RNA–Protein interactions for RNA: ENST00000542001.5

VARS2-212, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VARS2, Length 4,064 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-212ENST00000542001 LCE2AQ5TA79 106 aaPredicted RBP5.4□□□□□ -1.54
VARS2-212ENST00000542001 SYNE2Q8WXH0 6885 aaKnown RBP5.38□□□□□ -1.55
VARS2-212ENST00000542001 MT1EP04732 61 aa5.38□□□□□ -1.55
VARS2-212ENST00000542001 KRTAP19-7Q3SYF9 63 aa5.35□□□□□ -1.55
VARS2-212ENST00000542001 MUC12Q9UKN1 5478 aa5.33□□□□□ -1.56
VARS2-212ENST00000542001 KRTAP12-4P60329 112 aa5.29□□□□□ -1.56
VARS2-212ENST00000542001 KRTAP9-6A8MVA2 160 aa5.28□□□□□ -1.56
VARS2-212ENST00000542001 KRTAP19-3Q7Z4W3 81 aa5.21□□□□□ -1.58
VARS2-212ENST00000542001 SPRR2EP22531 72 aa5.18□□□□□ -1.58
VARS2-212ENST00000542001 SPRR2BP35325 72 aa5.18□□□□□ -1.58
VARS2-212ENST00000542001 SPRR2AP35326 72 aa5.18□□□□□ -1.58
VARS2-212ENST00000542001 MT1MQ8N339 61 aa5.13□□□□□ -1.59
VARS2-212ENST00000542001 SSPOA2VEC9 5147 aa5.12□□□□□ -1.59
VARS2-212ENST00000542001 KRTAP19-6Q3LI70 58 aa5.11□□□□□ -1.59
VARS2-212ENST00000542001 KRTAP19-4Q3LI73 84 aa5.06□□□□□ -1.6
VARS2-212ENST00000542001 KRTAP4-9Q9BYQ8 210 aa5.06□□□□□ -1.6
VARS2-212ENST00000542001 SPRR2DP22532 72 aa4.93□□□□□ -1.62
VARS2-212ENST00000542001 MACF1Q9UPN3 7388 aaKnown RBP4.93□□□□□ -1.62
VARS2-212ENST00000542001 LCE3DQ9BYE3 92 aa4.93□□□□□ -1.62
VARS2-212ENST00000542001 KRTAP2-3P0C7H8 128 aa4.89□□□□□ -1.63
VARS2-212ENST00000542001 KRTAP2-4Q9BYR9 128 aa4.89□□□□□ -1.63
VARS2-212ENST00000542001 KRTAP2-1Q9BYU5 128 aa4.89□□□□□ -1.63
VARS2-212ENST00000542001 LCE2DQ5TA82 110 aaPredicted RBP4.89□□□□□ -1.63
VARS2-212ENST00000542001 KRTAP9-2Q9BYQ4 174 aa4.88□□□□□ -1.63
VARS2-212ENST00000542001 LCE3EQ5T5B0 92 aa4.81□□□□□ -1.64
VARS2-212ENST00000542001 KRTAP6-1Q3LI64 71 aa4.69□□□□□ -1.66
VARS2-212ENST00000542001 LCE5AQ5TCM9 118 aa4.66□□□□□ -1.66
VARS2-212ENST00000542001 PRM1P04553 51 aa4.65□□□□□ -1.67
VARS2-212ENST00000542001 MDN1Q9NU22 5596 aa4.64□□□□□ -1.67
VARS2-212ENST00000542001 MT4P47944 62 aa4.63□□□□□ -1.67
VARS2-212ENST00000542001 MT1AP04731 61 aa4.56□□□□□ -1.68
VARS2-212ENST00000542001 LCE1AQ5T7P2 110 aa4.54□□□□□ -1.68
VARS2-212ENST00000542001 MT3P25713 68 aa4.47□□□□□ -1.69
VARS2-212ENST00000542001 KRTAP9-7A8MTY7 169 aa4.46□□□□□ -1.7
VARS2-212ENST00000542001 KRTAP6-2Q3LI66 62 aa4.42□□□□□ -1.7
VARS2-212ENST00000542001 LCE1DQ5T752 114 aa4.33□□□□□ -1.72
VARS2-212ENST00000542001 LCE1BQ5T7P3 118 aa4.3□□□□□ -1.72
VARS2-212ENST00000542001 KRTAP9-6A0A140TA67 174 aa4.28□□□□□ -1.72
