RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 SPTSSBQ8NFR3 76 aa3.73□□□□□ -1.81
LSM6-204ENST00000504181 SPINT4Q6UDR6 99 aa3.72□□□□□ -1.81
LSM6-204ENST00000504181 KRTAP12-3P60328 96 aa3.71□□□□□ -1.82
LSM6-204ENST00000504181 KRTAP6-2Q3LI66 62 aa3.71□□□□□ -1.82
LSM6-204ENST00000504181 HIST1H4AP62805 103 aaKnown RBP3.68□□□□□ -1.82
LSM6-204ENST00000504181 MT1AP04731 61 aa3.67□□□□□ -1.82
LSM6-204ENST00000504181 ACYP2P14621 99 aa3.63□□□□□ -1.83
LSM6-204ENST00000504181 TNP1P09430 55 aa3.62□□□□□ -1.83
LSM6-204ENST00000504181 PRO0461Q9UI25 63 aa3.6□□□□□ -1.83
LSM6-204ENST00000504181 KRTAP12-1P59990 96 aa3.59□□□□□ -1.83
LSM6-204ENST00000504181 OCR1Q9BZK8 76 aa3.59□□□□□ -1.83
LSM6-204ENST00000504181 CHKB-CPT1BH3BT56 60 aa3.58□□□□□ -1.84
LSM6-204ENST00000504181 LCE3CQ5T5A8 94 aa3.58□□□□□ -1.84
LSM6-204ENST00000504181 KRTAP4-4Q9BYR3 166 aa3.58□□□□□ -1.84
LSM6-204ENST00000504181 SPATA8Q6RVD6 105 aa3.55□□□□□ -1.84
LSM6-204ENST00000504181 H3BPC8 53 aa3.54□□□□□ -1.84
LSM6-204ENST00000504181 ATP5EP2Q5VTU8 51 aa3.52□□□□□ -1.85
LSM6-204ENST00000504181 ETDBQ3ZM63 59 aa3.43□□□□□ -1.86
LSM6-204ENST00000504181 NDUFAF8A1L188 74 aa3.37□□□□□ -1.87
LSM6-204ENST00000504181 SCGB1A1P11684 91 aa3.36□□□□□ -1.87
LSM6-204ENST00000504181 KRTAP25-1Q3LHN0 102 aa3.36□□□□□ -1.87
LSM6-204ENST00000504181 A0A1B0GU33 70 aa3.32□□□□□ -1.88
LSM6-204ENST00000504181 SERP1Q9Y6X1 66 aa3.31□□□□□ -1.88
LSM6-204ENST00000504181 SEC61GP60059 68 aa3.29□□□□□ -1.88
LSM6-204ENST00000504181 F8W1H4 67 aa3.28□□□□□ -1.88
LSM6-204ENST00000504181 FAM240AA0A1B0GVK7 77 aa3.27□□□□□ -1.89
LSM6-204ENST00000504181 A8MU10 97 aa3.27□□□□□ -1.89
LSM6-204ENST00000504181 LCE3EQ5T5B0 92 aa3.27□□□□□ -1.89
LSM6-204ENST00000504181 PRAC1Q96KF2 57 aa3.26□□□□□ -1.89
LSM6-204ENST00000504181 LINC00643Q86TS7 51 aa3.24□□□□□ -1.89
LSM6-204ENST00000504181 SMIM26A0A096LP01 95 aa3.22□□□□□ -1.89
LSM6-204ENST00000504181 LCE1BQ5T7P3 118 aa3.21□□□□□ -1.9
LSM6-204ENST00000504181 GTF2H5Q6ZYL4 71 aa3.2□□□□□ -1.9
LSM6-204ENST00000504181 SMIM6P0DI80 62 aa3.18□□□□□ -1.9
LSM6-204ENST00000504181 COL5A1-AS1Q5SY13 56 aa3.15□□□□□ -1.91
LSM6-204ENST00000504181 PHGR1C9JFL3 82 aa3.1□□□□□ -1.91
LSM6-204ENST00000504181 COA5Q86WW8 74 aa3.07□□□□□ -1.92
LSM6-204ENST00000504181 SPANXA2-OT1Q8N9U9 137 aa3.05□□□□□ -1.92
LSM6-204ENST00000504181 SNURFQ9Y675 71 aa3.05□□□□□ -1.92
