RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 RNF213Q63HN8 5207 aa2.13□□□□□ -2.07
PCF11-202ENST00000528336 C9orf92A6NGG3 77 aa2.11□□□□□ -2.07
PCF11-202ENST00000528336 MUC2Q02817 5179 aa2.09□□□□□ -2.07
PCF11-202ENST00000528336 MUC17Q685J3 4493 aa2.09□□□□□ -2.08
PCF11-202ENST00000528336 UBL5Q9BZL1 73 aa2.08□□□□□ -2.08
PCF11-202ENST00000528336 K7EQZ3 153 aa2.06□□□□□ -2.08
PCF11-202ENST00000528336 MMP24-AS1A0A0U1RRL7 71 aa2.05□□□□□ -2.08
PCF11-202ENST00000528336 KRTAP4-1Q9BYQ7 146 aa2.05□□□□□ -2.08
PCF11-202ENST00000528336 FAT4Q6V0I7 4981 aa2.05□□□□□ -2.08
PCF11-202ENST00000528336 MRPL34Q9BQ48 92 aaKnown RBP2.03□□□□□ -2.08
PCF11-202ENST00000528336 WFDC13Q8IUB5 93 aa2.02□□□□□ -2.09
PCF11-202ENST00000528336 KRTAP19-2Q3LHN2 52 aa2□□□□□ -2.09
PCF11-202ENST00000528336 CRCT1Q9UGL9 99 aa2□□□□□ -2.09
PCF11-202ENST00000528336 TP53AIP1Q9HCN2 124 aa1.99□□□□□ -2.09
PCF11-202ENST00000528336 COX6B2Q6YFQ2 88 aa1.98□□□□□ -2.09
PCF11-202ENST00000528336 MT1HP80294 61 aa1.96□□□□□ -2.1
PCF11-202ENST00000528336 C10orf95Q9H7T3 257 aa1.95□□□□□ -2.1
PCF11-202ENST00000528336 FLGP20930 4061 aaPredicted RBP1.95□□□□□ -2.1
PCF11-202ENST00000528336 CRIPTQ9P021 101 aa1.94□□□□□ -2.1
PCF11-202ENST00000528336 M0R2T5 61 aa1.92□□□□□ -2.1
PCF11-202ENST00000528336 H1FX-AS1Q4G0G2 97 aa1.91□□□□□ -2.1
PCF11-202ENST00000528336 S4R3F8 94 aa1.86□□□□□ -2.11
PCF11-202ENST00000528336 MT2AP02795 61 aa1.85□□□□□ -2.11
PCF11-202ENST00000528336 GPR98Q8WXG9 6306 aa1.84□□□□□ -2.11
PCF11-202ENST00000528336 MT1FP04733 61 aa1.84□□□□□ -2.11
PCF11-202ENST00000528336 FSIP2Q5CZC0 6907 aa1.83□□□□□ -2.12
PCF11-202ENST00000528336 A0A0D9SG42 100 aa1.82□□□□□ -2.12
PCF11-202ENST00000528336 HMCN1Q96RW7 5635 aa1.8□□□□□ -2.12
PCF11-202ENST00000528336 H0YAA0 97 aa1.79□□□□□ -2.12
PCF11-202ENST00000528336 USH2AO75445 5202 aa1.79□□□□□ -2.12
PCF11-202ENST00000528336 FCGBPQ9Y6R7 5405 aaPredicted RBP1.77□□□□□ -2.13
PCF11-202ENST00000528336 SPRR2GQ9BYE4 73 aa1.76□□□□□ -2.13
PCF11-202ENST00000528336 SSPOA2VEC9 5147 aa1.76□□□□□ -2.13
PCF11-202ENST00000528336 KRTAP19-8Q3LI54 63 aa1.73□□□□□ -2.13
PCF11-202ENST00000528336 KRTAP19-6Q3LI70 58 aa1.71□□□□□ -2.14
PCF11-202ENST00000528336 M0QZ58 72 aa1.7□□□□□ -2.14
PCF11-202ENST00000528336 MT1BP07438 61 aa1.7□□□□□ -2.14
PCF11-202ENST00000528336 MACF1Q9UPN3 7388 aaKnown RBP1.65□□□□□ -2.14
PCF11-202ENST00000528336 SYNE2Q8WXH0 6885 aaKnown RBP1.65□□□□□ -2.15
