RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 KRTAP9-7A8MTY7 169 aa3.88□□□□□ -1.79
COL6A3-212ENST00000491769 HECTD4Q9Y4D8 3996 aa3.87□□□□□ -1.79
COL6A3-212ENST00000491769 PKHD1P08F94 4074 aa3.87□□□□□ -1.79
COL6A3-212ENST00000491769 LRP2P98164 4655 aa3.82□□□□□ -1.8
COL6A3-212ENST00000491769 KRTAP19-2Q3LHN2 52 aa3.81□□□□□ -1.8
COL6A3-212ENST00000491769 EPPK1P58107 5090 aaKnown RBP3.8□□□□□ -1.8
COL6A3-212ENST00000491769 MT1AP04731 61 aa3.77□□□□□ -1.81
COL6A3-212ENST00000491769 LCE1CQ5T751 118 aa3.77□□□□□ -1.81
COL6A3-212ENST00000491769 LCE1EQ5T753 118 aa3.77□□□□□ -1.81
COL6A3-212ENST00000491769 LCE1FQ5T754 118 aa3.77□□□□□ -1.81
COL6A3-212ENST00000491769 LCE1AQ5T7P2 110 aa3.77□□□□□ -1.81
COL6A3-212ENST00000491769 KRTAP4-9Q9BYQ8 210 aa3.76□□□□□ -1.81
COL6A3-212ENST00000491769 KRTAP2-3P0C7H8 128 aa3.75□□□□□ -1.81
COL6A3-212ENST00000491769 KRTAP2-4Q9BYR9 128 aa3.75□□□□□ -1.81
COL6A3-212ENST00000491769 MUC17Q685J3 4493 aa3.69□□□□□ -1.82
COL6A3-212ENST00000491769 KMT2CQ8NEZ4 4911 aaKnown RBP3.68□□□□□ -1.82
COL6A3-212ENST00000491769 KRTAP2-1Q9BYU5 128 aa3.68□□□□□ -1.82
COL6A3-212ENST00000491769 KRTAP6-3Q3LI67 103 aa3.67□□□□□ -1.82
COL6A3-212ENST00000491769 FLGP20930 4061 aaPredicted RBP3.67□□□□□ -1.82
COL6A3-212ENST00000491769 SYNE2Q8WXH0 6885 aaKnown RBP3.65□□□□□ -1.82
COL6A3-212ENST00000491769 HYDINQ4G0P3 5121 aa3.64□□□□□ -1.83
COL6A3-212ENST00000491769 TNXBP22105 4242 aa3.64□□□□□ -1.83
COL6A3-212ENST00000491769 LCE2AQ5TA79 106 aaPredicted RBP3.64□□□□□ -1.83
COL6A3-212ENST00000491769 KRTAP19-7Q3SYF9 63 aa3.62□□□□□ -1.83
COL6A3-212ENST00000491769 KRTAP6-2Q3LI66 62 aa3.61□□□□□ -1.83
COL6A3-212ENST00000491769 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.6□□□□□ -1.83
COL6A3-212ENST00000491769 LCE4AQ5TA78 99 aa3.6□□□□□ -1.83
COL6A3-212ENST00000491769 KRTAP2-2Q9BYT5 123 aa3.6□□□□□ -1.83
COL6A3-212ENST00000491769 FSIP2Q5CZC0 6907 aa3.53□□□□□ -1.84
COL6A3-212ENST00000491769 KRTAP6-1Q3LI64 71 aa3.53□□□□□ -1.84
COL6A3-212ENST00000491769 KRTAP9-4Q9BYQ2 154 aa3.51□□□□□ -1.85
COL6A3-212ENST00000491769 SYNE1Q8NF91 8797 aaKnown RBP3.49□□□□□ -1.85
COL6A3-212ENST00000491769 ABCA13Q86UQ4 5058 aa3.46□□□□□ -1.86
COL6A3-212ENST00000491769 MUC2Q02817 5179 aa3.4□□□□□ -1.87
COL6A3-212ENST00000491769 KRTAP9-9Q9BYP9 154 aa3.39□□□□□ -1.87
COL6A3-212ENST00000491769 RNF213Q63HN8 5207 aa3.37□□□□□ -1.87
COL6A3-212ENST00000491769 FAT4Q6V0I7 4981 aa3.37□□□□□ -1.87
COL6A3-212ENST00000491769 HMCN2Q8NDA2 5059 aa3.33□□□□□ -1.88
COL6A3-212ENST00000491769 OBSCNQ5VST9 7968 aa3.3□□□□□ -1.88
COL6A3-212ENST00000491769 UBR4Q5T4S7 5183 aa3.3□□□□□ -1.88
COL6A3-212ENST00000491769 KRTAP9-6A8MVA2 160 aa3.19□□□□□ -1.9
COL6A3-212ENST00000491769 KRTAP20-2Q3LI61 65 aa3.03□□□□□ -1.92
COL6A3-212ENST00000491769 KRTAP4-6Q9BYQ5 205 aa2.98□□□□□ -1.93
COL6A3-212ENST00000491769 KRTAP4-11Q9BYQ6 195 aa2.98□□□□□ -1.93
COL6A3-212ENST00000491769 NEBP20929 6669 aa2.97□□□□□ -1.93
COL6A3-212ENST00000491769 KRTAP4-12Q9BQ66 201 aa2.92□□□□□ -1.94
COL6A3-212ENST00000491769 KRTAP4-2Q9BYR5 136 aa2.92□□□□□ -1.94
COL6A3-212ENST00000491769 KRTAP4-4Q9BYR3 166 aa2.91□□□□□ -1.94
COL6A3-212ENST00000491769 MACF1Q9UPN3 7388 aaKnown RBP2.9□□□□□ -1.94
COL6A3-212ENST00000491769 DSTQ03001 7570 aaKnown RBP2.87□□□□□ -1.95
COL6A3-212ENST00000491769 USH2AO75445 5202 aa2.86□□□□□ -1.95
COL6A3-212ENST00000491769 KRTAP5-9P26371 169 aa2.82□□□□□ -1.96
COL6A3-212ENST00000491769 FCGBPQ9Y6R7 5405 aaPredicted RBP2.79□□□□□ -1.96
COL6A3-212ENST00000491769 KRTAP5-4Q6L8H1 288 aa2.66□□□□□ -1.98
COL6A3-212ENST00000491769 KMT2DO14686 5537 aa2.65□□□□□ -1.98
COL6A3-212ENST00000491769 GPR98Q8WXG9 6306 aa2.65□□□□□ -1.99
COL6A3-212ENST00000491769 SSPOA2VEC9 5147 aa2.62□□□□□ -1.99
COL6A3-212ENST00000491769 MUC19Q7Z5P9 8384 aa2.58□□□□□ -2
COL6A3-212ENST00000491769 MDN1Q9NU22 5596 aa2.47□□□□□ -2.01
COL6A3-212ENST00000491769 MUC12Q9UKN1 5478 aa2.42□□□□□ -2.02
COL6A3-212ENST00000491769 KRTAP5-5Q701N2 237 aaPredicted RBP2.39□□□□□ -2.03
COL6A3-212ENST00000491769 KRTAP5-3Q6L8H2 238 aa2.37□□□□□ -2.03
COL6A3-212ENST00000491769 PHGR1C9JFL3 82 aa2.28□□□□□ -2.04
COL6A3-212ENST00000491769 KRTAP5-8O75690 187 aa2.19□□□□□ -2.06
COL6A3-212ENST00000491769 MUC5ACP98088 5654 aa2.17□□□□□ -2.06
COL6A3-212ENST00000491769 AHNAK2Q8IVF2 5795 aa2.05□□□□□ -2.08
COL6A3-212ENST00000491769 HMCN1Q96RW7 5635 aa1.99□□□□□ -2.09
COL6A3-212ENST00000491769 KRTAP5-10Q6L8G5 202 aa1.89□□□□□ -2.11
COL6A3-212ENST00000491769 MUC5BQ9HC84 5762 aaPredicted RBP1.87□□□□□ -2.11
COL6A3-212ENST00000491769 KRTAP5-2Q701N4 177 aa1.82□□□□□ -2.12
COL6A3-212ENST00000491769 KRTAP5-1Q6L8H4 278 aa1.76□□□□□ -2.13
COL6A3-212ENST00000491769 AHNAKQ09666 5890 aaKnown RBP1.76□□□□□ -2.13
COL6A3-212ENST00000491769 KRTAP5-11Q6L8G4 156 aa1.74□□□□□ -2.13
COL6A3-212ENST00000491769 KRTAP21-2Q3LI59 83 aa1.58□□□□□ -2.16
COL6A3-212ENST00000491769 KRTAP21-1Q3LI58 79 aa1.5□□□□□ -2.17
COL6A3-212ENST00000491769 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.45□□□□□ -2.18
COL6A3-212ENST00000491769 KRTAP5-7Q6L8G8 165 aa1.43□□□□□ -2.18
COL6A3-212ENST00000491769 MUC16Q8WXI7 14507 aa1.22□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 66.5 ms