RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 KRTAP2-3P0C7H8 128 aa6.02□□□□□ -1.45
VIM-209ENST00000544301 KRTAP2-4Q9BYR9 128 aa6.02□□□□□ -1.45
VIM-209ENST00000544301 KRTAP2-1Q9BYU5 128 aa6.02□□□□□ -1.45
VIM-209ENST00000544301 MUC12Q9UKN1 5478 aa5.98□□□□□ -1.45
VIM-209ENST00000544301 KRTAP19-3Q7Z4W3 81 aa5.96□□□□□ -1.46
VIM-209ENST00000544301 KRTAP4-3Q9BYR4 195 aa5.95□□□□□ -1.46
VIM-209ENST00000544301 MT1MQ8N339 61 aa5.93□□□□□ -1.46
VIM-209ENST00000544301 MT1GP13640 62 aa5.93□□□□□ -1.46
VIM-209ENST00000544301 LOC100996750A0A140TA64 210 aa5.88□□□□□ -1.47
VIM-209ENST00000544301 SPRR2FQ96RM1 72 aa5.81□□□□□ -1.48
VIM-209ENST00000544301 LCE5AQ5TCM9 118 aa5.79□□□□□ -1.48
VIM-209ENST00000544301 KRTAP4-6Q9BYQ5 205 aa5.75□□□□□ -1.49
VIM-209ENST00000544301 MACF1Q9UPN3 7388 aaKnown RBP5.74□□□□□ -1.49
VIM-209ENST00000544301 KRTAP9-2Q9BYQ4 174 aa5.68□□□□□ -1.5
VIM-209ENST00000544301 CRCT1Q9UGL9 99 aa5.68□□□□□ -1.5
VIM-209ENST00000544301 DSTQ03001 7570 aaKnown RBP5.59□□□□□ -1.52
VIM-209ENST00000544301 SYNE2Q8WXH0 6885 aaKnown RBP5.57□□□□□ -1.52
VIM-209ENST00000544301 MDN1Q9NU22 5596 aa5.54□□□□□ -1.52
VIM-209ENST00000544301 KRTAP5-9P26371 169 aa5.5□□□□□ -1.53
VIM-209ENST00000544301 LCE1AQ5T7P2 110 aa5.47□□□□□ -1.53
VIM-209ENST00000544301 LCE3BQ5TA77 95 aa5.35□□□□□ -1.55
VIM-209ENST00000544301 KRTAP9-6A0A140TA67 174 aa5.35□□□□□ -1.55
VIM-209ENST00000544301 SPRR2EP22531 72 aa5.35□□□□□ -1.55
VIM-209ENST00000544301 SPRR2BP35325 72 aa5.35□□□□□ -1.55
VIM-209ENST00000544301 SPRR2AP35326 72 aa5.35□□□□□ -1.55
VIM-209ENST00000544301 KRTAP6-1Q3LI64 71 aa5.34□□□□□ -1.55
VIM-209ENST00000544301 MT1AP04731 61 aa5.31□□□□□ -1.56
VIM-209ENST00000544301 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.3□□□□□ -1.56
VIM-209ENST00000544301 KRTAP4-12Q9BQ66 201 aa5.3□□□□□ -1.56
VIM-209ENST00000544301 KRTAP5-5Q701N2 237 aaPredicted RBP5.28□□□□□ -1.56
VIM-209ENST00000544301 KRTAP12-4P60329 112 aa5.26□□□□□ -1.57
VIM-209ENST00000544301 KRTAP4-9Q9BYQ8 210 aa5.2□□□□□ -1.58
VIM-209ENST00000544301 SPRR2DP22532 72 aa5.12□□□□□ -1.59
VIM-209ENST00000544301 KRTAP6-3Q3LI67 103 aa5.12□□□□□ -1.59
VIM-209ENST00000544301 LCE4AQ5TA78 99 aa5.08□□□□□ -1.6
VIM-209ENST00000544301 SYNE1Q8NF91 8797 aaKnown RBP5.06□□□□□ -1.6
VIM-209ENST00000544301 KRTAP9-9Q9BYP9 154 aa5.06□□□□□ -1.6
VIM-209ENST00000544301 KRTAP9-4Q9BYQ2 154 aa5.06□□□□□ -1.6
VIM-209ENST00000544301 LCE3DQ9BYE3 92 aa5.02□□□□□ -1.61
