RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 LOC100996750A0A140TA64 210 aa5.04□□□□□ -1.6
CUX1-215ENST00000556210 MT1LQ93083 61 aa5.03□□□□□ -1.6
CUX1-215ENST00000556210 KRTAP9-6A8MVA2 160 aa5.02□□□□□ -1.61
CUX1-215ENST00000556210 MT1EP04732 61 aa5.01□□□□□ -1.61
CUX1-215ENST00000556210 SSPOA2VEC9 5147 aa5□□□□□ -1.61
CUX1-215ENST00000556210 SYNE2Q8WXH0 6885 aaKnown RBP4.98□□□□□ -1.61
CUX1-215ENST00000556210 LCE3BQ5TA77 95 aa4.89□□□□□ -1.63
CUX1-215ENST00000556210 KRTAP19-6Q3LI70 58 aa4.82□□□□□ -1.64
CUX1-215ENST00000556210 KRTAP19-4Q3LI73 84 aa4.82□□□□□ -1.64
CUX1-215ENST00000556210 KRTAP19-3Q7Z4W3 81 aa4.81□□□□□ -1.64
CUX1-215ENST00000556210 KRTAP2-3P0C7H8 128 aa4.81□□□□□ -1.64
CUX1-215ENST00000556210 KRTAP2-4Q9BYR9 128 aa4.81□□□□□ -1.64
CUX1-215ENST00000556210 KRTAP2-1Q9BYU5 128 aa4.81□□□□□ -1.64
CUX1-215ENST00000556210 KRTAP12-4P60329 112 aa4.8□□□□□ -1.64
CUX1-215ENST00000556210 MACF1Q9UPN3 7388 aaKnown RBP4.77□□□□□ -1.65
CUX1-215ENST00000556210 MT1MQ8N339 61 aa4.76□□□□□ -1.65
CUX1-215ENST00000556210 LCE2DQ5TA82 110 aaPredicted RBP4.67□□□□□ -1.66
CUX1-215ENST00000556210 SPRR2EP22531 72 aa4.67□□□□□ -1.66
CUX1-215ENST00000556210 SPRR2BP35325 72 aa4.67□□□□□ -1.66
CUX1-215ENST00000556210 SPRR2AP35326 72 aa4.67□□□□□ -1.66
CUX1-215ENST00000556210 KRTAP4-9Q9BYQ8 210 aa4.66□□□□□ -1.66
CUX1-215ENST00000556210 KRTAP9-2Q9BYQ4 174 aa4.56□□□□□ -1.68
CUX1-215ENST00000556210 MDN1Q9NU22 5596 aa4.52□□□□□ -1.69
CUX1-215ENST00000556210 SPRR2DP22532 72 aa4.44□□□□□ -1.7
CUX1-215ENST00000556210 LCE3DQ9BYE3 92 aa4.42□□□□□ -1.7
CUX1-215ENST00000556210 LCE5AQ5TCM9 118 aa4.41□□□□□ -1.7
CUX1-215ENST00000556210 KRTAP6-1Q3LI64 71 aa4.37□□□□□ -1.71
CUX1-215ENST00000556210 LCE3EQ5T5B0 92 aa4.33□□□□□ -1.72
CUX1-215ENST00000556210 LCE1AQ5T7P2 110 aa4.28□□□□□ -1.72
CUX1-215ENST00000556210 PRM1P04553 51 aa4.24□□□□□ -1.73
CUX1-215ENST00000556210 MT1AP04731 61 aa4.2□□□□□ -1.74
CUX1-215ENST00000556210 MT4P47944 62 aa4.16□□□□□ -1.74
CUX1-215ENST00000556210 KRTAP9-7A8MTY7 169 aa4.11□□□□□ -1.75
CUX1-215ENST00000556210 KRTAP6-2Q3LI66 62 aa4.07□□□□□ -1.76
CUX1-215ENST00000556210 MT3P25713 68 aa4.03□□□□□ -1.76
CUX1-215ENST00000556210 KRTAP9-1A8MXZ3 250 aaPredicted RBP4□□□□□ -1.77
CUX1-215ENST00000556210 MUC19Q7Z5P9 8384 aa3.99□□□□□ -1.77
CUX1-215ENST00000556210 KRTAP9-6A0A140TA67 174 aa3.98□□□□□ -1.77
CUX1-215ENST00000556210 KRTAP9-4Q9BYQ2 154 aa3.94□□□□□ -1.78
