RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 KRTAP19-4Q3LI73 84 aa5.2□□□□□ -1.58
CUX1-211ENST00000546411 KRTAP4-3Q9BYR4 195 aa5.2□□□□□ -1.58
CUX1-211ENST00000546411 KRTAP19-7Q3SYF9 63 aa5.19□□□□□ -1.58
CUX1-211ENST00000546411 LOC100996750A0A140TA64 210 aa5.16□□□□□ -1.58
CUX1-211ENST00000546411 KRTAP19-3Q7Z4W3 81 aa5.13□□□□□ -1.59
CUX1-211ENST00000546411 KRTAP12-4P60329 112 aa5.11□□□□□ -1.59
CUX1-211ENST00000546411 SPRR2EP22531 72 aa5.11□□□□□ -1.59
CUX1-211ENST00000546411 SPRR2BP35325 72 aa5.11□□□□□ -1.59
CUX1-211ENST00000546411 SPRR2AP35326 72 aa5.11□□□□□ -1.59
CUX1-211ENST00000546411 KRTAP19-6Q3LI70 58 aa5.07□□□□□ -1.6
CUX1-211ENST00000546411 KRTAP9-6A8MVA2 160 aa5.03□□□□□ -1.6
CUX1-211ENST00000546411 MT1MQ8N339 61 aa5.02□□□□□ -1.61
CUX1-211ENST00000546411 SYNE2Q8WXH0 6885 aaKnown RBP5□□□□□ -1.61
CUX1-211ENST00000546411 MUC12Q9UKN1 5478 aa4.93□□□□□ -1.62
CUX1-211ENST00000546411 SPRR2DP22532 72 aa4.89□□□□□ -1.63
CUX1-211ENST00000546411 KRTAP9-2Q9BYQ4 174 aa4.83□□□□□ -1.64
CUX1-211ENST00000546411 LCE3DQ9BYE3 92 aa4.82□□□□□ -1.64
CUX1-211ENST00000546411 SSPOA2VEC9 5147 aa4.81□□□□□ -1.64
CUX1-211ENST00000546411 KRTAP4-9Q9BYQ8 210 aa4.77□□□□□ -1.65
CUX1-211ENST00000546411 KRTAP2-3P0C7H8 128 aa4.76□□□□□ -1.65
CUX1-211ENST00000546411 KRTAP2-4Q9BYR9 128 aa4.76□□□□□ -1.65
CUX1-211ENST00000546411 KRTAP2-1Q9BYU5 128 aa4.76□□□□□ -1.65
CUX1-211ENST00000546411 LCE3EQ5T5B0 92 aa4.71□□□□□ -1.65
CUX1-211ENST00000546411 LCE2DQ5TA82 110 aaPredicted RBP4.71□□□□□ -1.66
CUX1-211ENST00000546411 MACF1Q9UPN3 7388 aaKnown RBP4.66□□□□□ -1.66
CUX1-211ENST00000546411 LCE5AQ5TCM9 118 aa4.57□□□□□ -1.68
CUX1-211ENST00000546411 KRTAP6-1Q3LI64 71 aa4.53□□□□□ -1.68
CUX1-211ENST00000546411 MT1AP04731 61 aa4.51□□□□□ -1.69
CUX1-211ENST00000546411 MT4P47944 62 aa4.49□□□□□ -1.69
CUX1-211ENST00000546411 PRM1P04553 51 aa4.47□□□□□ -1.69
CUX1-211ENST00000546411 LCE1AQ5T7P2 110 aa4.45□□□□□ -1.7
CUX1-211ENST00000546411 MT3P25713 68 aa4.44□□□□□ -1.7
CUX1-211ENST00000546411 MDN1Q9NU22 5596 aa4.3□□□□□ -1.72
CUX1-211ENST00000546411 KRTAP9-6A0A140TA67 174 aa4.29□□□□□ -1.72
CUX1-211ENST00000546411 KRTAP6-2Q3LI66 62 aa4.29□□□□□ -1.72
CUX1-211ENST00000546411 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.23□□□□□ -1.73
CUX1-211ENST00000546411 KRTAP9-7A8MTY7 169 aa4.22□□□□□ -1.73
CUX1-211ENST00000546411 LCE1DQ5T752 114 aa4.2□□□□□ -1.74
CUX1-211ENST00000546411 KRTAP9-4Q9BYQ2 154 aa4.18□□□□□ -1.74
