RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 LRP1BQ9NZR2 4599 aa1.82□□□□□ -2.12
CD44-236ENST00000533222 KRTAP21-3Q3LHN1 58 aa1.79□□□□□ -2.12
CD44-236ENST00000533222 MUC19Q7Z5P9 8384 aa1.79□□□□□ -2.12
CD44-236ENST00000533222 KRTAP19-5Q3LI72 72 aa1.76□□□□□ -2.13
CD44-236ENST00000533222 J3QKU1 62 aa1.75□□□□□ -2.13
CD44-236ENST00000533222 FAT1Q14517 4588 aa1.73□□□□□ -2.13
CD44-236ENST00000533222 HERC1Q15751 4861 aa1.72□□□□□ -2.13
CD44-236ENST00000533222 MUC17Q685J3 4493 aa1.7□□□□□ -2.14
CD44-236ENST00000533222 MT1AP04731 61 aa1.69□□□□□ -2.14
CD44-236ENST00000533222 KRTAP19-2Q3LHN2 52 aa1.69□□□□□ -2.14
CD44-236ENST00000533222 KRTAP19-8Q3LI54 63 aa1.67□□□□□ -2.14
CD44-236ENST00000533222 MT1EP04732 61 aa1.61□□□□□ -2.15
CD44-236ENST00000533222 PRM1P04553 51 aa1.59□□□□□ -2.15
CD44-236ENST00000533222 MT1XP80297 61 aa1.57□□□□□ -2.16
CD44-236ENST00000533222 KRTAP21-2Q3LI59 83 aa1.56□□□□□ -2.16
CD44-236ENST00000533222 DNHD1Q96M86 4753 aa1.56□□□□□ -2.16
CD44-236ENST00000533222 HMCN1Q96RW7 5635 aa1.55□□□□□ -2.16
CD44-236ENST00000533222 MT1LQ93083 61 aa1.55□□□□□ -2.16
CD44-236ENST00000533222 MT1HL1P0DM35 61 aa1.53□□□□□ -2.16
CD44-236ENST00000533222 SPRR2AP35326 72 aa1.5□□□□□ -2.17
CD44-236ENST00000533222 LRP2P98164 4655 aa1.5□□□□□ -2.17
CD44-236ENST00000533222 SPRR2BP35325 72 aa1.49□□□□□ -2.17
CD44-236ENST00000533222 MT1BP07438 61 aa1.46□□□□□ -2.18
CD44-236ENST00000533222 SPRR2FQ96RM1 72 aa1.46□□□□□ -2.18
CD44-236ENST00000533222 KRTAP4-1Q9BYQ7 146 aa1.44□□□□□ -2.18
CD44-236ENST00000533222 SPRR2DP22532 72 aa1.42□□□□□ -2.18
CD44-236ENST00000533222 MT1HP80294 61 aa1.42□□□□□ -2.18
CD44-236ENST00000533222 HMCN2Q8NDA2 5059 aa1.42□□□□□ -2.18
CD44-236ENST00000533222 KRTAP19-7Q3SYF9 63 aa1.41□□□□□ -2.18
CD44-236ENST00000533222 KRTAP6-2Q3LI66 62 aa1.39□□□□□ -2.19
CD44-236ENST00000533222 CRCT1Q9UGL9 99 aa1.39□□□□□ -2.19
CD44-236ENST00000533222 HYDINQ4G0P3 5121 aa1.38□□□□□ -2.19
CD44-236ENST00000533222 SPRR2EP22531 72 aa1.38□□□□□ -2.19
CD44-236ENST00000533222 RYR3Q15413 4870 aa1.37□□□□□ -2.19
CD44-236ENST00000533222 SYNE1Q8NF91 8797 aaKnown RBP1.36□□□□□ -2.19
CD44-236ENST00000533222 KMT2CQ8NEZ4 4911 aaKnown RBP1.35□□□□□ -2.19
CD44-236ENST00000533222 MUC2Q02817 5179 aa1.34□□□□□ -2.19
CD44-236ENST00000533222 MT2AP02795 61 aa1.34□□□□□ -2.19
CD44-236ENST00000533222 MT1FP04733 61 aa1.31□□□□□ -2.2
CD44-236ENST00000533222 RYR1P21817 5038 aa1.3□□□□□ -2.2
