RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 KRTAP9-7A8MTY7 169 aa1.71□□□□□ -2.14
SYNE2-223ENST00000557005 KRTAP9-3Q9BYQ3 159 aa1.71□□□□□ -2.14
SYNE2-223ENST00000557005 ABCA13Q86UQ4 5058 aa1.71□□□□□ -2.14
SYNE2-223ENST00000557005 MACF1Q9UPN3 7388 aaKnown RBP1.68□□□□□ -2.14
SYNE2-223ENST00000557005 KRTAP12-4P60329 112 aa1.68□□□□□ -2.14
SYNE2-223ENST00000557005 SPRR2FQ96RM1 72 aa1.68□□□□□ -2.14
SYNE2-223ENST00000557005 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.65□□□□□ -2.15
SYNE2-223ENST00000557005 KIAA1109Q2LD37 5005 aa1.64□□□□□ -2.15
SYNE2-223ENST00000557005 LCE1DQ5T752 114 aa1.64□□□□□ -2.15
SYNE2-223ENST00000557005 MT1LQ93083 61 aa1.63□□□□□ -2.15
SYNE2-223ENST00000557005 KRTAP4-3Q9BYR4 195 aa1.62□□□□□ -2.15
SYNE2-223ENST00000557005 MT1EP04732 61 aa1.61□□□□□ -2.15
SYNE2-223ENST00000557005 HMCN2Q8NDA2 5059 aa1.59□□□□□ -2.15
SYNE2-223ENST00000557005 SPRR2EP22531 72 aa1.58□□□□□ -2.16
SYNE2-223ENST00000557005 SPRR2BP35325 72 aa1.58□□□□□ -2.16
SYNE2-223ENST00000557005 SPRR2AP35326 72 aa1.58□□□□□ -2.16
SYNE2-223ENST00000557005 KRTAP2-3P0C7H8 128 aa1.57□□□□□ -2.16
SYNE2-223ENST00000557005 KRTAP2-4Q9BYR9 128 aa1.57□□□□□ -2.16
SYNE2-223ENST00000557005 KRTAP2-1Q9BYU5 128 aa1.57□□□□□ -2.16
SYNE2-223ENST00000557005 PRM1P04553 51 aa1.56□□□□□ -2.16
SYNE2-223ENST00000557005 KRTAP9-6A8MVA2 160 aa1.56□□□□□ -2.16
SYNE2-223ENST00000557005 LCE3DQ9BYE3 92 aa1.56□□□□□ -2.16
SYNE2-223ENST00000557005 KRTAP19-3Q7Z4W3 81 aa1.54□□□□□ -2.16
SYNE2-223ENST00000557005 MT1MQ8N339 61 aa1.53□□□□□ -2.16
SYNE2-223ENST00000557005 DSTQ03001 7570 aaKnown RBP1.53□□□□□ -2.16
SYNE2-223ENST00000557005 KRTAP19-7Q3SYF9 63 aa1.53□□□□□ -2.17
SYNE2-223ENST00000557005 LCE3EQ5T5B0 92 aa1.53□□□□□ -2.17
SYNE2-223ENST00000557005 FAT4Q6V0I7 4981 aa1.52□□□□□ -2.17
SYNE2-223ENST00000557005 MUC2Q02817 5179 aa1.52□□□□□ -2.17
SYNE2-223ENST00000557005 KRTAP5-2Q701N4 177 aa1.51□□□□□ -2.17
SYNE2-223ENST00000557005 SPRR2DP22532 72 aa1.51□□□□□ -2.17
SYNE2-223ENST00000557005 UBR4Q5T4S7 5183 aa1.51□□□□□ -2.17
SYNE2-223ENST00000557005 RNF213Q63HN8 5207 aa1.49□□□□□ -2.17
SYNE2-223ENST00000557005 LCE5AQ5TCM9 118 aa1.48□□□□□ -2.17
SYNE2-223ENST00000557005 KRTAP5-11Q6L8G4 156 aa1.46□□□□□ -2.18
SYNE2-223ENST00000557005 KRTAP19-6Q3LI70 58 aa1.44□□□□□ -2.18
SYNE2-223ENST00000557005 KMT2DO14686 5537 aa1.43□□□□□ -2.18
SYNE2-223ENST00000557005 KRTAP6-1Q3LI64 71 aa1.42□□□□□ -2.18
SYNE2-223ENST00000557005 SYNE1Q8NF91 8797 aaKnown RBP1.42□□□□□ -2.18
