RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 KRTAP2-4Q9BYR9 128 aa4.35□□□□□ -1.71
LDLR-207ENST00000558013 KRTAP2-1Q9BYU5 128 aa4.35□□□□□ -1.71
LDLR-207ENST00000558013 LOC100996750A0A140TA64 210 aa4.34□□□□□ -1.71
LDLR-207ENST00000558013 KRTAP19-6Q3LI70 58 aa4.32□□□□□ -1.72
LDLR-207ENST00000558013 LCE2DQ5TA82 110 aaPredicted RBP4.28□□□□□ -1.72
LDLR-207ENST00000558013 MT1GP13640 62 aa4.24□□□□□ -1.73
LDLR-207ENST00000558013 CRCT1Q9UGL9 99 aa4.22□□□□□ -1.73
LDLR-207ENST00000558013 KRTAP19-4Q3LI73 84 aa4.17□□□□□ -1.74
LDLR-207ENST00000558013 MT1MQ8N339 61 aa4.16□□□□□ -1.74
LDLR-207ENST00000558013 KRTAP19-3Q7Z4W3 81 aa4.14□□□□□ -1.75
LDLR-207ENST00000558013 MACF1Q9UPN3 7388 aaKnown RBP4.14□□□□□ -1.75
LDLR-207ENST00000558013 SYNE2Q8WXH0 6885 aaKnown RBP4.07□□□□□ -1.76
LDLR-207ENST00000558013 SPRR2FQ96RM1 72 aa4.06□□□□□ -1.76
LDLR-207ENST00000558013 MDN1Q9NU22 5596 aa4.06□□□□□ -1.76
LDLR-207ENST00000558013 SYNE1Q8NF91 8797 aaKnown RBP4.05□□□□□ -1.76
LDLR-207ENST00000558013 LCE5AQ5TCM9 118 aa4.01□□□□□ -1.77
LDLR-207ENST00000558013 LCE3BQ5TA77 95 aa3.93□□□□□ -1.78
LDLR-207ENST00000558013 KRTAP4-9Q9BYQ8 210 aa3.93□□□□□ -1.78
LDLR-207ENST00000558013 KRTAP12-4P60329 112 aa3.92□□□□□ -1.78
LDLR-207ENST00000558013 KRTAP6-1Q3LI64 71 aa3.84□□□□□ -1.8
LDLR-207ENST00000558013 OBSCNQ5VST9 7968 aa3.83□□□□□ -1.8
LDLR-207ENST00000558013 LCE1AQ5T7P2 110 aa3.76□□□□□ -1.81
LDLR-207ENST00000558013 KRTAP9-2Q9BYQ4 174 aa3.72□□□□□ -1.81
LDLR-207ENST00000558013 MT1AP04731 61 aa3.68□□□□□ -1.82
LDLR-207ENST00000558013 SPRR2EP22531 72 aa3.66□□□□□ -1.82
LDLR-207ENST00000558013 KRTAP5-9P26371 169 aa3.66□□□□□ -1.82
LDLR-207ENST00000558013 SPRR2BP35325 72 aa3.66□□□□□ -1.82
LDLR-207ENST00000558013 SPRR2AP35326 72 aa3.66□□□□□ -1.82
LDLR-207ENST00000558013 KRTAP5-5Q701N2 237 aaPredicted RBP3.65□□□□□ -1.82
LDLR-207ENST00000558013 LCE3DQ9BYE3 92 aa3.63□□□□□ -1.83
LDLR-207ENST00000558013 KRTAP9-7A8MTY7 169 aa3.58□□□□□ -1.84
LDLR-207ENST00000558013 LCE3EQ5T5B0 92 aa3.55□□□□□ -1.84
LDLR-207ENST00000558013 KRTAP9-4Q9BYQ2 154 aa3.49□□□□□ -1.85
LDLR-207ENST00000558013 SPRR2DP22532 72 aa3.48□□□□□ -1.85
LDLR-207ENST00000558013 PRM1P04553 51 aa3.47□□□□□ -1.85
LDLR-207ENST00000558013 KRTAP6-2Q3LI66 62 aa3.44□□□□□ -1.86
LDLR-207ENST00000558013 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.35□□□□□ -1.87
LDLR-207ENST00000558013 KRTAP9-6A0A140TA67 174 aa3.31□□□□□ -1.88