CD44-236ENST00000533222 RYR2Q92736 4967 aa1.29□□□□□ -2.2
CD44-236ENST00000533222 MT1GP13640 62 aa1.29□□□□□ -2.2
CD44-236ENST00000533222 HERC2O95714 4834 aa1.29□□□□□ -2.2
CD44-236ENST00000533222 BIRC6Q9NR09 4857 aa1.28□□□□□ -2.2
CD44-236ENST00000533222 MT1MQ8N339 61 aa1.26□□□□□ -2.21
CD44-236ENST00000533222 KRTAP19-3Q7Z4W3 81 aa1.25□□□□□ -2.21
CD44-236ENST00000533222 FCGBPQ9Y6R7 5405 aaPredicted RBP1.22□□□□□ -2.21
CD44-236ENST00000533222 KRTAP21-1Q3LI58 79 aa1.22□□□□□ -2.21
CD44-236ENST00000533222 UBR4Q5T4S7 5183 aa1.2□□□□□ -2.22
CD44-236ENST00000533222 EPPK1P58107 5090 aaKnown RBP1.19□□□□□ -2.22
CD44-236ENST00000533222 PCLOQ9Y6V0 5065 aa1.19□□□□□ -2.22
CD44-236ENST00000533222 KIAA1109Q2LD37 5005 aa1.19□□□□□ -2.22
CD44-236ENST00000533222 KRTAP6-1Q3LI64 71 aa1.13□□□□□ -2.23
CD44-236ENST00000533222 ABCA13Q86UQ4 5058 aa1.13□□□□□ -2.23
CD44-236ENST00000533222 USH2AO75445 5202 aa1.11□□□□□ -2.23
CD44-236ENST00000533222 FAT4Q6V0I7 4981 aa1.1□□□□□ -2.23
CD44-236ENST00000533222 KRTAP5-10Q6L8G5 202 aa1.05□□□□□ -2.24
CD44-236ENST00000533222 RNF213Q63HN8 5207 aa1.05□□□□□ -2.24
CD44-236ENST00000533222 SSPOA2VEC9 5147 aa1.01□□□□□ -2.25
CD44-236ENST00000533222 MDN1Q9NU22 5596 aa0.97□□□□□ -2.25
CD44-236ENST00000533222 MUC5BQ9HC84 5762 aaPredicted RBP0.9□□□□□ -2.26
CD44-236ENST00000533222 KRTAP19-6Q3LI70 58 aa0.9□□□□□ -2.27
CD44-236ENST00000533222 KMT2DO14686 5537 aa0.87□□□□□ -2.27
CD44-236ENST00000533222 MUC5ACP98088 5654 aa0.87□□□□□ -2.27
CD44-236ENST00000533222 MUC16Q8WXI7 14507 aa0.86□□□□□ -2.27
CD44-236ENST00000533222 AHNAK2Q8IVF2 5795 aa0.81□□□□□ -2.28
CD44-236ENST00000533222 AHNAKQ09666 5890 aaKnown RBP0.81□□□□□ -2.28
CD44-236ENST00000533222 GPR98Q8WXG9 6306 aa0.75□□□□□ -2.29
CD44-236ENST00000533222 MUC12Q9UKN1 5478 aa0.73□□□□□ -2.29
CD44-236ENST00000533222 FSIP2Q5CZC0 6907 aa0.71□□□□□ -2.3
CD44-236ENST00000533222 MACF1Q9UPN3 7388 aaKnown RBP0.68□□□□□ -2.3
CD44-236ENST00000533222 DSTQ03001 7570 aaKnown RBP0.64□□□□□ -2.31
CD44-236ENST00000533222 SYNE2Q8WXH0 6885 aaKnown RBP0.62□□□□□ -2.31
CD44-236ENST00000533222 MT4P47944 62 aa0.59□□□□□ -2.31
CD44-236ENST00000533222 KRTAP20-2Q3LI61 65 aa0.58□□□□□ -2.32
CD44-236ENST00000533222 NEBP20929 6669 aa0.57□□□□□ -2.32
CD44-236ENST00000533222 KRTAP20-1Q3LI63 56 aa0.55□□□□□ -2.32
CD44-236ENST00000533222 PHGR1C9JFL3 82 aa0.51□□□□□ -2.33
Retrieved 78 of 20,778 RNA–protein pairs in 72 ms