CUX1-211ENST00000546411 LCE1BQ5T7P3 118 aa4.16□□□□□ -1.74
CUX1-211ENST00000546411 KRTAP6-3Q3LI67 103 aa4.16□□□□□ -1.74
CUX1-211ENST00000546411 KRTAP5-9P26371 169 aa4.03□□□□□ -1.76
CUX1-211ENST00000546411 KRTAP4-6Q9BYQ5 205 aa3.86□□□□□ -1.79
CUX1-211ENST00000546411 MUC19Q7Z5P9 8384 aa3.83□□□□□ -1.8
CUX1-211ENST00000546411 KRTAP20-1Q3LI63 56 aa3.82□□□□□ -1.8
CUX1-211ENST00000546411 NEBP20929 6669 aa3.8□□□□□ -1.8
CUX1-211ENST00000546411 LCE4AQ5TA78 99 aa3.79□□□□□ -1.8
CUX1-211ENST00000546411 KRTAP2-2Q9BYT5 123 aa3.78□□□□□ -1.8
CUX1-211ENST00000546411 KRTAP5-5Q701N2 237 aaPredicted RBP3.68□□□□□ -1.82
CUX1-211ENST00000546411 LCE1EQ5T753 118 aa3.68□□□□□ -1.82
CUX1-211ENST00000546411 KRTAP20-2Q3LI61 65 aa3.62□□□□□ -1.83
CUX1-211ENST00000546411 MUC5ACP98088 5654 aa3.49□□□□□ -1.85
CUX1-211ENST00000546411 KRTAP4-11Q9BYQ6 195 aa3.42□□□□□ -1.86
CUX1-211ENST00000546411 HMCN1Q96RW7 5635 aa3.32□□□□□ -1.88
CUX1-211ENST00000546411 KRTAP5-4Q6L8H1 288 aa3.29□□□□□ -1.88
CUX1-211ENST00000546411 LCE1CQ5T751 118 aa3.23□□□□□ -1.89
CUX1-211ENST00000546411 LCE1FQ5T754 118 aa3.23□□□□□ -1.89
CUX1-211ENST00000546411 KRTAP4-4Q9BYR3 166 aa3.21□□□□□ -1.89
CUX1-211ENST00000546411 GPR98Q8WXG9 6306 aa3.21□□□□□ -1.9
CUX1-211ENST00000546411 KRTAP4-12Q9BQ66 201 aa3.12□□□□□ -1.91
CUX1-211ENST00000546411 KRTAP4-2Q9BYR5 136 aa3.12□□□□□ -1.91
CUX1-211ENST00000546411 KRTAP9-9Q9BYP9 154 aa3.06□□□□□ -1.92
CUX1-211ENST00000546411 KRTAP5-2Q701N4 177 aa2.98□□□□□ -1.93
CUX1-211ENST00000546411 KRTAP5-3Q6L8H2 238 aa2.97□□□□□ -1.93
CUX1-211ENST00000546411 AHNAK2Q8IVF2 5795 aa2.93□□□□□ -1.94
CUX1-211ENST00000546411 KRTAP5-10Q6L8G5 202 aa2.87□□□□□ -1.95
CUX1-211ENST00000546411 KRTAP5-8O75690 187 aa2.77□□□□□ -1.97
CUX1-211ENST00000546411 MUC5BQ9HC84 5762 aaPredicted RBP2.73□□□□□ -1.97
CUX1-211ENST00000546411 KRTAP5-1Q6L8H4 278 aa2.67□□□□□ -1.98
CUX1-211ENST00000546411 KRTAP21-2Q3LI59 83 aa2.56□□□□□ -2
CUX1-211ENST00000546411 AHNAKQ09666 5890 aaKnown RBP2.46□□□□□ -2.02
CUX1-211ENST00000546411 KRTAP5-11Q6L8G4 156 aa2.42□□□□□ -2.02
CUX1-211ENST00000546411 KRTAP21-1Q3LI58 79 aa2.36□□□□□ -2.03
CUX1-211ENST00000546411 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.31□□□□□ -2.04
CUX1-211ENST00000546411 KRTAP5-7Q6L8G8 165 aa2.11□□□□□ -2.07
CUX1-211ENST00000546411 PHGR1C9JFL3 82 aa2.08□□□□□ -2.08
CUX1-211ENST00000546411 MUC16Q8WXI7 14507 aa1.41□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 77.9 ms