RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 SPTSSBQ8NFR3 76 aa4.43□□□□□ -1.7
SCAF11-208ENST00000546534 FAM240AA0A1B0GVK7 77 aa4.42□□□□□ -1.7
SCAF11-208ENST00000546534 ACYP2P14621 99 aa4.4□□□□□ -1.71
SCAF11-208ENST00000546534 KRTAP20-2Q3LI61 65 aa4.39□□□□□ -1.71
SCAF11-208ENST00000546534 KRTAP9-6A8MVA2 160 aa4.36□□□□□ -1.71
SCAF11-208ENST00000546534 LINC00643Q86TS7 51 aa4.36□□□□□ -1.71
SCAF11-208ENST00000546534 A8MU10 97 aa4.33□□□□□ -1.72
SCAF11-208ENST00000546534 CHKB-CPT1BH3BT56 60 aa4.32□□□□□ -1.72
SCAF11-208ENST00000546534 LOC105371267A0A1B0GV96 52 aa4.27□□□□□ -1.73
SCAF11-208ENST00000546534 C10orf95Q9H7T3 257 aa4.27□□□□□ -1.73
SCAF11-208ENST00000546534 SCGB1A1P11684 91 aa4.23□□□□□ -1.73
SCAF11-208ENST00000546534 LCE3AQ5TA76 89 aa4.23□□□□□ -1.73
SCAF11-208ENST00000546534 KRTAP5-5Q701N2 237 aaPredicted RBP4.23□□□□□ -1.73
SCAF11-208ENST00000546534 KRTAP12-4P60329 112 aa4.22□□□□□ -1.73
SCAF11-208ENST00000546534 SPINT4Q6UDR6 99 aa4.22□□□□□ -1.73
SCAF11-208ENST00000546534 SPATA8Q6RVD6 105 aa4.16□□□□□ -1.74
SCAF11-208ENST00000546534 OBSCNQ5VST9 7968 aa4.16□□□□□ -1.74
SCAF11-208ENST00000546534 KRTAP12-1P59990 96 aa4.15□□□□□ -1.75
SCAF11-208ENST00000546534 LCE3EQ5T5B0 92 aa4.15□□□□□ -1.75
SCAF11-208ENST00000546534 SYNE1Q8NF91 8797 aaKnown RBP4.13□□□□□ -1.75
SCAF11-208ENST00000546534 AHNAKQ09666 5890 aaKnown RBP4.13□□□□□ -1.75
SCAF11-208ENST00000546534 MUC5ACP98088 5654 aa4.11□□□□□ -1.75
SCAF11-208ENST00000546534 TNP1P09430 55 aa4.07□□□□□ -1.76
SCAF11-208ENST00000546534 KRTAP12-3P60328 96 aa4.05□□□□□ -1.76
SCAF11-208ENST00000546534 MUC5BQ9HC84 5762 aaPredicted RBP4.04□□□□□ -1.76
SCAF11-208ENST00000546534 A0A1B0GU33 70 aa4.03□□□□□ -1.76
SCAF11-208ENST00000546534 PCP4L1A6NKN8 68 aa4.03□□□□□ -1.76
SCAF11-208ENST00000546534 SEC61GP60059 68 aa4.03□□□□□ -1.76
SCAF11-208ENST00000546534 KRTAP5-2Q701N4 177 aa4.03□□□□□ -1.76
SCAF11-208ENST00000546534 SERP1Q9Y6X1 66 aa4.03□□□□□ -1.76
SCAF11-208ENST00000546534 SNURFQ9Y675 71 aa4.02□□□□□ -1.77
SCAF11-208ENST00000546534 SPANXA2-OT1Q8N9U9 137 aa4.01□□□□□ -1.77
SCAF11-208ENST00000546534 KRTAP5-8O75690 187 aa4□□□□□ -1.77
SCAF11-208ENST00000546534 SMIM20Q8N5G0 67 aa3.98□□□□□ -1.77
SCAF11-208ENST00000546534 COA5Q86WW8 74 aa3.94□□□□□ -1.78
SCAF11-208ENST00000546534 SMIM26A0A096LP01 95 aa3.91□□□□□ -1.78
SCAF11-208ENST00000546534 J3QR89 54 aa3.88□□□□□ -1.79
SCAF11-208ENST00000546534 KRTAP6-1Q3LI64 71 aa3.82□□□□□ -1.8
