RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 MT1LQ93083 61 aa5.47□□□□□ -1.53
CUX1-213ENST00000549414 MT1EP04732 61 aa5.46□□□□□ -1.54
CUX1-213ENST00000549414 USH2AO75445 5202 aa5.4□□□□□ -1.54
CUX1-213ENST00000549414 KRTAP19-3Q7Z4W3 81 aa5.37□□□□□ -1.55
CUX1-213ENST00000549414 SYNE2Q8WXH0 6885 aaKnown RBP5.36□□□□□ -1.55
CUX1-213ENST00000549414 KRTAP4-3Q9BYR4 195 aa5.33□□□□□ -1.56
CUX1-213ENST00000549414 DSTQ03001 7570 aaKnown RBP5.33□□□□□ -1.56
CUX1-213ENST00000549414 KRTAP19-7Q3SYF9 63 aa5.32□□□□□ -1.56
CUX1-213ENST00000549414 KRTAP19-6Q3LI70 58 aa5.32□□□□□ -1.56
CUX1-213ENST00000549414 KRTAP12-4P60329 112 aa5.3□□□□□ -1.56
CUX1-213ENST00000549414 LOC100996750A0A140TA64 210 aa5.29□□□□□ -1.56
CUX1-213ENST00000549414 FCGBPQ9Y6R7 5405 aaPredicted RBP5.27□□□□□ -1.57
CUX1-213ENST00000549414 KMT2DO14686 5537 aa5.25□□□□□ -1.57
CUX1-213ENST00000549414 MT1MQ8N339 61 aa5.23□□□□□ -1.57
CUX1-213ENST00000549414 MACF1Q9UPN3 7388 aaKnown RBP5.15□□□□□ -1.59
CUX1-213ENST00000549414 KRTAP9-6A0A140TA67 174 aa5.13□□□□□ -1.59
CUX1-213ENST00000549414 LCE2DQ5TA82 110 aaPredicted RBP5.1□□□□□ -1.59
CUX1-213ENST00000549414 MT4P47944 62 aa5.07□□□□□ -1.6
CUX1-213ENST00000549414 KRTAP9-6A8MVA2 160 aa5.06□□□□□ -1.6
CUX1-213ENST00000549414 LCE3DQ9BYE3 92 aa5.05□□□□□ -1.6
CUX1-213ENST00000549414 LCE3EQ5T5B0 92 aa4.94□□□□□ -1.62
CUX1-213ENST00000549414 MUC12Q9UKN1 5478 aa4.89□□□□□ -1.63
CUX1-213ENST00000549414 KRTAP9-7A8MTY7 169 aa4.89□□□□□ -1.63
CUX1-213ENST00000549414 KRTAP4-9Q9BYQ8 210 aa4.87□□□□□ -1.63
CUX1-213ENST00000549414 KRTAP2-3P0C7H8 128 aa4.86□□□□□ -1.63
CUX1-213ENST00000549414 KRTAP2-4Q9BYR9 128 aa4.86□□□□□ -1.63
CUX1-213ENST00000549414 KRTAP2-1Q9BYU5 128 aa4.86□□□□□ -1.63
CUX1-213ENST00000549414 SSPOA2VEC9 5147 aa4.85□□□□□ -1.63
CUX1-213ENST00000549414 MT3P25713 68 aa4.78□□□□□ -1.65
CUX1-213ENST00000549414 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.76□□□□□ -1.65
CUX1-213ENST00000549414 LCE5AQ5TCM9 118 aa4.73□□□□□ -1.65
CUX1-213ENST00000549414 MT1AP04731 61 aa4.72□□□□□ -1.65
CUX1-213ENST00000549414 LCE1DQ5T752 114 aa4.69□□□□□ -1.66
CUX1-213ENST00000549414 LCE1BQ5T7P3 118 aa4.68□□□□□ -1.66
CUX1-213ENST00000549414 KRTAP6-1Q3LI64 71 aa4.67□□□□□ -1.66
CUX1-213ENST00000549414 MDN1Q9NU22 5596 aa4.66□□□□□ -1.66
CUX1-213ENST00000549414 KRTAP6-3Q3LI67 103 aa4.65□□□□□ -1.67
CUX1-213ENST00000549414 LCE1AQ5T7P2 110 aa4.64□□□□□ -1.67
CUX1-213ENST00000549414 PRM1P04553 51 aa4.63□□□□□ -1.67
