RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	LRP2	P98164	4655 aa		1.11	□□□□□ -2.23
SPG11-223	ENST00000560858	HERC1	Q15751	4861 aa		1.1	□□□□□ -2.23
SPG11-223	ENST00000560858	FLG	P20930	4061 aa	Predicted RBP	1.1	□□□□□ -2.23
SPG11-223	ENST00000560858	ABCA13	Q86UQ4	5058 aa		1.09	□□□□□ -2.24
SPG11-223	ENST00000560858	LPA	P08519	4548 aa		1.08	□□□□□ -2.24
SPG11-223	ENST00000560858	EPPK1	P58107	5090 aa	Known RBP	1.08	□□□□□ -2.24
SPG11-223	ENST00000560858	BIRC6	Q9NR09	4857 aa		1.07	□□□□□ -2.24
SPG11-223	ENST00000560858	SPRR5	A0A1B0GTR4	108 aa		1.06	□□□□□ -2.24
SPG11-223	ENST00000560858	PLAC4	Q8WY50	150 aa		1.06	□□□□□ -2.24
SPG11-223	ENST00000560858	HERC2	O95714	4834 aa		1.05	□□□□□ -2.24
SPG11-223	ENST00000560858	CAMK2N1	Q7Z7J9	78 aa		1.05	□□□□□ -2.24
SPG11-223	ENST00000560858	TNP1	P09430	55 aa		1.04	□□□□□ -2.24
SPG11-223	ENST00000560858	SPRR2G	Q9BYE4	73 aa		1.03	□□□□□ -2.24
SPG11-223	ENST00000560858	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	1.03	□□□□□ -2.24
SPG11-223	ENST00000560858	HMCN1	Q96RW7	5635 aa		1.03	□□□□□ -2.24
SPG11-223	ENST00000560858	LUZP6	Q538Z0	58 aa		1.01	□□□□□ -2.25
SPG11-223	ENST00000560858	HMCN2	Q8NDA2	5059 aa		1	□□□□□ -2.25
SPG11-223	ENST00000560858	PCLO	Q9Y6V0	5065 aa		0.99	□□□□□ -2.25
SPG11-223	ENST00000560858	KRTAP19-8	Q3LI54	63 aa		0.99	□□□□□ -2.25
SPG11-223	ENST00000560858	MT2A	P02795	61 aa		0.98	□□□□□ -2.25
SPG11-223	ENST00000560858	MT1F	P04733	61 aa		0.98	□□□□□ -2.25
SPG11-223	ENST00000560858	KRTAP12-4	P60329	112 aa		0.98	□□□□□ -2.25
SPG11-223	ENST00000560858	MT1H	P80294	61 aa		0.98	□□□□□ -2.25
SPG11-223	ENST00000560858	KRTAP8-1	Q8IUC2	63 aa		0.98	□□□□□ -2.25
SPG11-223	ENST00000560858	RNF213	Q63HN8	5207 aa		0.98	□□□□□ -2.25
SPG11-223	ENST00000560858	MT1B	P07438	61 aa		0.97	□□□□□ -2.25
SPG11-223	ENST00000560858	MT1X	P80297	61 aa		0.96	□□□□□ -2.26
SPG11-223	ENST00000560858	UBR4	Q5T4S7	5183 aa		0.94	□□□□□ -2.26
SPG11-223	ENST00000560858		M0R2T5	61 aa		0.94	□□□□□ -2.26
SPG11-223	ENST00000560858	KRTAP12-3	P60328	96 aa		0.93	□□□□□ -2.26
SPG11-223	ENST00000560858	FAT4	Q6V0I7	4981 aa		0.93	□□□□□ -2.26
SPG11-223	ENST00000560858	MUC2	Q02817	5179 aa		0.92	□□□□□ -2.26
SPG11-223	ENST00000560858	INE1	O15225	51 aa		0.92	□□□□□ -2.26
SPG11-223	ENST00000560858	PRO2289	Q9P1D8	64 aa		0.92	□□□□□ -2.26
SPG11-223	ENST00000560858	KRTAP19-5	Q3LI72	72 aa		0.88	□□□□□ -2.27
SPG11-223	ENST00000560858	KRTAP2-3	P0C7H8	128 aa		0.86	□□□□□ -2.27
SPG11-223	ENST00000560858	KRTAP19-7	Q3SYF9	63 aa		0.86	□□□□□ -2.27
SPG11-223	ENST00000560858	KRTAP2-4	Q9BYR9	128 aa		0.86	□□□□□ -2.27
SPG11-223	ENST00000560858	KRTAP2-1	Q9BYU5	128 aa		0.86	□□□□□ -2.27