SCAF11-208ENST00000546534 MT1AP04731 61 aa3.8□□□□□ -1.8
SCAF11-208ENST00000546534 A0A1B0GV90 55 aa3.77□□□□□ -1.81
SCAF11-208ENST00000546534 SERP2Q8N6R1 65 aa3.75□□□□□ -1.81
SCAF11-208ENST00000546534 A0A1B0GU69 56 aa3.74□□□□□ -1.81
SCAF11-208ENST00000546534 KRTAP6-2Q3LI66 62 aa3.74□□□□□ -1.81
SCAF11-208ENST00000546534 KRTAP25-1Q3LHN0 102 aa3.66□□□□□ -1.82
SCAF11-208ENST00000546534 H7BZZ5 65 aa3.53□□□□□ -1.84
SCAF11-208ENST00000546534 K7ERU9 68 aa3.52□□□□□ -1.85
SCAF11-208ENST00000546534 PRR15LQ9BU68 103 aa3.48□□□□□ -1.85
SCAF11-208ENST00000546534 COX7CP15954 63 aa3.45□□□□□ -1.86
SCAF11-208ENST00000546534 LCE3DQ9BYE3 92 aa3.43□□□□□ -1.86
SCAF11-208ENST00000546534 UQCR11O14957 56 aa3.36□□□□□ -1.87
SCAF11-208ENST00000546534 LINC01558Q9Y6Z2 57 aa3.36□□□□□ -1.87
SCAF11-208ENST00000546534 K7ERS5 55 aa3.25□□□□□ -1.89
SCAF11-208ENST00000546534 MIR22HGQ0VDD5 57 aa3.25□□□□□ -1.89
SCAF11-208ENST00000546534 LCE1CQ5T751 118 aa3.23□□□□□ -1.89
SCAF11-208ENST00000546534 LCE1BQ5T7P3 118 aa3.23□□□□□ -1.89
SCAF11-208ENST00000546534 RPS28P62857 69 aaKnown RBP3.16□□□□□ -1.9
SCAF11-208ENST00000546534 ATP5EP56381 51 aaPredicted RBP3.12□□□□□ -1.91
SCAF11-208ENST00000546534 ANAPC13Q9BS18 74 aa3.06□□□□□ -1.92
SCAF11-208ENST00000546534 CCDC179H3BU77 68 aa3.05□□□□□ -1.92
SCAF11-208ENST00000546534 CDC42SE1Q9NRR8 79 aa3.03□□□□□ -1.92
SCAF11-208ENST00000546534 Q1T7F1 81 aa3□□□□□ -1.93
SCAF11-208ENST00000546534 ROMO1P60602 79 aa2.96□□□□□ -1.94
SCAF11-208ENST00000546534 PSPHP1O15172 72 aa2.94□□□□□ -1.94
SCAF11-208ENST00000546534 V9GYY9 64 aa2.9□□□□□ -1.95
SCAF11-208ENST00000546534 TMEM258P61165 79 aa2.86□□□□□ -1.95
SCAF11-208ENST00000546534 PHGR1C9JFL3 82 aa2.81□□□□□ -1.96
SCAF11-208ENST00000546534 LUZP6Q538Z0 58 aa2.8□□□□□ -1.96
SCAF11-208ENST00000546534 PRO0628Q9UI54 55 aa2.79□□□□□ -1.96
SCAF11-208ENST00000546534 A6NED7 52 aa2.78□□□□□ -1.96
SCAF11-208ENST00000546534 MUC19Q7Z5P9 8384 aa2.66□□□□□ -1.98
SCAF11-208ENST00000546534 KRTAP21-2Q3LI59 83 aa2.52□□□□□ -2.01
SCAF11-208ENST00000546534 KRTAP21-1Q3LI58 79 aa2.13□□□□□ -2.07
SCAF11-208ENST00000546534 PMAIP1Q13794 54 aa2.06□□□□□ -2.08
SCAF11-208ENST00000546534 KTN1-AS1Q86SY8 53 aa1.96□□□□□ -2.1
SCAF11-208ENST00000546534 BRK1Q8WUW1 75 aa1.82□□□□□ -2.12
SCAF11-208ENST00000546534 MUC16Q8WXI7 14507 aa1.65□□□□□ -2.15
SCAF11-208ENST00000546534 PRM1P04553 51 aa1.49□□□□□ -2.17
SCAF11-208ENST00000546534 INE1O15225 51 aa1.47□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 42 ms