RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CRCT1Q9UGL9 99 aa5.66□□□□□ -1.5
CCDC88B-210ENST00000494566 LCE2DQ5TA82 110 aaPredicted RBP5.64□□□□□ -1.51
CCDC88B-210ENST00000494566 KRTAP4-3Q9BYR4 195 aa5.63□□□□□ -1.51
CCDC88B-210ENST00000494566 LOC100996750A0A140TA64 210 aa5.62□□□□□ -1.51
CCDC88B-210ENST00000494566 SYNE1Q8NF91 8797 aaKnown RBP5.52□□□□□ -1.53
CCDC88B-210ENST00000494566 KRTAP2-3P0C7H8 128 aa5.48□□□□□ -1.53
CCDC88B-210ENST00000494566 KRTAP2-4Q9BYR9 128 aa5.48□□□□□ -1.53
CCDC88B-210ENST00000494566 KRTAP2-1Q9BYU5 128 aa5.48□□□□□ -1.53
CCDC88B-210ENST00000494566 MT1GP13640 62 aa5.47□□□□□ -1.53
CCDC88B-210ENST00000494566 KRTAP9-2Q9BYQ4 174 aa5.47□□□□□ -1.53
CCDC88B-210ENST00000494566 MACF1Q9UPN3 7388 aaKnown RBP5.46□□□□□ -1.53
CCDC88B-210ENST00000494566 OBSCNQ5VST9 7968 aa5.43□□□□□ -1.54
CCDC88B-210ENST00000494566 KRTAP19-3Q7Z4W3 81 aa5.38□□□□□ -1.55
CCDC88B-210ENST00000494566 MT1MQ8N339 61 aa5.38□□□□□ -1.55
CCDC88B-210ENST00000494566 KRTAP9-6A0A140TA67 174 aa5.37□□□□□ -1.55
CCDC88B-210ENST00000494566 KRTAP19-4Q3LI73 84 aa5.36□□□□□ -1.55
CCDC88B-210ENST00000494566 SYNE2Q8WXH0 6885 aaKnown RBP5.36□□□□□ -1.55
CCDC88B-210ENST00000494566 SPRR2FQ96RM1 72 aa5.35□□□□□ -1.55
CCDC88B-210ENST00000494566 MDN1Q9NU22 5596 aa5.31□□□□□ -1.56
CCDC88B-210ENST00000494566 LCE5AQ5TCM9 118 aa5.2□□□□□ -1.58
CCDC88B-210ENST00000494566 KRTAP4-9Q9BYQ8 210 aa5.19□□□□□ -1.58
CCDC88B-210ENST00000494566 KRTAP12-4P60329 112 aa5.16□□□□□ -1.58
CCDC88B-210ENST00000494566 LCE3BQ5TA77 95 aa5.15□□□□□ -1.58
CCDC88B-210ENST00000494566 LCE1AQ5T7P2 110 aa4.95□□□□□ -1.62
CCDC88B-210ENST00000494566 KRTAP6-1Q3LI64 71 aa4.92□□□□□ -1.62
CCDC88B-210ENST00000494566 SPRR2EP22531 72 aa4.88□□□□□ -1.63
CCDC88B-210ENST00000494566 SPRR2BP35325 72 aa4.88□□□□□ -1.63
CCDC88B-210ENST00000494566 SPRR2AP35326 72 aa4.88□□□□□ -1.63
CCDC88B-210ENST00000494566 KRTAP5-9P26371 169 aa4.86□□□□□ -1.63
CCDC88B-210ENST00000494566 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.85□□□□□ -1.63
CCDC88B-210ENST00000494566 KRTAP9-7A8MTY7 169 aa4.79□□□□□ -1.64
CCDC88B-210ENST00000494566 MT1AP04731 61 aa4.76□□□□□ -1.65
CCDC88B-210ENST00000494566 KRTAP5-5Q701N2 237 aaPredicted RBP4.72□□□□□ -1.65
CCDC88B-210ENST00000494566 LCE3DQ9BYE3 92 aa4.68□□□□□ -1.66
CCDC88B-210ENST00000494566 KRTAP6-3Q3LI67 103 aa4.67□□□□□ -1.66
CCDC88B-210ENST00000494566 SPRR2DP22532 72 aa4.66□□□□□ -1.66
CCDC88B-210ENST00000494566 PRM1P04553 51 aa4.62□□□□□ -1.67
CCDC88B-210ENST00000494566 LCE3EQ5T5B0 92 aa4.58□□□□□ -1.68
CCDC88B-210ENST00000494566 KRTAP9-4Q9BYQ2 154 aa4.5□□□□□ -1.69