PCF11-202ENST00000528336 MT1XP80297 61 aa1.63□□□□□ -2.15
PCF11-202ENST00000528336 NEBP20929 6669 aa1.62□□□□□ -2.15
PCF11-202ENST00000528336 KMT2DO14686 5537 aa1.54□□□□□ -2.16
PCF11-202ENST00000528336 KRTAP8-1Q8IUC2 63 aa1.52□□□□□ -2.17
PCF11-202ENST00000528336 MUC12Q9UKN1 5478 aa1.51□□□□□ -2.17
PCF11-202ENST00000528336 SPRR2FQ96RM1 72 aa1.5□□□□□ -2.17
PCF11-202ENST00000528336 AHNAK2Q8IVF2 5795 aa1.49□□□□□ -2.17
PCF11-202ENST00000528336 MDN1Q9NU22 5596 aa1.49□□□□□ -2.17
PCF11-202ENST00000528336 TNP1P09430 55 aa1.49□□□□□ -2.17
PCF11-202ENST00000528336 KRTAP20-1Q3LI63 56 aa1.47□□□□□ -2.17
PCF11-202ENST00000528336 SPRR2EP22531 72 aa1.45□□□□□ -2.18
PCF11-202ENST00000528336 SPRR2BP35325 72 aa1.45□□□□□ -2.18
PCF11-202ENST00000528336 SPRR2AP35326 72 aa1.45□□□□□ -2.18
PCF11-202ENST00000528336 KRTAP19-7Q3SYF9 63 aa1.45□□□□□ -2.18
PCF11-202ENST00000528336 MT1EP04732 61 aa1.44□□□□□ -2.18
PCF11-202ENST00000528336 KRTAP19-5Q3LI72 72 aa1.43□□□□□ -2.18
PCF11-202ENST00000528336 KRTAP19-3Q7Z4W3 81 aa1.41□□□□□ -2.18
PCF11-202ENST00000528336 SPRR2DP22532 72 aa1.4□□□□□ -2.19
PCF11-202ENST00000528336 AHNAKQ09666 5890 aaKnown RBP1.4□□□□□ -2.19
PCF11-202ENST00000528336 KRTAP2-3P0C7H8 128 aa1.39□□□□□ -2.19
PCF11-202ENST00000528336 KRTAP2-4Q9BYR9 128 aa1.39□□□□□ -2.19
PCF11-202ENST00000528336 DSTQ03001 7570 aaKnown RBP1.38□□□□□ -2.19
PCF11-202ENST00000528336 MT1GP13640 62 aa1.38□□□□□ -2.19
PCF11-202ENST00000528336 MT1LQ93083 61 aa1.38□□□□□ -2.19
PCF11-202ENST00000528336 MT1MQ8N339 61 aa1.36□□□□□ -2.19
PCF11-202ENST00000528336 KRTAP2-1Q9BYU5 128 aa1.35□□□□□ -2.19
PCF11-202ENST00000528336 MUC5BQ9HC84 5762 aaPredicted RBP1.34□□□□□ -2.2
PCF11-202ENST00000528336 MT4P47944 62 aa1.22□□□□□ -2.21
PCF11-202ENST00000528336 MUC16Q8WXI7 14507 aa1.2□□□□□ -2.22
PCF11-202ENST00000528336 MT1AP04731 61 aa1.19□□□□□ -2.22
PCF11-202ENST00000528336 KRTAP5-10Q6L8G5 202 aa1.19□□□□□ -2.22
PCF11-202ENST00000528336 MUC5ACP98088 5654 aa1.17□□□□□ -2.22
PCF11-202ENST00000528336 KRTAP20-2Q3LI61 65 aa1.17□□□□□ -2.22
PCF11-202ENST00000528336 KRTAP6-1Q3LI64 71 aa1.16□□□□□ -2.22
PCF11-202ENST00000528336 SYNE1Q8NF91 8797 aaKnown RBP1.15□□□□□ -2.22
PCF11-202ENST00000528336 KRTAP6-2Q3LI66 62 aa1.1□□□□□ -2.23
PCF11-202ENST00000528336 PRM1P04553 51 aa1.08□□□□□ -2.24
PCF11-202ENST00000528336 KRTAP21-1Q3LI58 79 aa0.98□□□□□ -2.25
PCF11-202ENST00000528336 PHGR1C9JFL3 82 aa0.74□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 118.9 ms