LDLR-207ENST00000558013 MT3P25713 68 aa3.3□□□□□ -1.88
LDLR-207ENST00000558013 KRTAP6-3Q3LI67 103 aa3.3□□□□□ -1.88
LDLR-207ENST00000558013 KRTAP4-6Q9BYQ5 205 aa3.21□□□□□ -1.9
LDLR-207ENST00000558013 NEBP20929 6669 aa3.18□□□□□ -1.9
LDLR-207ENST00000558013 MT4P47944 62 aa3.17□□□□□ -1.9
LDLR-207ENST00000558013 KRTAP5-4Q6L8H1 288 aa3.17□□□□□ -1.9
LDLR-207ENST00000558013 HMCN1Q96RW7 5635 aa3.09□□□□□ -1.91
LDLR-207ENST00000558013 KRTAP20-2Q3LI61 65 aa3.03□□□□□ -1.92
LDLR-207ENST00000558013 KRTAP2-2Q9BYT5 123 aa3.01□□□□□ -1.93
LDLR-207ENST00000558013 KRTAP5-2Q701N4 177 aa2.96□□□□□ -1.94
LDLR-207ENST00000558013 LCE1EQ5T753 118 aa2.95□□□□□ -1.94
LDLR-207ENST00000558013 MUC5ACP98088 5654 aa2.94□□□□□ -1.94
LDLR-207ENST00000558013 LCE1DQ5T752 114 aa2.93□□□□□ -1.94
LDLR-207ENST00000558013 LCE4AQ5TA78 99 aa2.9□□□□□ -1.95
LDLR-207ENST00000558013 KRTAP5-3Q6L8H2 238 aa2.86□□□□□ -1.95
LDLR-207ENST00000558013 LCE1BQ5T7P3 118 aa2.79□□□□□ -1.96
LDLR-207ENST00000558013 KRTAP20-1Q3LI63 56 aa2.78□□□□□ -1.96
LDLR-207ENST00000558013 KRTAP4-11Q9BYQ6 195 aa2.66□□□□□ -1.98
LDLR-207ENST00000558013 KRTAP5-10Q6L8G5 202 aa2.65□□□□□ -1.98
LDLR-207ENST00000558013 KRTAP4-2Q9BYR5 136 aa2.61□□□□□ -1.99
LDLR-207ENST00000558013 KRTAP5-1Q6L8H4 278 aa2.58□□□□□ -2
LDLR-207ENST00000558013 MUC19Q7Z5P9 8384 aa2.57□□□□□ -2
LDLR-207ENST00000558013 LCE1CQ5T751 118 aa2.53□□□□□ -2
LDLR-207ENST00000558013 KRTAP21-2Q3LI59 83 aa2.45□□□□□ -2.02
LDLR-207ENST00000558013 AHNAK2Q8IVF2 5795 aa2.42□□□□□ -2.02
LDLR-207ENST00000558013 GPR98Q8WXG9 6306 aa2.4□□□□□ -2.03
LDLR-207ENST00000558013 KRTAP5-8O75690 187 aa2.39□□□□□ -2.03
LDLR-207ENST00000558013 MUC5BQ9HC84 5762 aaPredicted RBP2.38□□□□□ -2.03
LDLR-207ENST00000558013 KRTAP4-4Q9BYR3 166 aa2.37□□□□□ -2.03
LDLR-207ENST00000558013 LCE1FQ5T754 118 aa2.35□□□□□ -2.03
LDLR-207ENST00000558013 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.35□□□□□ -2.03
LDLR-207ENST00000558013 KRTAP5-7Q6L8G8 165 aa2.26□□□□□ -2.05
LDLR-207ENST00000558013 KRTAP9-9Q9BYP9 154 aa2.24□□□□□ -2.05
LDLR-207ENST00000558013 KRTAP4-12Q9BQ66 201 aa2.24□□□□□ -2.05
LDLR-207ENST00000558013 KRTAP5-11Q6L8G4 156 aa2.16□□□□□ -2.06
LDLR-207ENST00000558013 KRTAP21-1Q3LI58 79 aa2.11□□□□□ -2.07
LDLR-207ENST00000558013 PHGR1C9JFL3 82 aa1.9□□□□□ -2.11
LDLR-207ENST00000558013 AHNAKQ09666 5890 aaKnown RBP1.83□□□□□ -2.12
LDLR-207ENST00000558013 MUC16Q8WXI7 14507 aa1.24□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 42.5 ms