RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 RYR3Q15413 4870 aa2.67□□□□□ -1.98
USP28-207ENST00000538475 LPAP08519 4548 aa2.63□□□□□ -1.99
USP28-207ENST00000538475 KRTAP12-3P60328 96 aa2.61□□□□□ -1.99
USP28-207ENST00000538475 BIRC6Q9NR09 4857 aa2.6□□□□□ -1.99
USP28-207ENST00000538475 KRTAP19-8Q3LI54 63 aa2.59□□□□□ -1.99
USP28-207ENST00000538475 EPPK1P58107 5090 aaKnown RBP2.58□□□□□ -2
USP28-207ENST00000538475 KRTAP10-10P60014 251 aa2.58□□□□□ -2
USP28-207ENST00000538475 HERC2O95714 4834 aa2.49□□□□□ -2.01
USP28-207ENST00000538475 KRTAP5-5Q701N2 237 aaPredicted RBP2.48□□□□□ -2.01
USP28-207ENST00000538475 KRTAP2-3P0C7H8 128 aa2.47□□□□□ -2.01
USP28-207ENST00000538475 MT1XP80297 61 aa2.47□□□□□ -2.01
USP28-207ENST00000538475 KRTAP2-4Q9BYR9 128 aa2.47□□□□□ -2.01
USP28-207ENST00000538475 KRTAP2-1Q9BYU5 128 aa2.47□□□□□ -2.01
USP28-207ENST00000538475 KIAA1109Q2LD37 5005 aa2.46□□□□□ -2.02
USP28-207ENST00000538475 MT2AP02795 61 aa2.44□□□□□ -2.02
USP28-207ENST00000538475 MT1BP07438 61 aa2.43□□□□□ -2.02
USP28-207ENST00000538475 PCLOQ9Y6V0 5065 aa2.41□□□□□ -2.02
USP28-207ENST00000538475 M0R2T5 61 aa2.41□□□□□ -2.02
USP28-207ENST00000538475 MT1FP04733 61 aa2.41□□□□□ -2.02
USP28-207ENST00000538475 ABCA13Q86UQ4 5058 aa2.39□□□□□ -2.03
USP28-207ENST00000538475 MT1HP80294 61 aa2.39□□□□□ -2.03
USP28-207ENST00000538475 LCE1CQ5T751 118 aa2.38□□□□□ -2.03
USP28-207ENST00000538475 LCE1BQ5T7P3 118 aa2.38□□□□□ -2.03
USP28-207ENST00000538475 LCE3DQ9BYE3 92 aa2.35□□□□□ -2.03
USP28-207ENST00000538475 KRTAP19-5Q3LI72 72 aa2.34□□□□□ -2.03
USP28-207ENST00000538475 HMCN2Q8NDA2 5059 aa2.33□□□□□ -2.04
USP28-207ENST00000538475 KRTAP5-8O75690 187 aa2.27□□□□□ -2.05
USP28-207ENST00000538475 MT1EP04732 61 aa2.22□□□□□ -2.05
USP28-207ENST00000538475 KRTAP19-7Q3SYF9 63 aa2.2□□□□□ -2.06
USP28-207ENST00000538475 MT1LQ93083 61 aa2.2□□□□□ -2.06
USP28-207ENST00000538475 UBR4Q5T4S7 5183 aa2.17□□□□□ -2.06
USP28-207ENST00000538475 KRTAP12-4P60329 112 aa2.16□□□□□ -2.06
USP28-207ENST00000538475 MUC2Q02817 5179 aa2.15□□□□□ -2.07
USP28-207ENST00000538475 MT1AP04731 61 aa2.11□□□□□ -2.07
USP28-207ENST00000538475 FAT4Q6V0I7 4981 aa2.07□□□□□ -2.08
USP28-207ENST00000538475 RNF213Q63HN8 5207 aa2.05□□□□□ -2.08
USP28-207ENST00000538475 MT1GP13640 62 aa2.04□□□□□ -2.08
USP28-207ENST00000538475 MT1MQ8N339 61 aa1.99□□□□□ -2.09
USP28-207ENST00000538475 KRTAP19-3Q7Z4W3 81 aa1.97□□□□□ -2.09
USP28-207ENST00000538475 CRCT1Q9UGL9 99 aa1.96□□□□□ -2.1