SYNE2-223ENST00000557005 OBSCNQ5VST9 7968 aa1.41□□□□□ -2.18
SYNE2-223ENST00000557005 MT1AP04731 61 aa1.41□□□□□ -2.18
SYNE2-223ENST00000557005 KRTAP6-2Q3LI66 62 aa1.4□□□□□ -2.18
SYNE2-223ENST00000557005 MUC19Q7Z5P9 8384 aa1.4□□□□□ -2.19
SYNE2-223ENST00000557005 MT4P47944 62 aa1.37□□□□□ -2.19
SYNE2-223ENST00000557005 SYNE2Q8WXH0 6885 aaKnown RBP1.36□□□□□ -2.19
SYNE2-223ENST00000557005 LCE1FQ5T754 118 aa1.34□□□□□ -2.19
SYNE2-223ENST00000557005 KRTAP5-4Q6L8H1 288 aa1.33□□□□□ -2.2
SYNE2-223ENST00000557005 KRTAP4-4Q9BYR3 166 aa1.33□□□□□ -2.2
SYNE2-223ENST00000557005 KRTAP20-1Q3LI63 56 aa1.33□□□□□ -2.2
SYNE2-223ENST00000557005 KRTAP5-1Q6L8H4 278 aa1.31□□□□□ -2.2
SYNE2-223ENST00000557005 LCE1BQ5T7P3 118 aa1.29□□□□□ -2.2
SYNE2-223ENST00000557005 KRTAP6-3Q3LI67 103 aa1.28□□□□□ -2.21
SYNE2-223ENST00000557005 MDN1Q9NU22 5596 aa1.25□□□□□ -2.21
SYNE2-223ENST00000557005 KRTAP5-5Q701N2 237 aaPredicted RBP1.25□□□□□ -2.21
SYNE2-223ENST00000557005 SSPOA2VEC9 5147 aa1.24□□□□□ -2.21
SYNE2-223ENST00000557005 USH2AO75445 5202 aa1.24□□□□□ -2.21
SYNE2-223ENST00000557005 KRTAP5-9P26371 169 aa1.24□□□□□ -2.21
SYNE2-223ENST00000557005 LCE1AQ5T7P2 110 aa1.24□□□□□ -2.21
SYNE2-223ENST00000557005 HMCN1Q96RW7 5635 aa1.24□□□□□ -2.21
SYNE2-223ENST00000557005 AHNAKQ09666 5890 aaKnown RBP1.23□□□□□ -2.21
SYNE2-223ENST00000557005 KRTAP2-2Q9BYT5 123 aa1.23□□□□□ -2.21
SYNE2-223ENST00000557005 FSIP2Q5CZC0 6907 aa1.22□□□□□ -2.21
SYNE2-223ENST00000557005 AHNAK2Q8IVF2 5795 aa1.17□□□□□ -2.22
SYNE2-223ENST00000557005 LCE1EQ5T753 118 aa1.16□□□□□ -2.22
SYNE2-223ENST00000557005 NEBP20929 6669 aa1.11□□□□□ -2.23
SYNE2-223ENST00000557005 FCGBPQ9Y6R7 5405 aaPredicted RBP1.1□□□□□ -2.23
SYNE2-223ENST00000557005 MUC5BQ9HC84 5762 aaPredicted RBP1.05□□□□□ -2.24
SYNE2-223ENST00000557005 MUC12Q9UKN1 5478 aa1.05□□□□□ -2.24
SYNE2-223ENST00000557005 KRTAP20-2Q3LI61 65 aa1.04□□□□□ -2.24
SYNE2-223ENST00000557005 LCE1CQ5T751 118 aa1.02□□□□□ -2.25
SYNE2-223ENST00000557005 MUC5ACP98088 5654 aa0.92□□□□□ -2.26
SYNE2-223ENST00000557005 KRTAP5-10Q6L8G5 202 aa0.9□□□□□ -2.27
SYNE2-223ENST00000557005 KRTAP5-8O75690 187 aa0.88□□□□□ -2.27
SYNE2-223ENST00000557005 KRTAP21-1Q3LI58 79 aa0.77□□□□□ -2.29
SYNE2-223ENST00000557005 KRTAP21-2Q3LI59 83 aa0.77□□□□□ -2.29
SYNE2-223ENST00000557005 KRTAP5-7Q6L8G8 165 aa0.75□□□□□ -2.29
SYNE2-223ENST00000557005 MUC16Q8WXI7 14507 aa0.66□□□□□ -2.3
SYNE2-223ENST00000557005 PHGR1C9JFL3 82 aa0.66□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 120.8 ms