LSM6-204ENST00000504181 LCE1CQ5T751 118 aa3.04□□□□□ -1.92
LSM6-204ENST00000504181 SERP2Q8N6R1 65 aa3.02□□□□□ -1.93
LSM6-204ENST00000504181 A0A1B0GU69 56 aa2.92□□□□□ -1.94
LSM6-204ENST00000504181 SMIM20Q8N5G0 67 aa2.88□□□□□ -1.95
LSM6-204ENST00000504181 H7BZZ5 65 aa2.83□□□□□ -1.96
LSM6-204ENST00000504181 PRR15LQ9BU68 103 aa2.77□□□□□ -1.97
LSM6-204ENST00000504181 PCP4L1A6NKN8 68 aa2.75□□□□□ -1.97
LSM6-204ENST00000504181 LOC105371267A0A1B0GV96 52 aa2.63□□□□□ -1.99
LSM6-204ENST00000504181 LCE3DQ9BYE3 92 aa2.59□□□□□ -1.99
LSM6-204ENST00000504181 J3QR89 54 aa2.57□□□□□ -2
LSM6-204ENST00000504181 RPS28P62857 69 aaKnown RBP2.55□□□□□ -2
LSM6-204ENST00000504181 MUC19Q7Z5P9 8384 aa2.47□□□□□ -2.01
LSM6-204ENST00000504181 UQCR11O14957 56 aa2.47□□□□□ -2.01
LSM6-204ENST00000504181 K7ERS5 55 aa2.45□□□□□ -2.02
LSM6-204ENST00000504181 KRTAP21-2Q3LI59 83 aa2.44□□□□□ -2.02
LSM6-204ENST00000504181 LINC01558Q9Y6Z2 57 aa2.37□□□□□ -2.03
LSM6-204ENST00000504181 A0A1B0GV90 55 aa2.36□□□□□ -2.03
LSM6-204ENST00000504181 MIR22HGQ0VDD5 57 aa2.36□□□□□ -2.03
LSM6-204ENST00000504181 KRTAP21-1Q3LI58 79 aa2.33□□□□□ -2.04
LSM6-204ENST00000504181 COX7CP15954 63 aa2.24□□□□□ -2.05
LSM6-204ENST00000504181 CDC42SE1Q9NRR8 79 aa2.23□□□□□ -2.05
LSM6-204ENST00000504181 V9GYY9 64 aa2.17□□□□□ -2.06
LSM6-204ENST00000504181 PSPHP1O15172 72 aa2.16□□□□□ -2.06
LSM6-204ENST00000504181 ROMO1P60602 79 aa2.14□□□□□ -2.07
LSM6-204ENST00000504181 Q1T7F1 81 aa2.12□□□□□ -2.07
LSM6-204ENST00000504181 K7ERU9 68 aa2.1□□□□□ -2.07
LSM6-204ENST00000504181 LUZP6Q538Z0 58 aa2.09□□□□□ -2.07
LSM6-204ENST00000504181 PRO0628Q9UI54 55 aa2.08□□□□□ -2.08
LSM6-204ENST00000504181 ANAPC13Q9BS18 74 aa1.97□□□□□ -2.09
LSM6-204ENST00000504181 ATP5EP56381 51 aaPredicted RBP1.94□□□□□ -2.1
LSM6-204ENST00000504181 A6NED7 52 aa1.85□□□□□ -2.11
LSM6-204ENST00000504181 CCDC179H3BU77 68 aa1.77□□□□□ -2.13
LSM6-204ENST00000504181 MUC16Q8WXI7 14507 aa1.77□□□□□ -2.13
LSM6-204ENST00000504181 TMEM258P61165 79 aa1.59□□□□□ -2.15
LSM6-204ENST00000504181 PMAIP1Q13794 54 aa1.55□□□□□ -2.16
LSM6-204ENST00000504181 KTN1-AS1Q86SY8 53 aa1.47□□□□□ -2.17
LSM6-204ENST00000504181 INE1O15225 51 aa1.11□□□□□ -2.23
LSM6-204ENST00000504181 PRM1P04553 51 aa1.08□□□□□ -2.24
LSM6-204ENST00000504181 BRK1Q8WUW1 75 aa0.9□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 9.5 ms