RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 AEBP2Q6ZN18 517 aaPredicted RBP30■■■□□ 2.39
PCF11-202ENST00000528336 CHIC1Q5VXU3 224 aa29.42■■■□□ 2.3
PCF11-202ENST00000528336 PHF23Q9BUL5 403 aaPredicted RBP25.92■■□□□ 1.74
PCF11-202ENST00000528336 SENP3Q9H4L4 574 aaPredicted RBP25.39■■□□□ 1.66
PCF11-202ENST00000528336 PLPPR3Q6T4P5 718 aa23.95■■□□□ 1.42
PCF11-202ENST00000528336 FOXD1Q16676 465 aa23.59■■□□□ 1.37
PCF11-202ENST00000528336 ADRA2BP18089 450 aa22.86■■□□□ 1.25
PCF11-202ENST00000528336 PPP6R1Q9UPN7 881 aa22.85■■□□□ 1.25
PCF11-202ENST00000528336 PIAS4Q8N2W9 510 aaPredicted RBP22.3■■□□□ 1.16
PCF11-202ENST00000528336 MSH5O43196 834 aa21.65■■□□□ 1.06
PCF11-202ENST00000528336 PPP4R3CPQ6ZMV5 832 aa21.17■□□□□ 0.98
PCF11-202ENST00000528336 SCAF1Q9H7N4 1312 aaKnown RBP20.86■□□□□ 0.93
PCF11-202ENST00000528336 KCNA4P22459 653 aa20.86■□□□□ 0.93
PCF11-202ENST00000528336 MAPK8IP2Q13387 824 aaPredicted RBP20.71■□□□□ 0.91
PCF11-202ENST00000528336 NCBP3Q53F19 620 aaKnown RBP20.64■□□□□ 0.89
PCF11-202ENST00000528336 CNKSR2Q8WXI2 1034 aa20.51■□□□□ 0.87
PCF11-202ENST00000528336 NPM3O75607 178 aaKnown RBP20.33■□□□□ 0.85
PCF11-202ENST00000528336 DMRT2Q9Y5R5 561 aa20.29■□□□□ 0.84
PCF11-202ENST00000528336 RNF216Q9NWF9 866 aaPredicted RBP20.05■□□□□ 0.8
PCF11-202ENST00000528336 HOXD11P31277 338 aaPredicted RBP19.92■□□□□ 0.78
PCF11-202ENST00000528336 SLC4A1APQ9BWU0 796 aaKnown RBP19.9■□□□□ 0.78
PCF11-202ENST00000528336 DNAJC5BQ9UF47 199 aa19.58■□□□□ 0.72
PCF11-202ENST00000528336 EHMT2Q96KQ7 1210 aa19.56■□□□□ 0.72
PCF11-202ENST00000528336 DCAF8L1A6NGE4 600 aa19.54■□□□□ 0.72
PCF11-202ENST00000528336 POTEDQ86YR6 584 aa19.49■□□□□ 0.71
PCF11-202ENST00000528336 CSRNP3Q8WYN3 585 aa19.2■□□□□ 0.66
PCF11-202ENST00000528336 ZBTB22O15209 634 aa19.19■□□□□ 0.66
PCF11-202ENST00000528336 SLC4A2P04920 1241 aa19.16■□□□□ 0.66
PCF11-202ENST00000528336 FOXD4L1Q9NU39 408 aa19.12■□□□□ 0.65
PCF11-202ENST00000528336 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.08■□□□□ 0.64
PCF11-202ENST00000528336 MYCNP04198 464 aaPredicted RBP18.77■□□□□ 0.6
PCF11-202ENST00000528336 U3KPZ7 1027 aaPredicted RBP18.73■□□□□ 0.59
PCF11-202ENST00000528336 RNF39Q9H2S5 420 aa18.58■□□□□ 0.56
