RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	KRTAP9-7	A8MTY7	169 aa		1.71	□□□□□ -2.14
SYNE2-223	ENST00000557005	KRTAP9-3	Q9BYQ3	159 aa		1.71	□□□□□ -2.14
SYNE2-223	ENST00000557005	ABCA13	Q86UQ4	5058 aa		1.71	□□□□□ -2.14
SYNE2-223	ENST00000557005	MACF1	Q9UPN3	7388 aa	Known RBP	1.68	□□□□□ -2.14
SYNE2-223	ENST00000557005	KRTAP12-4	P60329	112 aa		1.68	□□□□□ -2.14
SYNE2-223	ENST00000557005	SPRR2F	Q96RM1	72 aa		1.68	□□□□□ -2.14
SYNE2-223	ENST00000557005	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	1.65	□□□□□ -2.15
SYNE2-223	ENST00000557005	KIAA1109	Q2LD37	5005 aa		1.64	□□□□□ -2.15
SYNE2-223	ENST00000557005	LCE1D	Q5T752	114 aa		1.64	□□□□□ -2.15
SYNE2-223	ENST00000557005	MT1L	Q93083	61 aa		1.63	□□□□□ -2.15
SYNE2-223	ENST00000557005	KRTAP4-3	Q9BYR4	195 aa		1.62	□□□□□ -2.15
SYNE2-223	ENST00000557005	MT1E	P04732	61 aa		1.61	□□□□□ -2.15
SYNE2-223	ENST00000557005	HMCN2	Q8NDA2	5059 aa		1.59	□□□□□ -2.15
SYNE2-223	ENST00000557005	SPRR2E	P22531	72 aa		1.58	□□□□□ -2.16
SYNE2-223	ENST00000557005	SPRR2B	P35325	72 aa		1.58	□□□□□ -2.16
SYNE2-223	ENST00000557005	SPRR2A	P35326	72 aa		1.58	□□□□□ -2.16
SYNE2-223	ENST00000557005	KRTAP2-3	P0C7H8	128 aa		1.57	□□□□□ -2.16
SYNE2-223	ENST00000557005	KRTAP2-4	Q9BYR9	128 aa		1.57	□□□□□ -2.16
SYNE2-223	ENST00000557005	KRTAP2-1	Q9BYU5	128 aa		1.57	□□□□□ -2.16
SYNE2-223	ENST00000557005	PRM1	P04553	51 aa		1.56	□□□□□ -2.16
SYNE2-223	ENST00000557005	KRTAP9-6	A8MVA2	160 aa		1.56	□□□□□ -2.16
SYNE2-223	ENST00000557005	LCE3D	Q9BYE3	92 aa		1.56	□□□□□ -2.16
SYNE2-223	ENST00000557005	KRTAP19-3	Q7Z4W3	81 aa		1.54	□□□□□ -2.16
SYNE2-223	ENST00000557005	MT1M	Q8N339	61 aa		1.53	□□□□□ -2.16
SYNE2-223	ENST00000557005	DST	Q03001	7570 aa	Known RBP	1.53	□□□□□ -2.16
SYNE2-223	ENST00000557005	KRTAP19-7	Q3SYF9	63 aa		1.53	□□□□□ -2.17
SYNE2-223	ENST00000557005	LCE3E	Q5T5B0	92 aa		1.53	□□□□□ -2.17
SYNE2-223	ENST00000557005	FAT4	Q6V0I7	4981 aa		1.52	□□□□□ -2.17
SYNE2-223	ENST00000557005	MUC2	Q02817	5179 aa		1.52	□□□□□ -2.17
SYNE2-223	ENST00000557005	KRTAP5-2	Q701N4	177 aa		1.51	□□□□□ -2.17
SYNE2-223	ENST00000557005	SPRR2D	P22532	72 aa		1.51	□□□□□ -2.17
SYNE2-223	ENST00000557005	UBR4	Q5T4S7	5183 aa		1.51	□□□□□ -2.17
SYNE2-223	ENST00000557005	RNF213	Q63HN8	5207 aa		1.49	□□□□□ -2.17
SYNE2-223	ENST00000557005	LCE5A	Q5TCM9	118 aa		1.48	□□□□□ -2.17
SYNE2-223	ENST00000557005	KRTAP5-11	Q6L8G4	156 aa		1.46	□□□□□ -2.18
SYNE2-223	ENST00000557005	KRTAP19-6	Q3LI70	58 aa		1.44	□□□□□ -2.18
SYNE2-223	ENST00000557005	KMT2D	O14686	5537 aa		1.43	□□□□□ -2.18
SYNE2-223	ENST00000557005	KRTAP6-1	Q3LI64	71 aa		1.42	□□□□□ -2.18
SYNE2-223	ENST00000557005	SYNE1	Q8NF91	8797 aa	Known RBP	1.42	□□□□□ -2.18
