RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 SPRR2EP22531 72 aa3.86□□□□□ -1.79
SYNPO-204ENST00000519664 SPRR2BP35325 72 aa3.86□□□□□ -1.79
SYNPO-204ENST00000519664 SPRR2AP35326 72 aa3.86□□□□□ -1.79
SYNPO-204ENST00000519664 KMT2DO14686 5537 aa3.86□□□□□ -1.79
SYNPO-204ENST00000519664 KRTAP4-3Q9BYR4 195 aa3.85□□□□□ -1.79
SYNPO-204ENST00000519664 LOC100996750A0A140TA64 210 aa3.83□□□□□ -1.8
SYNPO-204ENST00000519664 KRTAP19-3Q7Z4W3 81 aa3.8□□□□□ -1.8
SYNPO-204ENST00000519664 SYNE2Q8WXH0 6885 aaKnown RBP3.8□□□□□ -1.8
SYNPO-204ENST00000519664 LCE2AQ5TA79 106 aaPredicted RBP3.8□□□□□ -1.8
SYNPO-204ENST00000519664 KRTAP19-7Q3SYF9 63 aa3.78□□□□□ -1.8
SYNPO-204ENST00000519664 MT1MQ8N339 61 aa3.71□□□□□ -1.82
SYNPO-204ENST00000519664 SPRR2DP22532 72 aa3.7□□□□□ -1.82
SYNPO-204ENST00000519664 KRTAP9-6A0A140TA67 174 aa3.69□□□□□ -1.82
SYNPO-204ENST00000519664 KRTAP19-6Q3LI70 58 aa3.69□□□□□ -1.82
SYNPO-204ENST00000519664 LCE3DQ9BYE3 92 aa3.68□□□□□ -1.82
SYNPO-204ENST00000519664 KRTAP9-6A8MVA2 160 aa3.66□□□□□ -1.82
SYNPO-204ENST00000519664 KRTAP9-2Q9BYQ4 174 aa3.65□□□□□ -1.83
SYNPO-204ENST00000519664 KRTAP2-3P0C7H8 128 aa3.64□□□□□ -1.83
SYNPO-204ENST00000519664 KRTAP2-4Q9BYR9 128 aa3.64□□□□□ -1.83
SYNPO-204ENST00000519664 KRTAP2-1Q9BYU5 128 aa3.64□□□□□ -1.83
SYNPO-204ENST00000519664 LCE2DQ5TA82 110 aaPredicted RBP3.62□□□□□ -1.83
SYNPO-204ENST00000519664 LCE3EQ5T5B0 92 aa3.6□□□□□ -1.83
SYNPO-204ENST00000519664 MUC12Q9UKN1 5478 aa3.59□□□□□ -1.83
SYNPO-204ENST00000519664 KRTAP4-9Q9BYQ8 210 aa3.58□□□□□ -1.84
SYNPO-204ENST00000519664 PRM1P04553 51 aa3.47□□□□□ -1.85
SYNPO-204ENST00000519664 MACF1Q9UPN3 7388 aaKnown RBP3.47□□□□□ -1.85
SYNPO-204ENST00000519664 SSPOA2VEC9 5147 aa3.43□□□□□ -1.86
SYNPO-204ENST00000519664 MT4P47944 62 aa3.42□□□□□ -1.86
SYNPO-204ENST00000519664 KRTAP9-7A8MTY7 169 aa3.37□□□□□ -1.87
SYNPO-204ENST00000519664 MT3P25713 68 aa3.36□□□□□ -1.87
SYNPO-204ENST00000519664 MT1AP04731 61 aa3.34□□□□□ -1.87
SYNPO-204ENST00000519664 KRTAP6-1Q3LI64 71 aa3.34□□□□□ -1.87
SYNPO-204ENST00000519664 LCE5AQ5TCM9 118 aa3.32□□□□□ -1.88
SYNPO-204ENST00000519664 MUC19Q7Z5P9 8384 aa3.3□□□□□ -1.88
SYNPO-204ENST00000519664 LCE1AQ5T7P2 110 aa3.25□□□□□ -1.89
SYNPO-204ENST00000519664 LCE1DQ5T752 114 aa3.23□□□□□ -1.89
SYNPO-204ENST00000519664 KRTAP6-3Q3LI67 103 aa3.22□□□□□ -1.89
SYNPO-204ENST00000519664 LCE1BQ5T7P3 118 aa3.22□□□□□ -1.89
SYNPO-204ENST00000519664 KRTAP6-2Q3LI66 62 aa3.2□□□□□ -1.9
