RNA–Protein interactions for RNA: ENST00000512055.5

CPNE4-209, Transcript of copine 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CPNE4, Length 5,431 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-209ENST00000512055 LCE2DQ5TA82 110 aaPredicted RBP3.63□□□□□ -1.83
CPNE4-209ENST00000512055 SYNE1Q8NF91 8797 aaKnown RBP3.62□□□□□ -1.83
CPNE4-209ENST00000512055 USH2AO75445 5202 aa3.59□□□□□ -1.83
CPNE4-209ENST00000512055 MT3P25713 68 aa3.59□□□□□ -1.83
CPNE4-209ENST00000512055 MT1LQ93083 61 aa3.58□□□□□ -1.84
CPNE4-209ENST00000512055 MT1EP04732 61 aa3.58□□□□□ -1.84
CPNE4-209ENST00000512055 PRM1P04553 51 aa3.57□□□□□ -1.84
CPNE4-209ENST00000512055 KRTAP19-6Q3LI70 58 aa3.52□□□□□ -1.85
CPNE4-209ENST00000512055 KRTAP19-3Q7Z4W3 81 aa3.51□□□□□ -1.85
CPNE4-209ENST00000512055 KRTAP19-7Q3SYF9 63 aa3.5□□□□□ -1.85
CPNE4-209ENST00000512055 MT4P47944 62 aa3.49□□□□□ -1.85
CPNE4-209ENST00000512055 KRTAP4-3Q9BYR4 195 aa3.47□□□□□ -1.85
CPNE4-209ENST00000512055 LOC100996750A0A140TA64 210 aa3.44□□□□□ -1.86
CPNE4-209ENST00000512055 KRTAP9-6A0A140TA67 174 aa3.43□□□□□ -1.86
CPNE4-209ENST00000512055 KRTAP9-2Q9BYQ4 174 aa3.43□□□□□ -1.86
CPNE4-209ENST00000512055 MT1MQ8N339 61 aa3.42□□□□□ -1.86
CPNE4-209ENST00000512055 KMT2DO14686 5537 aa3.42□□□□□ -1.86
CPNE4-209ENST00000512055 LCE1BQ5T7P3 118 aa3.36□□□□□ -1.87
CPNE4-209ENST00000512055 KRTAP20-1Q3LI63 56 aa3.35□□□□□ -1.87
CPNE4-209ENST00000512055 KRTAP9-6A8MVA2 160 aa3.32□□□□□ -1.88
CPNE4-209ENST00000512055 DSTQ03001 7570 aaKnown RBP3.3□□□□□ -1.88
CPNE4-209ENST00000512055 LCE1DQ5T752 114 aa3.29□□□□□ -1.88
CPNE4-209ENST00000512055 OBSCNQ5VST9 7968 aa3.28□□□□□ -1.88
CPNE4-209ENST00000512055 FCGBPQ9Y6R7 5405 aaPredicted RBP3.27□□□□□ -1.89
CPNE4-209ENST00000512055 SYNE2Q8WXH0 6885 aaKnown RBP3.27□□□□□ -1.89
CPNE4-209ENST00000512055 GPR98Q8WXG9 6306 aa3.24□□□□□ -1.89
CPNE4-209ENST00000512055 KRTAP9-7A8MTY7 169 aa3.24□□□□□ -1.89
CPNE4-209ENST00000512055 LCE5AQ5TCM9 118 aa3.22□□□□□ -1.89
CPNE4-209ENST00000512055 SSPOA2VEC9 5147 aa3.21□□□□□ -1.9
CPNE4-209ENST00000512055 KRTAP2-3P0C7H8 128 aa3.2□□□□□ -1.9
CPNE4-209ENST00000512055 KRTAP2-4Q9BYR9 128 aa3.2□□□□□ -1.9
CPNE4-209ENST00000512055 KRTAP2-1Q9BYU5 128 aa3.2□□□□□ -1.9
CPNE4-209ENST00000512055 MACF1Q9UPN3 7388 aaKnown RBP3.19□□□□□ -1.9
CPNE4-209ENST00000512055 KRTAP4-9Q9BYQ8 210 aa3.15□□□□□ -1.91
CPNE4-209ENST00000512055 MUC12Q9UKN1 5478 aa3.14□□□□□ -1.91
CPNE4-209ENST00000512055 LCE1CQ5T751 118 aa3.1□□□□□ -1.91
CPNE4-209ENST00000512055 LCE1EQ5T753 118 aa3.1□□□□□ -1.91
CPNE4-209ENST00000512055 LCE1FQ5T754 118 aa3.1□□□□□ -1.91
