RNA–Protein interactions for RNA: ENST00000553709.5

ARHGEF40-202, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 5,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-202ENST00000553709 KRTAP4-7Q9BYR0 210 aa5.02□□□□□ -1.61
ARHGEF40-202ENST00000553709 KRTAP19-3Q7Z4W3 81 aa5.02□□□□□ -1.61
ARHGEF40-202ENST00000553709 LCE3DQ9BYE3 92 aa5.01□□□□□ -1.61
ARHGEF40-202ENST00000553709 MT1EP04732 61 aa4.99□□□□□ -1.61
ARHGEF40-202ENST00000553709 KRTAP9-2Q9BYQ4 174 aa4.94□□□□□ -1.62
ARHGEF40-202ENST00000553709 LCE3EQ5T5B0 92 aa4.94□□□□□ -1.62
ARHGEF40-202ENST00000553709 FSIP2Q5CZC0 6907 aa4.83□□□□□ -1.64
ARHGEF40-202ENST00000553709 MT1MQ8N339 61 aa4.82□□□□□ -1.64
ARHGEF40-202ENST00000553709 KRTAP19-7Q3SYF9 63 aa4.78□□□□□ -1.64
ARHGEF40-202ENST00000553709 KRTAP9-6A0A140TA67 174 aa4.75□□□□□ -1.65
ARHGEF40-202ENST00000553709 LOC100996750A0A140TA64 210 aa4.72□□□□□ -1.65
ARHGEF40-202ENST00000553709 KRTAP4-3Q9BYR4 195 aa4.69□□□□□ -1.66
ARHGEF40-202ENST00000553709 MT3P25713 68 aa4.64□□□□□ -1.67
ARHGEF40-202ENST00000553709 MT4P47944 62 aa4.64□□□□□ -1.67
ARHGEF40-202ENST00000553709 SYNE1Q8NF91 8797 aaKnown RBP4.63□□□□□ -1.67
ARHGEF40-202ENST00000553709 USH2AO75445 5202 aa4.61□□□□□ -1.67
ARHGEF40-202ENST00000553709 PRM1P04553 51 aa4.59□□□□□ -1.68
ARHGEF40-202ENST00000553709 KRTAP2-3P0C7H8 128 aa4.51□□□□□ -1.69
ARHGEF40-202ENST00000553709 KRTAP2-4Q9BYR9 128 aa4.51□□□□□ -1.69
ARHGEF40-202ENST00000553709 KRTAP2-1Q9BYU5 128 aa4.51□□□□□ -1.69
ARHGEF40-202ENST00000553709 MT1AP04731 61 aa4.48□□□□□ -1.69
ARHGEF40-202ENST00000553709 KRTAP20-1Q3LI63 56 aa4.45□□□□□ -1.7
ARHGEF40-202ENST00000553709 KRTAP9-7A8MTY7 169 aa4.45□□□□□ -1.7
ARHGEF40-202ENST00000553709 KRTAP6-3Q3LI67 103 aa4.41□□□□□ -1.7
ARHGEF40-202ENST00000553709 KRTAP9-6A8MVA2 160 aa4.39□□□□□ -1.71
ARHGEF40-202ENST00000553709 LCE5AQ5TCM9 118 aa4.39□□□□□ -1.71
ARHGEF40-202ENST00000553709 KRTAP4-9Q9BYQ8 210 aa4.38□□□□□ -1.71
ARHGEF40-202ENST00000553709 LCE1AQ5T7P2 110 aa4.38□□□□□ -1.71
ARHGEF40-202ENST00000553709 LCE1DQ5T752 114 aa4.36□□□□□ -1.71
ARHGEF40-202ENST00000553709 LCE1BQ5T7P3 118 aa4.36□□□□□ -1.71
ARHGEF40-202ENST00000553709 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.34□□□□□ -1.71
ARHGEF40-202ENST00000553709 SYNE2Q8WXH0 6885 aaKnown RBP4.31□□□□□ -1.72
ARHGEF40-202ENST00000553709 SSPOA2VEC9 5147 aa4.28□□□□□ -1.72
ARHGEF40-202ENST00000553709 KMT2DO14686 5537 aa4.27□□□□□ -1.73
ARHGEF40-202ENST00000553709 FCGBPQ9Y6R7 5405 aaPredicted RBP4.23□□□□□ -1.73
ARHGEF40-202ENST00000553709 KRTAP6-1Q3LI64 71 aa4.22□□□□□ -1.73
ARHGEF40-202ENST00000553709 OBSCNQ5VST9 7968 aa4.22□□□□□ -1.73
ARHGEF40-202ENST00000553709 LCE4AQ5TA78 99 aa4.15□□□□□ -1.74