CUX1-213ENST00000549414 KRTAP20-1Q3LI63 56 aa4.62□□□□□ -1.67
CUX1-213ENST00000549414 KRTAP6-2Q3LI66 62 aa4.46□□□□□ -1.7
CUX1-213ENST00000549414 KRTAP2-2Q9BYT5 123 aa4.38□□□□□ -1.71
CUX1-213ENST00000549414 KRTAP9-4Q9BYQ2 154 aa4.36□□□□□ -1.71
CUX1-213ENST00000549414 MUC19Q7Z5P9 8384 aa4.35□□□□□ -1.71
CUX1-213ENST00000549414 NEBP20929 6669 aa4.33□□□□□ -1.72
CUX1-213ENST00000549414 LCE4AQ5TA78 99 aa4.22□□□□□ -1.73
CUX1-213ENST00000549414 KRTAP5-9P26371 169 aa4.2□□□□□ -1.74
CUX1-213ENST00000549414 GPR98Q8WXG9 6306 aa4.17□□□□□ -1.74
CUX1-213ENST00000549414 KRTAP4-6Q9BYQ5 205 aa4.02□□□□□ -1.77
CUX1-213ENST00000549414 LCE1CQ5T751 118 aa3.87□□□□□ -1.79
CUX1-213ENST00000549414 LCE1EQ5T753 118 aa3.87□□□□□ -1.79
CUX1-213ENST00000549414 LCE1FQ5T754 118 aa3.87□□□□□ -1.79
CUX1-213ENST00000549414 KRTAP20-2Q3LI61 65 aa3.79□□□□□ -1.8
CUX1-213ENST00000549414 KRTAP5-5Q701N2 237 aaPredicted RBP3.75□□□□□ -1.81
CUX1-213ENST00000549414 MUC5ACP98088 5654 aa3.71□□□□□ -1.82
CUX1-213ENST00000549414 KRTAP9-9Q9BYP9 154 aa3.69□□□□□ -1.82
CUX1-213ENST00000549414 HMCN1Q96RW7 5635 aa3.61□□□□□ -1.83
CUX1-213ENST00000549414 KRTAP4-11Q9BYQ6 195 aa3.52□□□□□ -1.85
CUX1-213ENST00000549414 KRTAP4-12Q9BQ66 201 aa3.46□□□□□ -1.86
CUX1-213ENST00000549414 KRTAP4-2Q9BYR5 136 aa3.46□□□□□ -1.86
CUX1-213ENST00000549414 KRTAP5-4Q6L8H1 288 aa3.43□□□□□ -1.86
CUX1-213ENST00000549414 KRTAP4-4Q9BYR3 166 aa3.42□□□□□ -1.86
CUX1-213ENST00000549414 AHNAK2Q8IVF2 5795 aa3.36□□□□□ -1.87
CUX1-213ENST00000549414 KRTAP5-3Q6L8H2 238 aa3.26□□□□□ -1.89
CUX1-213ENST00000549414 KRTAP5-2Q701N4 177 aa3.06□□□□□ -1.92
CUX1-213ENST00000549414 KRTAP5-8O75690 187 aa3□□□□□ -1.93
CUX1-213ENST00000549414 KRTAP5-10Q6L8G5 202 aa2.92□□□□□ -1.94
CUX1-213ENST00000549414 AHNAKQ09666 5890 aaKnown RBP2.85□□□□□ -1.95
CUX1-213ENST00000549414 MUC5BQ9HC84 5762 aaPredicted RBP2.75□□□□□ -1.97
CUX1-213ENST00000549414 KRTAP5-1Q6L8H4 278 aa2.73□□□□□ -1.97
CUX1-213ENST00000549414 KRTAP21-2Q3LI59 83 aa2.6□□□□□ -1.99
CUX1-213ENST00000549414 KRTAP5-11Q6L8G4 156 aa2.52□□□□□ -2.01
CUX1-213ENST00000549414 PHGR1C9JFL3 82 aa2.5□□□□□ -2.01
CUX1-213ENST00000549414 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.37□□□□□ -2.03
CUX1-213ENST00000549414 KRTAP21-1Q3LI58 79 aa2.18□□□□□ -2.06
CUX1-213ENST00000549414 KRTAP5-7Q6L8G8 165 aa2.17□□□□□ -2.06
CUX1-213ENST00000549414 MUC16Q8WXI7 14507 aa1.53□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 12.2 ms