USP28-207ENST00000538475 KRTAP5-7Q6L8G8 165 aa1.95□□□□□ -2.1
USP28-207ENST00000538475 KRTAP19-6Q3LI70 58 aa1.92□□□□□ -2.1
USP28-207ENST00000538475 PRM1P04553 51 aa1.91□□□□□ -2.1
USP28-207ENST00000538475 MUC19Q7Z5P9 8384 aa1.9□□□□□ -2.11
USP28-207ENST00000538475 KRTAP6-3Q3LI67 103 aa1.89□□□□□ -2.11
USP28-207ENST00000538475 SPRR2FQ96RM1 72 aa1.88□□□□□ -2.11
USP28-207ENST00000538475 KMT2DO14686 5537 aa1.82□□□□□ -2.12
USP28-207ENST00000538475 SSPOA2VEC9 5147 aa1.81□□□□□ -2.12
USP28-207ENST00000538475 SPRR2AP35326 72 aa1.81□□□□□ -2.12
USP28-207ENST00000538475 KRTAP6-1Q3LI64 71 aa1.8□□□□□ -2.12
USP28-207ENST00000538475 USH2AO75445 5202 aa1.79□□□□□ -2.12
USP28-207ENST00000538475 SYNE1Q8NF91 8797 aaKnown RBP1.78□□□□□ -2.12
USP28-207ENST00000538475 KRTAP6-2Q3LI66 62 aa1.78□□□□□ -2.12
USP28-207ENST00000538475 FSIP2Q5CZC0 6907 aa1.74□□□□□ -2.13
USP28-207ENST00000538475 SPRR2BP35325 72 aa1.73□□□□□ -2.13
USP28-207ENST00000538475 SPRR2EP22531 72 aa1.72□□□□□ -2.13
USP28-207ENST00000538475 KRTAP21-2Q3LI59 83 aa1.71□□□□□ -2.14
USP28-207ENST00000538475 FCGBPQ9Y6R7 5405 aaPredicted RBP1.68□□□□□ -2.14
USP28-207ENST00000538475 SPRR2DP22532 72 aa1.64□□□□□ -2.15
USP28-207ENST00000538475 KRTAP20-1Q3LI63 56 aa1.61□□□□□ -2.15
USP28-207ENST00000538475 MUC12Q9UKN1 5478 aa1.56□□□□□ -2.16
USP28-207ENST00000538475 MACF1Q9UPN3 7388 aaKnown RBP1.53□□□□□ -2.17
USP28-207ENST00000538475 SYNE2Q8WXH0 6885 aaKnown RBP1.49□□□□□ -2.17
USP28-207ENST00000538475 HMCN1Q96RW7 5635 aa1.48□□□□□ -2.17
USP28-207ENST00000538475 DSTQ03001 7570 aaKnown RBP1.45□□□□□ -2.18
USP28-207ENST00000538475 NEBP20929 6669 aa1.43□□□□□ -2.18
USP28-207ENST00000538475 MDN1Q9NU22 5596 aa1.42□□□□□ -2.18
USP28-207ENST00000538475 KRTAP5-10Q6L8G5 202 aa1.39□□□□□ -2.19
USP28-207ENST00000538475 KRTAP21-1Q3LI58 79 aa1.32□□□□□ -2.2
USP28-207ENST00000538475 MUC5ACP98088 5654 aa1.29□□□□□ -2.2
USP28-207ENST00000538475 KRTAP20-2Q3LI61 65 aa1.29□□□□□ -2.2
USP28-207ENST00000538475 MT4P47944 62 aa1.26□□□□□ -2.21
USP28-207ENST00000538475 GPR98Q8WXG9 6306 aa1.15□□□□□ -2.22
USP28-207ENST00000538475 AHNAK2Q8IVF2 5795 aa1.14□□□□□ -2.23
USP28-207ENST00000538475 MUC5BQ9HC84 5762 aaPredicted RBP1.06□□□□□ -2.24
USP28-207ENST00000538475 PHGR1C9JFL3 82 aa0.9□□□□□ -2.27
USP28-207ENST00000538475 AHNAKQ09666 5890 aaKnown RBP0.89□□□□□ -2.27
USP28-207ENST00000538475 MUC16Q8WXI7 14507 aa0.83□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 105 ms