VIM-209ENST00000544301 KRTAP9-7A8MTY7 169 aa4.99□□□□□ -1.61
VIM-209ENST00000544301 LCE3EQ5T5B0 92 aa4.93□□□□□ -1.62
VIM-209ENST00000544301 LCE1DQ5T752 114 aa4.84□□□□□ -1.64
VIM-209ENST00000544301 KRTAP6-2Q3LI66 62 aa4.82□□□□□ -1.64
VIM-209ENST00000544301 MT3P25713 68 aa4.78□□□□□ -1.64
VIM-209ENST00000544301 NEBP20929 6669 aa4.76□□□□□ -1.65
VIM-209ENST00000544301 KRTAP5-4Q6L8H1 288 aa4.74□□□□□ -1.65
VIM-209ENST00000544301 PRM1P04553 51 aa4.62□□□□□ -1.67
VIM-209ENST00000544301 KRTAP4-11Q9BYQ6 195 aa4.54□□□□□ -1.68
VIM-209ENST00000544301 KRTAP4-2Q9BYR5 136 aa4.5□□□□□ -1.69
VIM-209ENST00000544301 MT4P47944 62 aa4.49□□□□□ -1.69
VIM-209ENST00000544301 OBSCNQ5VST9 7968 aa4.47□□□□□ -1.69
VIM-209ENST00000544301 KRTAP20-2Q3LI61 65 aa4.43□□□□□ -1.7
VIM-209ENST00000544301 KRTAP5-3Q6L8H2 238 aa4.4□□□□□ -1.7
VIM-209ENST00000544301 KRTAP5-2Q701N4 177 aa4.4□□□□□ -1.7
VIM-209ENST00000544301 HMCN1Q96RW7 5635 aa4.36□□□□□ -1.71
VIM-209ENST00000544301 KRTAP2-2Q9BYT5 123 aa4.3□□□□□ -1.72
VIM-209ENST00000544301 KRTAP20-1Q3LI63 56 aa4.27□□□□□ -1.73
VIM-209ENST00000544301 MUC5ACP98088 5654 aa4.02□□□□□ -1.77
VIM-209ENST00000544301 LCE1EQ5T753 118 aa3.97□□□□□ -1.77
VIM-209ENST00000544301 LCE1BQ5T7P3 118 aa3.85□□□□□ -1.79
VIM-209ENST00000544301 KRTAP5-10Q6L8G5 202 aa3.77□□□□□ -1.81
VIM-209ENST00000544301 KRTAP5-1Q6L8H4 278 aa3.75□□□□□ -1.81
VIM-209ENST00000544301 LCE1CQ5T751 118 aa3.74□□□□□ -1.81
VIM-209ENST00000544301 AHNAK2Q8IVF2 5795 aa3.55□□□□□ -1.84
VIM-209ENST00000544301 KRTAP5-8O75690 187 aa3.55□□□□□ -1.84
VIM-209ENST00000544301 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.53□□□□□ -1.84
VIM-209ENST00000544301 KRTAP5-7Q6L8G8 165 aa3.5□□□□□ -1.85
VIM-209ENST00000544301 GPR98Q8WXG9 6306 aa3.47□□□□□ -1.85
VIM-209ENST00000544301 KRTAP21-2Q3LI59 83 aa3.47□□□□□ -1.85
VIM-209ENST00000544301 KRTAP5-11Q6L8G4 156 aa3.23□□□□□ -1.89
VIM-209ENST00000544301 LCE1FQ5T754 118 aa3.22□□□□□ -1.89
VIM-209ENST00000544301 MUC5BQ9HC84 5762 aaPredicted RBP3.15□□□□□ -1.9
VIM-209ENST00000544301 KRTAP4-4Q9BYR3 166 aa3.13□□□□□ -1.91
VIM-209ENST00000544301 KRTAP21-1Q3LI58 79 aa2.9□□□□□ -1.94
VIM-209ENST00000544301 PHGR1C9JFL3 82 aa2.79□□□□□ -1.96
VIM-209ENST00000544301 MUC19Q7Z5P9 8384 aa2.77□□□□□ -1.97
VIM-209ENST00000544301 AHNAKQ09666 5890 aaKnown RBP2.76□□□□□ -1.97
VIM-209ENST00000544301 MUC16Q8WXI7 14507 aa1.86□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 166.1 ms