SYNPO-204ENST00000519664 MDN1Q9NU22 5596 aa3.18□□□□□ -1.9
SYNPO-204ENST00000519664 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.15□□□□□ -1.91
SYNPO-204ENST00000519664 GPR98Q8WXG9 6306 aa3.11□□□□□ -1.91
SYNPO-204ENST00000519664 KRTAP20-1Q3LI63 56 aa3.09□□□□□ -1.91
SYNPO-204ENST00000519664 KRTAP9-4Q9BYQ2 154 aa3.09□□□□□ -1.91
SYNPO-204ENST00000519664 KRTAP2-2Q9BYT5 123 aa2.95□□□□□ -1.94
SYNPO-204ENST00000519664 LCE4AQ5TA78 99 aa2.94□□□□□ -1.94
SYNPO-204ENST00000519664 KRTAP5-9P26371 169 aa2.88□□□□□ -1.95
SYNPO-204ENST00000519664 NEBP20929 6669 aa2.88□□□□□ -1.95
SYNPO-204ENST00000519664 KRTAP4-6Q9BYQ5 205 aa2.83□□□□□ -1.96
SYNPO-204ENST00000519664 KRTAP5-5Q701N2 237 aaPredicted RBP2.73□□□□□ -1.97
SYNPO-204ENST00000519664 LCE1EQ5T753 118 aa2.69□□□□□ -1.98
SYNPO-204ENST00000519664 MUC5ACP98088 5654 aa2.65□□□□□ -1.99
SYNPO-204ENST00000519664 KRTAP20-2Q3LI61 65 aa2.64□□□□□ -1.99
SYNPO-204ENST00000519664 KRTAP4-11Q9BYQ6 195 aa2.61□□□□□ -1.99
SYNPO-204ENST00000519664 LCE1CQ5T751 118 aa2.55□□□□□ -2
SYNPO-204ENST00000519664 LCE1FQ5T754 118 aa2.55□□□□□ -2
SYNPO-204ENST00000519664 HMCN1Q96RW7 5635 aa2.55□□□□□ -2
SYNPO-204ENST00000519664 KRTAP4-4Q9BYR3 166 aa2.46□□□□□ -2.02
SYNPO-204ENST00000519664 KRTAP9-9Q9BYP9 154 aa2.41□□□□□ -2.02
SYNPO-204ENST00000519664 KRTAP5-4Q6L8H1 288 aa2.41□□□□□ -2.02
SYNPO-204ENST00000519664 KRTAP4-12Q9BQ66 201 aa2.38□□□□□ -2.03
SYNPO-204ENST00000519664 KRTAP4-2Q9BYR5 136 aa2.38□□□□□ -2.03
SYNPO-204ENST00000519664 AHNAK2Q8IVF2 5795 aa2.25□□□□□ -2.05
SYNPO-204ENST00000519664 KRTAP5-3Q6L8H2 238 aa2.14□□□□□ -2.07
SYNPO-204ENST00000519664 KRTAP5-10Q6L8G5 202 aa2.08□□□□□ -2.08
SYNPO-204ENST00000519664 KRTAP5-2Q701N4 177 aa2.08□□□□□ -2.08
SYNPO-204ENST00000519664 AHNAKQ09666 5890 aaKnown RBP2.07□□□□□ -2.08
SYNPO-204ENST00000519664 KRTAP5-8O75690 187 aa2.03□□□□□ -2.09
SYNPO-204ENST00000519664 MUC5BQ9HC84 5762 aaPredicted RBP2□□□□□ -2.09
SYNPO-204ENST00000519664 KRTAP5-1Q6L8H4 278 aa1.88□□□□□ -2.11
SYNPO-204ENST00000519664 KRTAP5-7Q6L8G8 165 aa1.84□□□□□ -2.11
SYNPO-204ENST00000519664 KRTAP21-2Q3LI59 83 aa1.83□□□□□ -2.12
SYNPO-204ENST00000519664 KRTAP21-1Q3LI58 79 aa1.81□□□□□ -2.12
SYNPO-204ENST00000519664 KRTAP5-11Q6L8G4 156 aa1.74□□□□□ -2.13
SYNPO-204ENST00000519664 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.66□□□□□ -2.14
SYNPO-204ENST00000519664 PHGR1C9JFL3 82 aa1.62□□□□□ -2.15
SYNPO-204ENST00000519664 MUC16Q8WXI7 14507 aa1.07□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 40.8 ms