CUX1-215ENST00000556210 KRTAP5-9P26371 169 aa3.9□□□□□ -1.79
CUX1-215ENST00000556210 KRTAP6-3Q3LI67 103 aa3.85□□□□□ -1.79
CUX1-215ENST00000556210 LCE1DQ5T752 114 aa3.84□□□□□ -1.8
CUX1-215ENST00000556210 KRTAP5-5Q701N2 237 aaPredicted RBP3.81□□□□□ -1.8
CUX1-215ENST00000556210 LCE1BQ5T7P3 118 aa3.79□□□□□ -1.8
CUX1-215ENST00000556210 KRTAP4-6Q9BYQ5 205 aa3.76□□□□□ -1.81
CUX1-215ENST00000556210 NEBP20929 6669 aa3.67□□□□□ -1.82
CUX1-215ENST00000556210 KRTAP2-2Q9BYT5 123 aa3.61□□□□□ -1.83
CUX1-215ENST00000556210 LCE1EQ5T753 118 aa3.6□□□□□ -1.83
CUX1-215ENST00000556210 KRTAP20-1Q3LI63 56 aa3.45□□□□□ -1.86
CUX1-215ENST00000556210 KRTAP20-2Q3LI61 65 aa3.45□□□□□ -1.86
CUX1-215ENST00000556210 LCE4AQ5TA78 99 aa3.43□□□□□ -1.86
CUX1-215ENST00000556210 MUC5ACP98088 5654 aa3.42□□□□□ -1.86
CUX1-215ENST00000556210 HMCN1Q96RW7 5635 aa3.4□□□□□ -1.86
CUX1-215ENST00000556210 KRTAP4-11Q9BYQ6 195 aa3.25□□□□□ -1.89
CUX1-215ENST00000556210 KRTAP5-4Q6L8H1 288 aa3.23□□□□□ -1.89
CUX1-215ENST00000556210 GPR98Q8WXG9 6306 aa3.16□□□□□ -1.9
CUX1-215ENST00000556210 KRTAP4-4Q9BYR3 166 aa3.07□□□□□ -1.92
CUX1-215ENST00000556210 KRTAP4-12Q9BQ66 201 aa2.96□□□□□ -1.94
CUX1-215ENST00000556210 KRTAP4-2Q9BYR5 136 aa2.96□□□□□ -1.94
CUX1-215ENST00000556210 KRTAP5-3Q6L8H2 238 aa2.95□□□□□ -1.94
CUX1-215ENST00000556210 KRTAP5-2Q701N4 177 aa2.95□□□□□ -1.94
CUX1-215ENST00000556210 LCE1FQ5T754 118 aa2.95□□□□□ -1.94
CUX1-215ENST00000556210 AHNAK2Q8IVF2 5795 aa2.88□□□□□ -1.95
CUX1-215ENST00000556210 MUC5BQ9HC84 5762 aaPredicted RBP2.85□□□□□ -1.95
CUX1-215ENST00000556210 KRTAP5-10Q6L8G5 202 aa2.83□□□□□ -1.96
CUX1-215ENST00000556210 LCE1CQ5T751 118 aa2.82□□□□□ -1.96
CUX1-215ENST00000556210 KRTAP9-9Q9BYP9 154 aa2.69□□□□□ -1.98
CUX1-215ENST00000556210 KRTAP5-1Q6L8H4 278 aa2.67□□□□□ -1.98
CUX1-215ENST00000556210 KRTAP5-8O75690 187 aa2.67□□□□□ -1.98
CUX1-215ENST00000556210 KRTAP21-2Q3LI59 83 aa2.55□□□□□ -2
CUX1-215ENST00000556210 KRTAP21-1Q3LI58 79 aa2.34□□□□□ -2.04
CUX1-215ENST00000556210 AHNAKQ09666 5890 aaKnown RBP2.3□□□□□ -2.04
CUX1-215ENST00000556210 KRTAP5-11Q6L8G4 156 aa2.29□□□□□ -2.04
CUX1-215ENST00000556210 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.29□□□□□ -2.04
CUX1-215ENST00000556210 KRTAP5-7Q6L8G8 165 aa2.09□□□□□ -2.07
CUX1-215ENST00000556210 PHGR1C9JFL3 82 aa2.01□□□□□ -2.09
CUX1-215ENST00000556210 MUC16Q8WXI7 14507 aa1.31□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 63.3 ms