PCF11-202ENST00000528336 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.52■□□□□ 0.56
PCF11-202ENST00000528336 HNRNPUL2Q1KMD3 747 aaKnown RBP18.52■□□□□ 0.56
PCF11-202ENST00000528336 SAMD1Q6SPF0 538 aaPredicted RBP18.47■□□□□ 0.55
PCF11-202ENST00000528336 ATXN8OSP0DMR3 200 aa18.4■□□□□ 0.54
PCF11-202ENST00000528336 C1QBPQ07021 282 aaKnown RBP18.35■□□□□ 0.53
PCF11-202ENST00000528336 ATF5Q9Y2D1 282 aaPredicted RBP18.31■□□□□ 0.52
PCF11-202ENST00000528336 APLP2Q06481 763 aa18.29■□□□□ 0.52
PCF11-202ENST00000528336 SPINK5Q9NQ38 1064 aaPredicted RBP18.21■□□□□ 0.51
PCF11-202ENST00000528336 CAPN15O75808 1086 aa18.15■□□□□ 0.5
PCF11-202ENST00000528336 TRHP20396 242 aaPredicted RBP18.11■□□□□ 0.49
PCF11-202ENST00000528336 CACNB1Q02641 598 aaPredicted RBP18.06■□□□□ 0.48
PCF11-202ENST00000528336 ZNF219Q9P2Y4 722 aaPredicted RBP18.02■□□□□ 0.48
PCF11-202ENST00000528336 ABCB7O75027 752 aa17.83■□□□□ 0.44
PCF11-202ENST00000528336 POLA2Q14181 598 aa17.83■□□□□ 0.44
PCF11-202ENST00000528336 DSG3P32926 999 aa17.74■□□□□ 0.43
PCF11-202ENST00000528336 FBLN2P98095 1184 aa17.51■□□□□ 0.39
PCF11-202ENST00000528336 MKRN4PQ13434 485 aaPredicted RBP17.5■□□□□ 0.39
PCF11-202ENST00000528336 ZBTB12Q9Y330 459 aaPredicted RBP17.46■□□□□ 0.39
PCF11-202ENST00000528336 FKBP8Q14318 412 aa17.38■□□□□ 0.37
PCF11-202ENST00000528336 OSCARQ8IYS5 282 aa17.2■□□□□ 0.34
PCF11-202ENST00000528336 SPDYE4A6NLX3 237 aa17.19■□□□□ 0.34
PCF11-202ENST00000528336 ZNF692Q9BU19 519 aaPredicted RBP17.04■□□□□ 0.32
PCF11-202ENST00000528336 SPDYE2BA6NHP3 402 aa17.02■□□□□ 0.32
PCF11-202ENST00000528336 SPDYE6P0CI01 402 aa17.02■□□□□ 0.32
PCF11-202ENST00000528336 SPDYE2Q495Y8 402 aa17.02■□□□□ 0.32
PCF11-202ENST00000528336 SSUH2Q9Y2M2 353 aa16.89■□□□□ 0.29
PCF11-202ENST00000528336 RBM42Q9BTD8 480 aaKnown RBP16.88■□□□□ 0.29
PCF11-202ENST00000528336 PROM2Q8N271 834 aa16.84■□□□□ 0.29
PCF11-202ENST00000528336 PABPN1Q86U42 306 aaKnown RBP eCLIP16.82■□□□□ 0.28
PCF11-202ENST00000528336 AKT1S1Q96B36 256 aa16.72■□□□□ 0.27
PCF11-202ENST00000528336 FBXO3Q9UK99 471 aa16.67■□□□□ 0.26
PCF11-202ENST00000528336 REM2Q8IYK8 340 aaPredicted RBP16.59■□□□□ 0.25
PCF11-202ENST00000528336 STAG3Q9UJ98 1225 aa16.52■□□□□ 0.24
PCF11-202ENST00000528336 SPDYE1Q8NFV5 336 aaPredicted RBP16.5■□□□□ 0.23