VARS2-212ENST00000542001 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.27□□□□□ -1.73
VARS2-212ENST00000542001 KRTAP9-4Q9BYQ2 154 aa4.24□□□□□ -1.73
VARS2-212ENST00000542001 MUC19Q7Z5P9 8384 aa4.21□□□□□ -1.74
VARS2-212ENST00000542001 KRTAP6-3Q3LI67 103 aa4.12□□□□□ -1.75
VARS2-212ENST00000542001 KRTAP5-9P26371 169 aa4.04□□□□□ -1.76
VARS2-212ENST00000542001 KRTAP4-6Q9BYQ5 205 aa4□□□□□ -1.77
VARS2-212ENST00000542001 NEBP20929 6669 aa3.96□□□□□ -1.78
VARS2-212ENST00000542001 KRTAP5-5Q701N2 237 aaPredicted RBP3.86□□□□□ -1.79
VARS2-212ENST00000542001 KRTAP2-2Q9BYT5 123 aa3.82□□□□□ -1.8
VARS2-212ENST00000542001 KRTAP20-1Q3LI63 56 aa3.78□□□□□ -1.8
VARS2-212ENST00000542001 MUC5ACP98088 5654 aa3.75□□□□□ -1.81
VARS2-212ENST00000542001 LCE4AQ5TA78 99 aa3.73□□□□□ -1.81
VARS2-212ENST00000542001 KRTAP20-2Q3LI61 65 aa3.68□□□□□ -1.82
VARS2-212ENST00000542001 LCE1EQ5T753 118 aa3.62□□□□□ -1.83
VARS2-212ENST00000542001 KRTAP4-11Q9BYQ6 195 aa3.6□□□□□ -1.83
VARS2-212ENST00000542001 HMCN1Q96RW7 5635 aa3.56□□□□□ -1.84
VARS2-212ENST00000542001 GPR98Q8WXG9 6306 aa3.42□□□□□ -1.86
VARS2-212ENST00000542001 KRTAP4-4Q9BYR3 166 aa3.41□□□□□ -1.86
VARS2-212ENST00000542001 KRTAP5-4Q6L8H1 288 aa3.3□□□□□ -1.88
VARS2-212ENST00000542001 LCE1CQ5T751 118 aa3.3□□□□□ -1.88
VARS2-212ENST00000542001 LCE1FQ5T754 118 aa3.3□□□□□ -1.88
VARS2-212ENST00000542001 KRTAP4-12Q9BQ66 201 aa3.29□□□□□ -1.88
VARS2-212ENST00000542001 KRTAP4-2Q9BYR5 136 aa3.29□□□□□ -1.88
VARS2-212ENST00000542001 AHNAK2Q8IVF2 5795 aa3.07□□□□□ -1.92
VARS2-212ENST00000542001 KRTAP9-9Q9BYP9 154 aa3.03□□□□□ -1.93
VARS2-212ENST00000542001 KRTAP5-3Q6L8H2 238 aa3.01□□□□□ -1.93
VARS2-212ENST00000542001 KRTAP5-2Q701N4 177 aa3□□□□□ -1.93
VARS2-212ENST00000542001 MUC5BQ9HC84 5762 aaPredicted RBP2.99□□□□□ -1.93
VARS2-212ENST00000542001 KRTAP5-10Q6L8G5 202 aa2.96□□□□□ -1.94
VARS2-212ENST00000542001 KRTAP5-8O75690 187 aa2.84□□□□□ -1.96
VARS2-212ENST00000542001 KRTAP5-1Q6L8H4 278 aa2.73□□□□□ -1.97
VARS2-212ENST00000542001 KRTAP21-2Q3LI59 83 aa2.64□□□□□ -1.99
VARS2-212ENST00000542001 AHNAKQ09666 5890 aaKnown RBP2.59□□□□□ -1.99
VARS2-212ENST00000542001 KRTAP5-11Q6L8G4 156 aa2.41□□□□□ -2.02
VARS2-212ENST00000542001 KRTAP21-1Q3LI58 79 aa2.29□□□□□ -2.04
VARS2-212ENST00000542001 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.28□□□□□ -2.04
VARS2-212ENST00000542001 KRTAP5-7Q6L8G8 165 aa2.16□□□□□ -2.06
VARS2-212ENST00000542001 PHGR1C9JFL3 82 aa2.1□□□□□ -2.07
VARS2-212ENST00000542001 MUC16Q8WXI7 14507 aa1.43□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 67 ms