RNA–Protein interactions for RNA: ENST00000541615.5

SNHG1-218, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5 BASIC

Gene SNHG1, Length 748 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-218ENST00000541615 KRTAP2-1Q9BYU5 128 aa1.94□□□□□ -2.1
SNHG1-218ENST00000541615 UBR4Q5T4S7 5183 aa1.93□□□□□ -2.1
SNHG1-218ENST00000541615 TNXBP22105 4242 aa1.93□□□□□ -2.1
SNHG1-218ENST00000541615 KRTAP4-3Q9BYR4 195 aa1.92□□□□□ -2.1
SNHG1-218ENST00000541615 LCE3CQ5T5A8 94 aa1.89□□□□□ -2.11
SNHG1-218ENST00000541615 RNF213Q63HN8 5207 aa1.85□□□□□ -2.11
SNHG1-218ENST00000541615 HMCN2Q8NDA2 5059 aa1.84□□□□□ -2.11
SNHG1-218ENST00000541615 MT1HL1P0DM35 61 aa1.83□□□□□ -2.12
SNHG1-218ENST00000541615 LRP2P98164 4655 aa1.83□□□□□ -2.12
SNHG1-218ENST00000541615 KRTAP5-2Q701N4 177 aa1.83□□□□□ -2.12
SNHG1-218ENST00000541615 SPRR2GQ9BYE4 73 aa1.83□□□□□ -2.12
SNHG1-218ENST00000541615 LPAP08519 4548 aa1.8□□□□□ -2.12
SNHG1-218ENST00000541615 CRCT1Q9UGL9 99 aa1.8□□□□□ -2.12
SNHG1-218ENST00000541615 KRTAP12-4P60329 112 aa1.79□□□□□ -2.12
SNHG1-218ENST00000541615 KRTAP6-3Q3LI67 103 aa1.77□□□□□ -2.13
SNHG1-218ENST00000541615 MUC17Q685J3 4493 aa1.74□□□□□ -2.13
SNHG1-218ENST00000541615 FAT4Q6V0I7 4981 aa1.73□□□□□ -2.13
SNHG1-218ENST00000541615 MUC2Q02817 5179 aa1.71□□□□□ -2.13
SNHG1-218ENST00000541615 LCE3EQ5T5B0 92 aa1.71□□□□□ -2.14
SNHG1-218ENST00000541615 KRTAP19-5Q3LI72 72 aa1.7□□□□□ -2.14
SNHG1-218ENST00000541615 KRTAP19-2Q3LHN2 52 aa1.68□□□□□ -2.14
SNHG1-218ENST00000541615 KRTAP19-8Q3LI54 63 aa1.68□□□□□ -2.14
SNHG1-218ENST00000541615 KRTAP5-5Q701N2 237 aaPredicted RBP1.68□□□□□ -2.14
SNHG1-218ENST00000541615 KRTAP4-1Q9BYQ7 146 aa1.68□□□□□ -2.14
SNHG1-218ENST00000541615 FSIP2Q5CZC0 6907 aa1.67□□□□□ -2.14
SNHG1-218ENST00000541615 MT1AP04731 61 aa1.62□□□□□ -2.15
SNHG1-218ENST00000541615 MT1XP80297 61 aa1.62□□□□□ -2.15
SNHG1-218ENST00000541615 LCE1CQ5T751 118 aa1.61□□□□□ -2.15
SNHG1-218ENST00000541615 LCE1BQ5T7P3 118 aa1.61□□□□□ -2.15
SNHG1-218ENST00000541615 PRM1P04553 51 aa1.59□□□□□ -2.15
SNHG1-218ENST00000541615 MT1EP04732 61 aa1.59□□□□□ -2.15
SNHG1-218ENST00000541615 MT1HP80294 61 aa1.56□□□□□ -2.16
SNHG1-218ENST00000541615 MT1LQ93083 61 aa1.55□□□□□ -2.16
SNHG1-218ENST00000541615 KRTAP5-8O75690 187 aa1.54□□□□□ -2.16
SNHG1-218ENST00000541615 LCE3DQ9BYE3 92 aa1.52□□□□□ -2.17
SNHG1-218ENST00000541615 MT1BP07438 61 aa1.51□□□□□ -2.17
SNHG1-218ENST00000541615 KRTAP20-1Q3LI63 56 aa1.49□□□□□ -2.17
SNHG1-218ENST00000541615 FCGBPQ9Y6R7 5405 aaPredicted RBP1.49□□□□□ -2.17