SPG11-223	ENST00000560858	MT1L	Q93083	61 aa		0.84	□□□□□ -2.27
SPG11-223	ENST00000560858	MT1E	P04732	61 aa		0.83	□□□□□ -2.28
SPG11-223	ENST00000560858	USH2A	O75445	5202 aa		0.83	□□□□□ -2.28
SPG11-223	ENST00000560858	SSPO	A2VEC9	5147 aa		0.83	□□□□□ -2.28
SPG11-223	ENST00000560858	KRTAP19-6	Q3LI70	58 aa		0.81	□□□□□ -2.28
SPG11-223	ENST00000560858	KMT2D	O14686	5537 aa		0.79	□□□□□ -2.28
SPG11-223	ENST00000560858	MT1M	Q8N339	61 aa		0.78	□□□□□ -2.28
SPG11-223	ENST00000560858	KRTAP19-3	Q7Z4W3	81 aa		0.77	□□□□□ -2.29
SPG11-223	ENST00000560858	MT1G	P13640	62 aa		0.76	□□□□□ -2.29
SPG11-223	ENST00000560858	MT1A	P04731	61 aa		0.72	□□□□□ -2.29
SPG11-223	ENST00000560858	MUC12	Q9UKN1	5478 aa		0.71	□□□□□ -2.3
SPG11-223	ENST00000560858	KRTAP6-1	Q3LI64	71 aa		0.7	□□□□□ -2.3
SPG11-223	ENST00000560858	SPRR2F	Q96RM1	72 aa		0.7	□□□□□ -2.3
SPG11-223	ENST00000560858	SYNE1	Q8NF91	8797 aa	Known RBP	0.66	□□□□□ -2.3
SPG11-223	ENST00000560858	MACF1	Q9UPN3	7388 aa	Known RBP	0.64	□□□□□ -2.31
SPG11-223	ENST00000560858	PRM1	P04553	51 aa		0.64	□□□□□ -2.31
SPG11-223	ENST00000560858	SPRR2E	P22531	72 aa		0.64	□□□□□ -2.31
SPG11-223	ENST00000560858	SPRR2B	P35325	72 aa		0.64	□□□□□ -2.31
SPG11-223	ENST00000560858	SPRR2A	P35326	72 aa		0.64	□□□□□ -2.31
SPG11-223	ENST00000560858	KRTAP5-10	Q6L8G5	202 aa		0.64	□□□□□ -2.31
SPG11-223	ENST00000560858	DST	Q03001	7570 aa	Known RBP	0.63	□□□□□ -2.31
SPG11-223	ENST00000560858	KRTAP6-2	Q3LI66	62 aa		0.63	□□□□□ -2.31
SPG11-223	ENST00000560858	KRTAP6-3	Q3LI67	103 aa		0.63	□□□□□ -2.31
SPG11-223	ENST00000560858	MDN1	Q9NU22	5596 aa		0.63	□□□□□ -2.31
SPG11-223	ENST00000560858	FSIP2	Q5CZC0	6907 aa		0.62	□□□□□ -2.31
SPG11-223	ENST00000560858	SPRR2D	P22532	72 aa		0.61	□□□□□ -2.31
SPG11-223	ENST00000560858	AHNAK2	Q8IVF2	5795 aa		0.59	□□□□□ -2.32
SPG11-223	ENST00000560858	SYNE2	Q8WXH0	6885 aa	Known RBP	0.59	□□□□□ -2.32
SPG11-223	ENST00000560858	MUC16	Q8WXI7	14507 aa		0.57	□□□□□ -2.32
SPG11-223	ENST00000560858	NEB	P20929	6669 aa		0.55	□□□□□ -2.32
SPG11-223	ENST00000560858	KRTAP20-2	Q3LI61	65 aa		0.55	□□□□□ -2.32
SPG11-223	ENST00000560858	MUC5AC	P98088	5654 aa		0.54	□□□□□ -2.32
SPG11-223	ENST00000560858	KRTAP20-1	Q3LI63	56 aa		0.52	□□□□□ -2.33
SPG11-223	ENST00000560858	MT4	P47944	62 aa		0.5	□□□□□ -2.33
SPG11-223	ENST00000560858	MUC5B	Q9HC84	5762 aa	Predicted RBP	0.43	□□□□□ -2.34
SPG11-223	ENST00000560858	KRTAP21-1	Q3LI58	79 aa		0.43	□□□□□ -2.34
SPG11-223	ENST00000560858	PHGR1	C9JFL3	82 aa		0.36	□□□□□ -2.35
SPG11-223	ENST00000560858	AHNAK	Q09666	5890 aa	Known RBP	0.35	□□□□□ -2.35
SPG11-223	ENST00000560858	GPR98	Q8WXG9	6306 aa		0.34	□□□□□ -2.35

Retrieved 78 of 20,778 RNA–protein pairs in 243 ms