SYNE2-223	ENST00000557005	OBSCN	Q5VST9	7968 aa		1.41	□□□□□ -2.18
SYNE2-223	ENST00000557005	MT1A	P04731	61 aa		1.41	□□□□□ -2.18
SYNE2-223	ENST00000557005	KRTAP6-2	Q3LI66	62 aa		1.4	□□□□□ -2.18
SYNE2-223	ENST00000557005	MUC19	Q7Z5P9	8384 aa		1.4	□□□□□ -2.19
SYNE2-223	ENST00000557005	MT4	P47944	62 aa		1.37	□□□□□ -2.19
SYNE2-223	ENST00000557005	SYNE2	Q8WXH0	6885 aa	Known RBP	1.36	□□□□□ -2.19
SYNE2-223	ENST00000557005	LCE1F	Q5T754	118 aa		1.34	□□□□□ -2.19
SYNE2-223	ENST00000557005	KRTAP5-4	Q6L8H1	288 aa		1.33	□□□□□ -2.2
SYNE2-223	ENST00000557005	KRTAP4-4	Q9BYR3	166 aa		1.33	□□□□□ -2.2
SYNE2-223	ENST00000557005	KRTAP20-1	Q3LI63	56 aa		1.33	□□□□□ -2.2
SYNE2-223	ENST00000557005	KRTAP5-1	Q6L8H4	278 aa		1.31	□□□□□ -2.2
SYNE2-223	ENST00000557005	LCE1B	Q5T7P3	118 aa		1.29	□□□□□ -2.2
SYNE2-223	ENST00000557005	KRTAP6-3	Q3LI67	103 aa		1.28	□□□□□ -2.21
SYNE2-223	ENST00000557005	MDN1	Q9NU22	5596 aa		1.25	□□□□□ -2.21
SYNE2-223	ENST00000557005	KRTAP5-5	Q701N2	237 aa	Predicted RBP	1.25	□□□□□ -2.21
SYNE2-223	ENST00000557005	SSPO	A2VEC9	5147 aa		1.24	□□□□□ -2.21
SYNE2-223	ENST00000557005	USH2A	O75445	5202 aa		1.24	□□□□□ -2.21
SYNE2-223	ENST00000557005	KRTAP5-9	P26371	169 aa		1.24	□□□□□ -2.21
SYNE2-223	ENST00000557005	LCE1A	Q5T7P2	110 aa		1.24	□□□□□ -2.21
SYNE2-223	ENST00000557005	HMCN1	Q96RW7	5635 aa		1.24	□□□□□ -2.21
SYNE2-223	ENST00000557005	AHNAK	Q09666	5890 aa	Known RBP	1.23	□□□□□ -2.21
SYNE2-223	ENST00000557005	KRTAP2-2	Q9BYT5	123 aa		1.23	□□□□□ -2.21
SYNE2-223	ENST00000557005	FSIP2	Q5CZC0	6907 aa		1.22	□□□□□ -2.21
SYNE2-223	ENST00000557005	AHNAK2	Q8IVF2	5795 aa		1.17	□□□□□ -2.22
SYNE2-223	ENST00000557005	LCE1E	Q5T753	118 aa		1.16	□□□□□ -2.22
SYNE2-223	ENST00000557005	NEB	P20929	6669 aa		1.11	□□□□□ -2.23
SYNE2-223	ENST00000557005	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	1.1	□□□□□ -2.23
SYNE2-223	ENST00000557005	MUC5B	Q9HC84	5762 aa	Predicted RBP	1.05	□□□□□ -2.24
SYNE2-223	ENST00000557005	MUC12	Q9UKN1	5478 aa		1.05	□□□□□ -2.24
SYNE2-223	ENST00000557005	KRTAP20-2	Q3LI61	65 aa		1.04	□□□□□ -2.24
SYNE2-223	ENST00000557005	LCE1C	Q5T751	118 aa		1.02	□□□□□ -2.25
SYNE2-223	ENST00000557005	MUC5AC	P98088	5654 aa		0.92	□□□□□ -2.26
SYNE2-223	ENST00000557005	KRTAP5-10	Q6L8G5	202 aa		0.9	□□□□□ -2.27
SYNE2-223	ENST00000557005	KRTAP5-8	O75690	187 aa		0.88	□□□□□ -2.27
SYNE2-223	ENST00000557005	KRTAP21-1	Q3LI58	79 aa		0.77	□□□□□ -2.29
SYNE2-223	ENST00000557005	KRTAP21-2	Q3LI59	83 aa		0.77	□□□□□ -2.29
SYNE2-223	ENST00000557005	KRTAP5-7	Q6L8G8	165 aa		0.75	□□□□□ -2.29
SYNE2-223	ENST00000557005	MUC16	Q8WXI7	14507 aa		0.66	□□□□□ -2.3
SYNE2-223	ENST00000557005	PHGR1	C9JFL3	82 aa		0.66	□□□□□ -2.3

Retrieved 78 of 20,778 RNA–protein pairs in 265.5 ms