SNHG1-218ENST00000541615 SSPOA2VEC9 5147 aa1.48□□□□□ -2.17
SNHG1-218ENST00000541615 MT2AP02795 61 aa1.48□□□□□ -2.17
SNHG1-218ENST00000541615 MACF1Q9UPN3 7388 aaKnown RBP1.47□□□□□ -2.17
SNHG1-218ENST00000541615 MT1FP04733 61 aa1.47□□□□□ -2.17
SNHG1-218ENST00000541615 KRTAP19-6Q3LI70 58 aa1.46□□□□□ -2.18
SNHG1-218ENST00000541615 HMCN1Q96RW7 5635 aa1.44□□□□□ -2.18
SNHG1-218ENST00000541615 USH2AO75445 5202 aa1.43□□□□□ -2.18
SNHG1-218ENST00000541615 SPRR2AP35326 72 aa1.43□□□□□ -2.18
SNHG1-218ENST00000541615 KRTAP19-7Q3SYF9 63 aa1.43□□□□□ -2.18
SNHG1-218ENST00000541615 SPRR2FQ96RM1 72 aa1.43□□□□□ -2.18
SNHG1-218ENST00000541615 SYNE2Q8WXH0 6885 aaKnown RBP1.42□□□□□ -2.18
SNHG1-218ENST00000541615 SPRR2BP35325 72 aa1.41□□□□□ -2.18
SNHG1-218ENST00000541615 KRTAP6-2Q3LI66 62 aa1.39□□□□□ -2.19
SNHG1-218ENST00000541615 MUC19Q7Z5P9 8384 aa1.38□□□□□ -2.19
SNHG1-218ENST00000541615 SPRR2DP22532 72 aa1.36□□□□□ -2.19
SNHG1-218ENST00000541615 MUC12Q9UKN1 5478 aa1.35□□□□□ -2.19
SNHG1-218ENST00000541615 MT1GP13640 62 aa1.33□□□□□ -2.2
SNHG1-218ENST00000541615 SPRR2EP22531 72 aa1.33□□□□□ -2.2
SNHG1-218ENST00000541615 SYNE1Q8NF91 8797 aaKnown RBP1.31□□□□□ -2.2
SNHG1-218ENST00000541615 KRTAP5-7Q6L8G8 165 aa1.31□□□□□ -2.2
SNHG1-218ENST00000541615 NEBP20929 6669 aa1.3□□□□□ -2.2
SNHG1-218ENST00000541615 KMT2DO14686 5537 aa1.3□□□□□ -2.2
SNHG1-218ENST00000541615 MDN1Q9NU22 5596 aa1.3□□□□□ -2.2
SNHG1-218ENST00000541615 MT1MQ8N339 61 aa1.29□□□□□ -2.2
SNHG1-218ENST00000541615 KRTAP19-3Q7Z4W3 81 aa1.25□□□□□ -2.21
SNHG1-218ENST00000541615 DSTQ03001 7570 aaKnown RBP1.19□□□□□ -2.22
SNHG1-218ENST00000541615 KRTAP6-1Q3LI64 71 aa1.18□□□□□ -2.22
SNHG1-218ENST00000541615 GPR98Q8WXG9 6306 aa1.15□□□□□ -2.22
SNHG1-218ENST00000541615 KRTAP21-2Q3LI59 83 aa1.15□□□□□ -2.23
SNHG1-218ENST00000541615 KRTAP5-10Q6L8G5 202 aa1.13□□□□□ -2.23
SNHG1-218ENST00000541615 KRTAP21-1Q3LI58 79 aa1.12□□□□□ -2.23
SNHG1-218ENST00000541615 MT4P47944 62 aa1.1□□□□□ -2.23
SNHG1-218ENST00000541615 AHNAK2Q8IVF2 5795 aa1.07□□□□□ -2.24
SNHG1-218ENST00000541615 KRTAP20-2Q3LI61 65 aa0.99□□□□□ -2.25
SNHG1-218ENST00000541615 MUC5BQ9HC84 5762 aaPredicted RBP0.92□□□□□ -2.26
SNHG1-218ENST00000541615 AHNAKQ09666 5890 aaKnown RBP0.91□□□□□ -2.26
SNHG1-218ENST00000541615 MUC5ACP98088 5654 aa0.9□□□□□ -2.27
SNHG1-218ENST00000541615 PHGR1C9JFL3 82 aa0.69□□□□□ -2.3
SNHG1-218ENST00000541615 MUC16Q8WXI7 14507 aa0.56□□□□□ -2.32
Retrieved 77 of 20,778 RNA–protein pairs in 19.1 ms