RNA–Protein interactions for RNA: ENST00000539208.5

GNE-204, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

TSL 2 BASIC

Gene GNE, Length 2,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-204ENST00000539208 KRTAP2-4Q9BYR9 128 aa5.99□□□□□ -1.45
GNE-204ENST00000539208 KRTAP2-1Q9BYU5 128 aa5.99□□□□□ -1.45
GNE-204ENST00000539208 KRTAP19-3Q7Z4W3 81 aa5.97□□□□□ -1.45
GNE-204ENST00000539208 MT1GP13640 62 aa5.96□□□□□ -1.46
GNE-204ENST00000539208 MT1MQ8N339 61 aa5.92□□□□□ -1.46
GNE-204ENST00000539208 KRTAP4-3Q9BYR4 195 aa5.86□□□□□ -1.47
GNE-204ENST00000539208 LCE5AQ5TCM9 118 aa5.81□□□□□ -1.48
GNE-204ENST00000539208 SPRR2FQ96RM1 72 aa5.8□□□□□ -1.48
GNE-204ENST00000539208 MUC12Q9UKN1 5478 aa5.79□□□□□ -1.48
GNE-204ENST00000539208 KRTAP9-2Q9BYQ4 174 aa5.79□□□□□ -1.48
GNE-204ENST00000539208 LOC100996750A0A140TA64 210 aa5.78□□□□□ -1.48
GNE-204ENST00000539208 MACF1Q9UPN3 7388 aaKnown RBP5.6□□□□□ -1.51
GNE-204ENST00000539208 CRCT1Q9UGL9 99 aa5.6□□□□□ -1.51
GNE-204ENST00000539208 KRTAP5-9P26371 169 aa5.58□□□□□ -1.52
GNE-204ENST00000539208 LCE1AQ5T7P2 110 aa5.5□□□□□ -1.53
GNE-204ENST00000539208 SYNE2Q8WXH0 6885 aaKnown RBP5.44□□□□□ -1.54
GNE-204ENST00000539208 DSTQ03001 7570 aaKnown RBP5.38□□□□□ -1.55
GNE-204ENST00000539208 MDN1Q9NU22 5596 aa5.36□□□□□ -1.55
GNE-204ENST00000539208 SPRR2EP22531 72 aa5.35□□□□□ -1.55
GNE-204ENST00000539208 SPRR2BP35325 72 aa5.35□□□□□ -1.55
GNE-204ENST00000539208 SPRR2AP35326 72 aa5.35□□□□□ -1.55
GNE-204ENST00000539208 MT1AP04731 61 aa5.32□□□□□ -1.56
GNE-204ENST00000539208 KRTAP5-5Q701N2 237 aaPredicted RBP5.3□□□□□ -1.56
GNE-204ENST00000539208 KRTAP6-1Q3LI64 71 aa5.29□□□□□ -1.56
GNE-204ENST00000539208 LCE3BQ5TA77 95 aa5.26□□□□□ -1.57
GNE-204ENST00000539208 KRTAP9-6A0A140TA67 174 aa5.22□□□□□ -1.57
GNE-204ENST00000539208 KRTAP6-3Q3LI67 103 aa5.21□□□□□ -1.58
GNE-204ENST00000539208 KRTAP12-4P60329 112 aa5.18□□□□□ -1.58
GNE-204ENST00000539208 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.18□□□□□ -1.58
GNE-204ENST00000539208 SPRR2DP22532 72 aa5.14□□□□□ -1.59
GNE-204ENST00000539208 KRTAP4-9Q9BYQ8 210 aa5.08□□□□□ -1.6
GNE-204ENST00000539208 KRTAP9-4Q9BYQ2 154 aa5.02□□□□□ -1.61
GNE-204ENST00000539208 LCE3DQ9BYE3 92 aa4.98□□□□□ -1.61
GNE-204ENST00000539208 SYNE1Q8NF91 8797 aaKnown RBP4.93□□□□□ -1.62
GNE-204ENST00000539208 LCE3EQ5T5B0 92 aa4.91□□□□□ -1.62
GNE-204ENST00000539208 KRTAP9-7A8MTY7 169 aa4.82□□□□□ -1.64
GNE-204ENST00000539208 MT3P25713 68 aa4.8□□□□□ -1.64