ARHGEF40-202ENST00000553709 MACF1Q9UPN3 7388 aaKnown RBP4.15□□□□□ -1.75
ARHGEF40-202ENST00000553709 KRTAP2-2Q9BYT5 123 aa4.15□□□□□ -1.75
ARHGEF40-202ENST00000553709 KRTAP5-9P26371 169 aa4.14□□□□□ -1.75
ARHGEF40-202ENST00000553709 KRTAP6-2Q3LI66 62 aa4.12□□□□□ -1.75
ARHGEF40-202ENST00000553709 KRTAP9-4Q9BYQ2 154 aa4.12□□□□□ -1.75
ARHGEF40-202ENST00000553709 MUC12Q9UKN1 5478 aa3.99□□□□□ -1.77
ARHGEF40-202ENST00000553709 DSTQ03001 7570 aaKnown RBP3.94□□□□□ -1.78
ARHGEF40-202ENST00000553709 NEBP20929 6669 aa3.79□□□□□ -1.8
ARHGEF40-202ENST00000553709 LCE1CQ5T751 118 aa3.74□□□□□ -1.81
ARHGEF40-202ENST00000553709 LCE1EQ5T753 118 aa3.74□□□□□ -1.81
ARHGEF40-202ENST00000553709 LCE1FQ5T754 118 aa3.74□□□□□ -1.81
ARHGEF40-202ENST00000553709 MDN1Q9NU22 5596 aa3.7□□□□□ -1.82
ARHGEF40-202ENST00000553709 KRTAP9-9Q9BYP9 154 aa3.6□□□□□ -1.83
ARHGEF40-202ENST00000553709 KRTAP4-6Q9BYQ5 205 aa3.58□□□□□ -1.84
ARHGEF40-202ENST00000553709 KRTAP5-5Q701N2 237 aaPredicted RBP3.57□□□□□ -1.84
ARHGEF40-202ENST00000553709 MUC19Q7Z5P9 8384 aa3.54□□□□□ -1.84
ARHGEF40-202ENST00000553709 KRTAP20-2Q3LI61 65 aa3.54□□□□□ -1.84
ARHGEF40-202ENST00000553709 KRTAP5-4Q6L8H1 288 aa3.4□□□□□ -1.87
ARHGEF40-202ENST00000553709 KRTAP4-11Q9BYQ6 195 aa3.39□□□□□ -1.87
ARHGEF40-202ENST00000553709 GPR98Q8WXG9 6306 aa3.34□□□□□ -1.87
ARHGEF40-202ENST00000553709 KRTAP4-4Q9BYR3 166 aa3.06□□□□□ -1.92
ARHGEF40-202ENST00000553709 KRTAP5-2Q701N4 177 aa3.02□□□□□ -1.93
ARHGEF40-202ENST00000553709 KRTAP4-12Q9BQ66 201 aa3.02□□□□□ -1.93
ARHGEF40-202ENST00000553709 KRTAP4-2Q9BYR5 136 aa3.02□□□□□ -1.93
ARHGEF40-202ENST00000553709 KRTAP5-3Q6L8H2 238 aa2.98□□□□□ -1.93
ARHGEF40-202ENST00000553709 HMCN1Q96RW7 5635 aa2.97□□□□□ -1.93
ARHGEF40-202ENST00000553709 MUC5ACP98088 5654 aa2.91□□□□□ -1.94
ARHGEF40-202ENST00000553709 AHNAK2Q8IVF2 5795 aa2.83□□□□□ -1.96
ARHGEF40-202ENST00000553709 KRTAP5-8O75690 187 aa2.7□□□□□ -1.98
ARHGEF40-202ENST00000553709 KRTAP5-1Q6L8H4 278 aa2.61□□□□□ -1.99
ARHGEF40-202ENST00000553709 KRTAP5-10Q6L8G5 202 aa2.61□□□□□ -1.99
ARHGEF40-202ENST00000553709 KRTAP5-11Q6L8G4 156 aa2.45□□□□□ -2.02
ARHGEF40-202ENST00000553709 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.39□□□□□ -2.03
ARHGEF40-202ENST00000553709 KRTAP21-2Q3LI59 83 aa2.38□□□□□ -2.03
ARHGEF40-202ENST00000553709 MUC5BQ9HC84 5762 aaPredicted RBP2.37□□□□□ -2.03
ARHGEF40-202ENST00000553709 PHGR1C9JFL3 82 aa2.35□□□□□ -2.03
ARHGEF40-202ENST00000553709 KRTAP5-7Q6L8G8 165 aa2.34□□□□□ -2.04
ARHGEF40-202ENST00000553709 AHNAKQ09666 5890 aaKnown RBP2.31□□□□□ -2.04
ARHGEF40-202ENST00000553709 KRTAP21-1Q3LI58 79 aa2.03□□□□□ -2.08
ARHGEF40-202ENST00000553709 MUC16Q8WXI7 14507 aa1.37□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 210.7 ms