CCDC88B-210ENST00000494566 KRTAP6-2Q3LI66 62 aa4.43□□□□□ -1.7
CCDC88B-210ENST00000494566 NEBP20929 6669 aa4.32□□□□□ -1.72
CCDC88B-210ENST00000494566 MT3P25713 68 aa4.28□□□□□ -1.72
CCDC88B-210ENST00000494566 KRTAP20-1Q3LI63 56 aa4.26□□□□□ -1.73
CCDC88B-210ENST00000494566 KRTAP4-6Q9BYQ5 205 aa4.21□□□□□ -1.74
CCDC88B-210ENST00000494566 MT4P47944 62 aa4.2□□□□□ -1.74
CCDC88B-210ENST00000494566 KRTAP5-4Q6L8H1 288 aa4.17□□□□□ -1.74
CCDC88B-210ENST00000494566 HMCN1Q96RW7 5635 aa4.08□□□□□ -1.76
CCDC88B-210ENST00000494566 KRTAP2-2Q9BYT5 123 aa4.05□□□□□ -1.76
CCDC88B-210ENST00000494566 KRTAP20-2Q3LI61 65 aa4□□□□□ -1.77
CCDC88B-210ENST00000494566 LCE1DQ5T752 114 aa3.91□□□□□ -1.78
CCDC88B-210ENST00000494566 LCE4AQ5TA78 99 aa3.91□□□□□ -1.78
CCDC88B-210ENST00000494566 KRTAP5-2Q701N4 177 aa3.88□□□□□ -1.79
CCDC88B-210ENST00000494566 LCE1EQ5T753 118 aa3.84□□□□□ -1.8
CCDC88B-210ENST00000494566 KRTAP5-3Q6L8H2 238 aa3.78□□□□□ -1.8
CCDC88B-210ENST00000494566 MUC5ACP98088 5654 aa3.77□□□□□ -1.81
CCDC88B-210ENST00000494566 LCE1FQ5T754 118 aa3.77□□□□□ -1.81
CCDC88B-210ENST00000494566 KRTAP9-9Q9BYP9 154 aa3.68□□□□□ -1.82
CCDC88B-210ENST00000494566 LCE1BQ5T7P3 118 aa3.67□□□□□ -1.82
CCDC88B-210ENST00000494566 KRTAP4-11Q9BYQ6 195 aa3.59□□□□□ -1.84
CCDC88B-210ENST00000494566 MUC19Q7Z5P9 8384 aa3.49□□□□□ -1.85
CCDC88B-210ENST00000494566 GPR98Q8WXG9 6306 aa3.44□□□□□ -1.86
CCDC88B-210ENST00000494566 KRTAP4-2Q9BYR5 136 aa3.38□□□□□ -1.87
CCDC88B-210ENST00000494566 KRTAP5-10Q6L8G5 202 aa3.37□□□□□ -1.87
CCDC88B-210ENST00000494566 KRTAP5-1Q6L8H4 278 aa3.37□□□□□ -1.87
CCDC88B-210ENST00000494566 KRTAP5-7Q6L8G8 165 aa3.36□□□□□ -1.87
CCDC88B-210ENST00000494566 AHNAK2Q8IVF2 5795 aa3.32□□□□□ -1.88
CCDC88B-210ENST00000494566 LCE1CQ5T751 118 aa3.29□□□□□ -1.88
CCDC88B-210ENST00000494566 KRTAP4-4Q9BYR3 166 aa3.19□□□□□ -1.9
CCDC88B-210ENST00000494566 KRTAP5-8O75690 187 aa3.18□□□□□ -1.9
CCDC88B-210ENST00000494566 KRTAP21-2Q3LI59 83 aa3.13□□□□□ -1.91
CCDC88B-210ENST00000494566 MUC5BQ9HC84 5762 aaPredicted RBP3.1□□□□□ -1.91
CCDC88B-210ENST00000494566 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.05□□□□□ -1.92
CCDC88B-210ENST00000494566 KRTAP4-12Q9BQ66 201 aa2.93□□□□□ -1.94
CCDC88B-210ENST00000494566 AHNAKQ09666 5890 aaKnown RBP2.93□□□□□ -1.94
CCDC88B-210ENST00000494566 KRTAP5-11Q6L8G4 156 aa2.83□□□□□ -1.96
CCDC88B-210ENST00000494566 KRTAP21-1Q3LI58 79 aa2.71□□□□□ -1.98
CCDC88B-210ENST00000494566 PHGR1C9JFL3 82 aa2.48□□□□□ -2.01
CCDC88B-210ENST00000494566 MUC16Q8WXI7 14507 aa1.63□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 6 ms