 7388 aaKnown RBP2.67□□□□□ -1.98
GTF3C1-202ENST00000561623 KRTAP9-4Q9BYQ2 154 aa2.66□□□□□ -1.98
GTF3C1-202ENST00000561623 FCGBPQ9Y6R7 5405 aaPredicted RBP2.55□□□□□ -2
GTF3C1-202ENST00000561623 GPR98Q8WXG9 6306 aa2.53□□□□□ -2
GTF3C1-202ENST00000561623 KRTAP20-2Q3LI61 65 aa2.53□□□□□ -2
GTF3C1-202ENST00000561623 KMT2DO14686 5537 aa2.52□□□□□ -2.01
GTF3C1-202ENST00000561623 NEBP20929 6669 aa2.51□□□□□ -2.01
GTF3C1-202ENST00000561623 USH2AO75445 5202 aa2.48□□□□□ -2.01
GTF3C1-202ENST00000561623 DSTQ03001 7570 aaKnown RBP2.46□□□□□ -2.02
GTF3C1-202ENST00000561623 KRTAP4-6Q9BYQ5 205 aa2.43□□□□□ -2.02
GTF3C1-202ENST00000561623 KRTAP4-12Q9BQ66 201 aa2.4□□□□□ -2.03
GTF3C1-202ENST00000561623 KRTAP4-2Q9BYR5 136 aa2.4□□□□□ -2.03
GTF3C1-202ENST00000561623 KRTAP4-11Q9BYQ6 195 aa2.4□□□□□ -2.03
GTF3C1-202ENST00000561623 KRTAP4-4Q9BYR3 166 aa2.35□□□□□ -2.03
GTF3C1-202ENST00000561623 SSPOA2VEC9 5147 aa2.32□□□□□ -2.04
GTF3C1-202ENST00000561623 KRTAP5-5Q701N2 237 aaPredicted RBP2.21□□□□□ -2.05
GTF3C1-202ENST00000561623 KRTAP5-9P26371 169 aa2.21□□□□□ -2.06
GTF3C1-202ENST00000561623 MUC12Q9UKN1 5478 aa2.2□□□□□ -2.06
GTF3C1-202ENST00000561623 MUC19Q7Z5P9 8384 aa2.13□□□□□ -2.07
GTF3C1-202ENST00000561623 KRTAP5-4Q6L8H1 288 aa2.05□□□□□ -2.08
GTF3C1-202ENST00000561623 PHGR1C9JFL3 82 aa2.04□□□□□ -2.08
GTF3C1-202ENST00000561623 MDN1Q9NU22 5596 aa2.04□□□□□ -2.08
GTF3C1-202ENST00000561623 KRTAP5-3Q6L8H2 238 aa2.04□□□□□ -2.08
GTF3C1-202ENST00000561623 KRTAP5-8O75690 187 aa1.82□□□□□ -2.12
GTF3C1-202ENST00000561623 MUC5ACP98088 5654 aa1.77□□□□□ -2.13
GTF3C1-202ENST00000561623 KRTAP5-10Q6L8G5 202 aa1.68□□□□□ -2.14
GTF3C1-202ENST00000561623 AHNAK2Q8IVF2 5795 aa1.65□□□□□ -2.15
GTF3C1-202ENST00000561623 HMCN1Q96RW7 5635 aa1.64□□□□□ -2.15
GTF3C1-202ENST00000561623 KRTAP5-2Q701N4 177 aa1.59□□□□□ -2.15
GTF3C1-202ENST00000561623 KRTAP5-7Q6L8G8 165 aa1.48□□□□□ -2.17
GTF3C1-202ENST00000561623 KRTAP5-1Q6L8H4 278 aa1.47□□□□□ -2.17
GTF3C1-202ENST00000561623 AHNAKQ09666 5890 aaKnown RBP1.45□□□□□ -2.18
GTF3C1-202ENST00000561623 MUC5BQ9HC84 5762 aaPredicted RBP1.42□□□□□ -2.18
GTF3C1-202ENST00000561623 KRTAP21-2Q3LI59 83 aa1.39□□□□□ -2.19
GTF3C1-202ENST00000561623 KRTAP21-1Q3LI58 79 aa1.38□□□□□ -2.19
GTF3C1-202ENST00000561623 KRTAP5-11Q6L8G4 156 aa1.34□□□□□ -2.19
GTF3C1-202ENST00000561623 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.22□□□□□ -2.21
GTF3C1-202ENST00000561623 MUC16Q8WXI7 14507 aa1.02□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 102 ms