GNE-204ENST00000539208 KRTAP5-4Q6L8H1 288 aa4.8□□□□□ -1.64
GNE-204ENST00000539208 KRTAP6-2Q3LI66 62 aa4.78□□□□□ -1.64
GNE-204ENST00000539208 NEBP20929 6669 aa4.77□□□□□ -1.65
GNE-204ENST00000539208 LCE4AQ5TA78 99 aa4.56□□□□□ -1.68
GNE-204ENST00000539208 PRM1P04553 51 aa4.53□□□□□ -1.68
GNE-204ENST00000539208 KRTAP4-6Q9BYQ5 205 aa4.51□□□□□ -1.69
GNE-204ENST00000539208 MT4P47944 62 aa4.46□□□□□ -1.7
GNE-204ENST00000539208 KRTAP20-2Q3LI61 65 aa4.46□□□□□ -1.7
GNE-204ENST00000539208 KRTAP5-2Q701N4 177 aa4.44□□□□□ -1.7
GNE-204ENST00000539208 KRTAP2-2Q9BYT5 123 aa4.38□□□□□ -1.71
GNE-204ENST00000539208 KRTAP20-1Q3LI63 56 aa4.31□□□□□ -1.72
GNE-204ENST00000539208 LCE1DQ5T752 114 aa4.3□□□□□ -1.72
GNE-204ENST00000539208 KRTAP5-3Q6L8H2 238 aa4.28□□□□□ -1.72
GNE-204ENST00000539208 OBSCNQ5VST9 7968 aa4.27□□□□□ -1.73
GNE-204ENST00000539208 HMCN1Q96RW7 5635 aa4.26□□□□□ -1.73
GNE-204ENST00000539208 LCE1EQ5T753 118 aa4.04□□□□□ -1.76
GNE-204ENST00000539208 MUC5ACP98088 5654 aa3.89□□□□□ -1.79
GNE-204ENST00000539208 KRTAP5-10Q6L8G5 202 aa3.81□□□□□ -1.8
GNE-204ENST00000539208 LCE1BQ5T7P3 118 aa3.8□□□□□ -1.8
GNE-204ENST00000539208 LCE1CQ5T751 118 aa3.78□□□□□ -1.8
GNE-204ENST00000539208 KRTAP5-1Q6L8H4 278 aa3.77□□□□□ -1.81
GNE-204ENST00000539208 KRTAP4-2Q9BYR5 136 aa3.76□□□□□ -1.81
GNE-204ENST00000539208 KRTAP4-11Q9BYQ6 195 aa3.73□□□□□ -1.81
GNE-204ENST00000539208 AHNAK2Q8IVF2 5795 aa3.6□□□□□ -1.83
GNE-204ENST00000539208 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.59□□□□□ -1.84
GNE-204ENST00000539208 KRTAP5-8O75690 187 aa3.58□□□□□ -1.84
GNE-204ENST00000539208 KRTAP5-7Q6L8G8 165 aa3.58□□□□□ -1.84
GNE-204ENST00000539208 KRTAP21-2Q3LI59 83 aa3.46□□□□□ -1.85
GNE-204ENST00000539208 KRTAP5-11Q6L8G4 156 aa3.27□□□□□ -1.89
GNE-204ENST00000539208 KRTAP9-9Q9BYP9 154 aa3.23□□□□□ -1.89
GNE-204ENST00000539208 KRTAP4-12Q9BQ66 201 aa3.18□□□□□ -1.9
GNE-204ENST00000539208 GPR98Q8WXG9 6306 aa3.12□□□□□ -1.91
GNE-204ENST00000539208 MUC5BQ9HC84 5762 aaPredicted RBP3.04□□□□□ -1.92
GNE-204ENST00000539208 KRTAP4-4Q9BYR3 166 aa3.04□□□□□ -1.92
GNE-204ENST00000539208 LCE1FQ5T754 118 aa2.89□□□□□ -1.95
GNE-204ENST00000539208 KRTAP21-1Q3LI58 79 aa2.88□□□□□ -1.95
GNE-204ENST00000539208 PHGR1C9JFL3 82 aa2.81□□□□□ -1.96
GNE-204ENST00000539208 MUC19Q7Z5P9 8384 aa2.62□□□□□ -1.99
GNE-204ENST00000539208 AHNAKQ09666 5890 aaKnown RBP2.58□□□□□ -2
GNE-204ENST00000539208 MUC16Q8WXI7 14507 aa1.86□□□□□ -2.11
Retrieved 77 of 20,778 RNA–protein pairs in 120.1 ms