PCF11-202ENST00000528336 CLEC11AQ9Y240 323 aa16.49■□□□□ 0.23
PCF11-202ENST00000528336 VASPP50552 380 aaPredicted RBP16.45■□□□□ 0.22
PCF11-202ENST00000528336 PITPNM1O00562 1244 aa16.4■□□□□ 0.22
PCF11-202ENST00000528336 PRR29P0C7W0 189 aa16.34■□□□□ 0.21
PCF11-202ENST00000528336 MIER1Q8N108 512 aa16.34■□□□□ 0.21
PCF11-202ENST00000528336 PLCD3Q8N3E9 789 aa16.32■□□□□ 0.2
PCF11-202ENST00000528336 IFNLR1Q8IU57 520 aaPredicted RBP16.26■□□□□ 0.19
PCF11-202ENST00000528336 KLHL34Q8N239 644 aa16.21■□□□□ 0.19
PCF11-202ENST00000528336 PLEKHG5O94827 1062 aa16.19■□□□□ 0.18
PCF11-202ENST00000528336 CHRDL2Q6WN34 429 aa16.16■□□□□ 0.18
PCF11-202ENST00000528336 CREBZFQ9NS37 354 aa16.13■□□□□ 0.17
PCF11-202ENST00000528336 CHADLQ6NUI6 762 aa16.07■□□□□ 0.16
PCF11-202ENST00000528336 RTN4Q9NQC3 1192 aaKnown RBP16.06■□□□□ 0.16
PCF11-202ENST00000528336 AMER1Q5JTC6 1135 aaPredicted RBP16.05■□□□□ 0.16
PCF11-202ENST00000528336 ZBTB47Q9UFB7 747 aaPredicted RBP16.05■□□□□ 0.16
PCF11-202ENST00000528336 SPOCK2Q92563 424 aa16.04■□□□□ 0.16
PCF11-202ENST00000528336 FXR2P51116 673 aaKnown RBP eCLIP16.02■□□□□ 0.16
PCF11-202ENST00000528336 PRKAR2AP13861 404 aaKnown RBP16.01■□□□□ 0.15
PCF11-202ENST00000528336 PIP4P2Q8N4L2 257 aa15.99■□□□□ 0.15
PCF11-202ENST00000528336 MNX1P50219 401 aaPredicted RBP15.96■□□□□ 0.15
PCF11-202ENST00000528336 FARP1Q9Y4F1 1045 aaPredicted RBP15.89■□□□□ 0.13
PCF11-202ENST00000528336 NPM1P06748 294 aaKnown RBP eCLIP15.87■□□□□ 0.13
PCF11-202ENST00000528336 NUBP1P53384 320 aa15.83■□□□□ 0.12
PCF11-202ENST00000528336 CIZ1Q9ULV3 898 aaPredicted RBP15.82■□□□□ 0.12
PCF11-202ENST00000528336 DCAF8Q5TAQ9 597 aa15.77■□□□□ 0.12
PCF11-202ENST00000528336 PKD2Q13563 968 aa15.76■□□□□ 0.11
PCF11-202ENST00000528336 RASEFQ8IZ41 740 aa15.76■□□□□ 0.11
PCF11-202ENST00000528336 FAM212AQ96EL1 285 aa15.71■□□□□ 0.11
PCF11-202ENST00000528336 GSE1Q14687 1217 aa15.7■□□□□ 0.1
PCF11-202ENST00000528336 TSPYL2Q9H2G4 693 aaPredicted RBP15.68■□□□□ 0.1
PCF11-202ENST00000528336 ECM2O94769 699 aaPredicted RBP15.67■□□□□ 0.1
PCF11-202ENST00000528336 PAK3O75914 559 aaPredicted RBP15.57■□□□□ 0.08
PCF11-202ENST00000528336 DCAF8L2P0C7V8 631 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms