RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 MUC12Q9UKN1 5478 aa3.4□□□□□ -1.87
PDGFRB-207ENST00000520579 KRTAP2-3P0C7H8 128 aa3.37□□□□□ -1.87
PDGFRB-207ENST00000520579 KRTAP2-4Q9BYR9 128 aa3.37□□□□□ -1.87
PDGFRB-207ENST00000520579 KRTAP2-1Q9BYU5 128 aa3.37□□□□□ -1.87
PDGFRB-207ENST00000520579 MT1GP13640 62 aa3.36□□□□□ -1.87
PDGFRB-207ENST00000520579 SSPOA2VEC9 5147 aa3.36□□□□□ -1.87
PDGFRB-207ENST00000520579 KRTAP19-7Q3SYF9 63 aa3.34□□□□□ -1.88
PDGFRB-207ENST00000520579 LCE1AQ5T7P2 110 aa3.33□□□□□ -1.88
PDGFRB-207ENST00000520579 KRTAP4-9Q9BYQ8 210 aa3.32□□□□□ -1.88
PDGFRB-207ENST00000520579 MT1LQ93083 61 aa3.28□□□□□ -1.88
PDGFRB-207ENST00000520579 LCE1EQ5T753 118 aa3.28□□□□□ -1.88
PDGFRB-207ENST00000520579 LCE3BQ5TA77 95 aa3.27□□□□□ -1.89
PDGFRB-207ENST00000520579 SYNE2Q8WXH0 6885 aaKnown RBP3.27□□□□□ -1.89
PDGFRB-207ENST00000520579 KRTAP2-2Q9BYT5 123 aa3.23□□□□□ -1.89
PDGFRB-207ENST00000520579 KRTAP9-2Q9BYQ4 174 aa3.23□□□□□ -1.89
PDGFRB-207ENST00000520579 MT1EP04732 61 aa3.22□□□□□ -1.89
PDGFRB-207ENST00000520579 KRTAP6-3Q3LI67 103 aa3.21□□□□□ -1.9
PDGFRB-207ENST00000520579 MACF1Q9UPN3 7388 aaKnown RBP3.17□□□□□ -1.9
PDGFRB-207ENST00000520579 PRM1P04553 51 aa3.17□□□□□ -1.9
PDGFRB-207ENST00000520579 KRTAP9-6A0A140TA67 174 aa3.12□□□□□ -1.91
PDGFRB-207ENST00000520579 KRTAP19-6Q3LI70 58 aa3.11□□□□□ -1.91
PDGFRB-207ENST00000520579 LCE2DQ5TA82 110 aaPredicted RBP3.11□□□□□ -1.91
PDGFRB-207ENST00000520579 KRTAP9-7A8MTY7 169 aa3.1□□□□□ -1.91
PDGFRB-207ENST00000520579 SPRR2FQ96RM1 72 aa3.08□□□□□ -1.92
PDGFRB-207ENST00000520579 LCE1DQ5T752 114 aa3.08□□□□□ -1.92
PDGFRB-207ENST00000520579 MT1MQ8N339 61 aa3.02□□□□□ -1.93
PDGFRB-207ENST00000520579 MUC19Q7Z5P9 8384 aa2.98□□□□□ -1.93
PDGFRB-207ENST00000520579 LCE3DQ9BYE3 92 aa2.97□□□□□ -1.93
PDGFRB-207ENST00000520579 KRTAP19-3Q7Z4W3 81 aa2.95□□□□□ -1.94
PDGFRB-207ENST00000520579 MDN1Q9NU22 5596 aa2.95□□□□□ -1.94
PDGFRB-207ENST00000520579 LCE1FQ5T754 118 aa2.94□□□□□ -1.94
PDGFRB-207ENST00000520579 LCE3EQ5T5B0 92 aa2.92□□□□□ -1.94
PDGFRB-207ENST00000520579 KRTAP6-1Q3LI64 71 aa2.9□□□□□ -1.95
PDGFRB-207ENST00000520579 SPRR2EP22531 72 aa2.87□□□□□ -1.95
PDGFRB-207ENST00000520579 SPRR2BP35325 72 aa2.87□□□□□ -1.95
PDGFRB-207ENST00000520579 SPRR2AP35326 72 aa2.87□□□□□ -1.95
PDGFRB-207ENST00000520579 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.83□□□□□ -1.96
PDGFRB-207ENST00000520579 KRTAP5-5Q701N2 237 aaPredicted RBP2.83□□□□□ -1.96
PDGFRB-207ENST00000520579 KRTAP6-2Q3LI66 62 aa2.81□□□□□ -1.96
PDGFRB-207ENST00000520579 KRTAP19-4Q3LI73 84 aa2.79□□□□□ -1.96
PDGFRB-207ENST00000520579 LCE5AQ5TCM9 118 aa2.76□□□□□ -1.97
PDGFRB-207ENST00000520579 SPRR2DP22532 72 aa2.74□□□□□ -1.97
PDGFRB-207ENST00000520579 MT1AP04731 61 aa2.68□□□□□ -1.98
PDGFRB-207ENST00000520579 KRTAP5-9P26371 169 aa2.65□□□□□ -1.99
PDGFRB-207ENST00000520579 NEBP20929 6669 aa2.56□□□□□ -2
PDGFRB-207ENST00000520579 MT4P47944 62 aa2.53□□□□□ -2
PDGFRB-207ENST00000520579 KRTAP9-4Q9BYQ2 154 aa2.49□□□□□ -2.01
PDGFRB-207ENST00000520579 MT3P25713 68 aa2.45□□□□□ -2.02
PDGFRB-207ENST00000520579 KRTAP20-1Q3LI63 56 aa2.41□□□□□ -2.02
PDGFRB-207ENST00000520579 KRTAP4-11Q9BYQ6 195 aa2.4□□□□□ -2.03
PDGFRB-207ENST00000520579 KRTAP4-6Q9BYQ5 205 aa2.37□□□□□ -2.03
PDGFRB-207ENST00000520579 LCE1BQ5T7P3 118 aa2.31□□□□□ -2.04
PDGFRB-207ENST00000520579 HMCN1Q96RW7 5635 aa2.28□□□□□ -2.04
PDGFRB-207ENST00000520579 MUC5ACP98088 5654 aa2.27□□□□□ -2.05
PDGFRB-207ENST00000520579 LCE4AQ5TA78 99 aa2.22□□□□□ -2.05
PDGFRB-207ENST00000520579 KRTAP20-2Q3LI61 65 aa2.19□□□□□ -2.06
PDGFRB-207ENST00000520579 KRTAP5-4Q6L8H1 288 aa2.18□□□□□ -2.06
PDGFRB-207ENST00000520579 LCE1CQ5T751 118 aa2.16□□□□□ -2.06
PDGFRB-207ENST00000520579 KRTAP9-9Q9BYP9 154 aa2.13□□□□□ -2.07
PDGFRB-207ENST00000520579 GPR98Q8WXG9 6306 aa2.06□□□□□ -2.08
PDGFRB-207ENST00000520579 KRTAP4-4Q9BYR3 166 aa2.05□□□□□ -2.08
PDGFRB-207ENST00000520579 KRTAP5-2Q701N4 177 aa2.03□□□□□ -2.08
PDGFRB-207ENST00000520579 KRTAP5-3Q6L8H2 238 aa2□□□□□ -2.09
PDGFRB-207ENST00000520579 KRTAP5-10Q6L8G5 202 aa1.99□□□□□ -2.09
PDGFRB-207ENST00000520579 AHNAK2Q8IVF2 5795 aa1.98□□□□□ -2.09
PDGFRB-207ENST00000520579 MUC5BQ9HC84 5762 aaPredicted RBP1.83□□□□□ -2.12
PDGFRB-207ENST00000520579 KRTAP21-1Q3LI58 79 aa1.82□□□□□ -2.12
PDGFRB-207ENST00000520579 KRTAP5-8O75690 187 aa1.79□□□□□ -2.12
PDGFRB-207ENST00000520579 KRTAP4-12Q9BQ66 201 aa1.79□□□□□ -2.12
PDGFRB-207ENST00000520579 KRTAP4-2Q9BYR5 136 aa1.79□□□□□ -2.12
PDGFRB-207ENST00000520579 KRTAP5-1Q6L8H4 278 aa1.78□□□□□ -2.12
PDGFRB-207ENST00000520579 KRTAP5-7Q6L8G8 165 aa1.78□□□□□ -2.12
PDGFRB-207ENST00000520579 KRTAP21-2Q3LI59 83 aa1.71□□□□□ -2.14
PDGFRB-207ENST00000520579 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.57□□□□□ -2.16
PDGFRB-207ENST00000520579 AHNAKQ09666 5890 aaKnown RBP1.57□□□□□ -2.16
PDGFRB-207ENST00000520579 KRTAP5-11Q6L8G4 156 aa1.45□□□□□ -2.18
PDGFRB-207ENST00000520579 PHGR1C9JFL3 82 aa1.27□□□□□ -2.21
PDGFRB-207ENST00000520579 MUC16Q8WXI7 14507 aa1□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 46.6 ms