CPNE4-209ENST00000512055 LCE1AQ5T7P2 110 aa3.1□□□□□ -1.91
CPNE4-209ENST00000512055 MT1AP04731 61 aa3.09□□□□□ -1.91
CPNE4-209ENST00000512055 KRTAP6-1Q3LI64 71 aa3.05□□□□□ -1.92
CPNE4-209ENST00000512055 LCE4AQ5TA78 99 aa3.02□□□□□ -1.93
CPNE4-209ENST00000512055 KRTAP6-2Q3LI66 62 aa2.96□□□□□ -1.94
CPNE4-209ENST00000512055 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.96□□□□□ -1.94
CPNE4-209ENST00000512055 KRTAP6-3Q3LI67 103 aa2.95□□□□□ -1.94
CPNE4-209ENST00000512055 MUC19Q7Z5P9 8384 aa2.93□□□□□ -1.94
CPNE4-209ENST00000512055 KRTAP2-2Q9BYT5 123 aa2.92□□□□□ -1.94
CPNE4-209ENST00000512055 KRTAP9-4Q9BYQ2 154 aa2.88□□□□□ -1.95
CPNE4-209ENST00000512055 MDN1Q9NU22 5596 aa2.86□□□□□ -1.95
CPNE4-209ENST00000512055 KRTAP5-9P26371 169 aa2.81□□□□□ -1.96
CPNE4-209ENST00000512055 KRTAP9-9Q9BYP9 154 aa2.79□□□□□ -1.96
CPNE4-209ENST00000512055 NEBP20929 6669 aa2.72□□□□□ -1.97
CPNE4-209ENST00000512055 KRTAP4-11Q9BYQ6 195 aa2.62□□□□□ -1.99
CPNE4-209ENST00000512055 KRTAP4-6Q9BYQ5 205 aa2.61□□□□□ -1.99
CPNE4-209ENST00000512055 KRTAP5-5Q701N2 237 aaPredicted RBP2.52□□□□□ -2.01
CPNE4-209ENST00000512055 KRTAP20-2Q3LI61 65 aa2.5□□□□□ -2.01
CPNE4-209ENST00000512055 KRTAP5-4Q6L8H1 288 aa2.29□□□□□ -2.04
CPNE4-209ENST00000512055 KRTAP4-12Q9BQ66 201 aa2.29□□□□□ -2.04
CPNE4-209ENST00000512055 KRTAP4-2Q9BYR5 136 aa2.29□□□□□ -2.04
CPNE4-209ENST00000512055 KRTAP4-4Q9BYR3 166 aa2.28□□□□□ -2.05
CPNE4-209ENST00000512055 MUC5ACP98088 5654 aa2.23□□□□□ -2.05
CPNE4-209ENST00000512055 HMCN1Q96RW7 5635 aa2.2□□□□□ -2.06
CPNE4-209ENST00000512055 AHNAK2Q8IVF2 5795 aa2.17□□□□□ -2.06
CPNE4-209ENST00000512055 KRTAP5-2Q701N4 177 aa2.06□□□□□ -2.08
CPNE4-209ENST00000512055 KRTAP5-3Q6L8H2 238 aa2.05□□□□□ -2.08
CPNE4-209ENST00000512055 PHGR1C9JFL3 82 aa1.94□□□□□ -2.1
CPNE4-209ENST00000512055 KRTAP5-10Q6L8G5 202 aa1.92□□□□□ -2.1
CPNE4-209ENST00000512055 KRTAP5-8O75690 187 aa1.9□□□□□ -2.1
CPNE4-209ENST00000512055 KRTAP5-1Q6L8H4 278 aa1.83□□□□□ -2.12
CPNE4-209ENST00000512055 AHNAKQ09666 5890 aaKnown RBP1.81□□□□□ -2.12
CPNE4-209ENST00000512055 MUC5BQ9HC84 5762 aaPredicted RBP1.79□□□□□ -2.12
CPNE4-209ENST00000512055 KRTAP21-2Q3LI59 83 aa1.73□□□□□ -2.13
CPNE4-209ENST00000512055 KRTAP5-11Q6L8G4 156 aa1.68□□□□□ -2.14
CPNE4-209ENST00000512055 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.63□□□□□ -2.15
CPNE4-209ENST00000512055 KRTAP5-7Q6L8G8 165 aa1.5□□□□□ -2.17
CPNE4-209ENST00000512055 KRTAP21-1Q3LI58 79 aa1.49□□□□□ -2.17
CPNE4-209ENST00000512055 MUC16Q8WXI7 14507 aa0.96□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 136.4 ms