RNA–Protein interactions for RNA: ENST00000490910.5

CRNKL1-204, Transcript of crooked neck pre-mRNA splicing factor 1, humanhuman

TSL 1 (best)

Gene CRNKL1, Length 4,183 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRNKL1-204ENST00000490910 LCE3DQ9BYE3 92 aa3.55□□□□□ -1.84
CRNKL1-204ENST00000490910 LCE3EQ5T5B0 92 aa3.54□□□□□ -1.84
CRNKL1-204ENST00000490910 LOC100996750A0A140TA64 210 aa3.52□□□□□ -1.85
CRNKL1-204ENST00000490910 SPRR2FQ96RM1 72 aa3.5□□□□□ -1.85
CRNKL1-204ENST00000490910 PRM1P04553 51 aa3.46□□□□□ -1.86
CRNKL1-204ENST00000490910 KRTAP4-3Q9BYR4 195 aa3.46□□□□□ -1.86
CRNKL1-204ENST00000490910 KRTAP19-3Q7Z4W3 81 aa3.45□□□□□ -1.86
CRNKL1-204ENST00000490910 MT1MQ8N339 61 aa3.42□□□□□ -1.86
CRNKL1-204ENST00000490910 KRTAP4-9Q9BYQ8 210 aa3.35□□□□□ -1.87
CRNKL1-204ENST00000490910 KMT2DO14686 5537 aa3.32□□□□□ -1.88
CRNKL1-204ENST00000490910 FSIP2Q5CZC0 6907 aa3.29□□□□□ -1.88
CRNKL1-204ENST00000490910 FCGBPQ9Y6R7 5405 aaPredicted RBP3.24□□□□□ -1.89
CRNKL1-204ENST00000490910 MT1AP04731 61 aa3.23□□□□□ -1.89
CRNKL1-204ENST00000490910 KRTAP9-7A8MTY7 169 aa3.21□□□□□ -1.9
CRNKL1-204ENST00000490910 KRTAP9-2Q9BYQ4 174 aa3.2□□□□□ -1.9
CRNKL1-204ENST00000490910 OBSCNQ5VST9 7968 aa3.19□□□□□ -1.9
CRNKL1-204ENST00000490910 KRTAP19-6Q3LI70 58 aa3.18□□□□□ -1.9
CRNKL1-204ENST00000490910 USH2AO75445 5202 aa3.17□□□□□ -1.9
CRNKL1-204ENST00000490910 DSTQ03001 7570 aaKnown RBP3.14□□□□□ -1.91
CRNKL1-204ENST00000490910 LCE2AQ5TA79 106 aaPredicted RBP3.13□□□□□ -1.91
CRNKL1-204ENST00000490910 KRTAP6-1Q3LI64 71 aa3.12□□□□□ -1.91
CRNKL1-204ENST00000490910 KRTAP6-2Q3LI66 62 aa3.12□□□□□ -1.91
CRNKL1-204ENST00000490910 SPRR2EP22531 72 aa3.09□□□□□ -1.91
CRNKL1-204ENST00000490910 SPRR2BP35325 72 aa3.09□□□□□ -1.91
CRNKL1-204ENST00000490910 SPRR2AP35326 72 aa3.09□□□□□ -1.91
CRNKL1-204ENST00000490910 MT3P25713 68 aa3.08□□□□□ -1.92
CRNKL1-204ENST00000490910 LCE2DQ5TA82 110 aaPredicted RBP3.08□□□□□ -1.92
CRNKL1-204ENST00000490910 LCE5AQ5TCM9 118 aa3.04□□□□□ -1.92
CRNKL1-204ENST00000490910 KRTAP9-6A0A140TA67 174 aa2.98□□□□□ -1.93
CRNKL1-204ENST00000490910 SYNE2Q8WXH0 6885 aaKnown RBP2.96□□□□□ -1.94
CRNKL1-204ENST00000490910 SPRR2DP22532 72 aa2.96□□□□□ -1.94
CRNKL1-204ENST00000490910 KRTAP2-2Q9BYT5 123 aa2.95□□□□□ -1.94
CRNKL1-204ENST00000490910 MUC12Q9UKN1 5478 aa2.94□□□□□ -1.94
CRNKL1-204ENST00000490910 KRTAP9-4Q9BYQ2 154 aa2.9□□□□□ -1.94
CRNKL1-204ENST00000490910 KRTAP5-5Q701N2 237 aaPredicted RBP2.9□□□□□ -1.95
CRNKL1-204ENST00000490910 SSPOA2VEC9 5147 aa2.89□□□□□ -1.95
CRNKL1-204ENST00000490910 LCE1AQ5T7P2 110 aa2.88□□□□□ -1.95
CRNKL1-204ENST00000490910 KRTAP6-3Q3LI67 103 aa2.84□□□□□ -1.96
CRNKL1-204ENST00000490910 MACF1Q9UPN3 7388 aaKnown RBP2.74□□□□□ -1.97
CRNKL1-204ENST00000490910 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.72□□□□□ -1.97
CRNKL1-204ENST00000490910 LCE1DQ5T752 114 aa2.72□□□□□ -1.97
CRNKL1-204ENST00000490910 LCE1BQ5T7P3 118 aa2.69□□□□□ -1.98
CRNKL1-204ENST00000490910 LCE1EQ5T753 118 aa2.68□□□□□ -1.98
CRNKL1-204ENST00000490910 MT4P47944 62 aa2.66□□□□□ -1.98
CRNKL1-204ENST00000490910 KRTAP4-11Q9BYQ6 195 aa2.57□□□□□ -2
CRNKL1-204ENST00000490910 MDN1Q9NU22 5596 aa2.52□□□□□ -2.01
CRNKL1-204ENST00000490910 MUC19Q7Z5P9 8384 aa2.45□□□□□ -2.02
CRNKL1-204ENST00000490910 KRTAP5-9P26371 169 aa2.43□□□□□ -2.02
CRNKL1-204ENST00000490910 KRTAP4-6Q9BYQ5 205 aa2.41□□□□□ -2.02
CRNKL1-204ENST00000490910 NEBP20929 6669 aa2.39□□□□□ -2.03
CRNKL1-204ENST00000490910 KRTAP20-1Q3LI63 56 aa2.39□□□□□ -2.03
CRNKL1-204ENST00000490910 LCE4AQ5TA78 99 aa2.34□□□□□ -2.03
CRNKL1-204ENST00000490910 KRTAP20-2Q3LI61 65 aa2.25□□□□□ -2.05
CRNKL1-204ENST00000490910 KRTAP5-4Q6L8H1 288 aa2.17□□□□□ -2.06
CRNKL1-204ENST00000490910 KRTAP5-10Q6L8G5 202 aa2.14□□□□□ -2.07
CRNKL1-204ENST00000490910 MUC5ACP98088 5654 aa2.14□□□□□ -2.07
CRNKL1-204ENST00000490910 LCE1FQ5T754 118 aa2.12□□□□□ -2.07
CRNKL1-204ENST00000490910 KRTAP4-4Q9BYR3 166 aa2.08□□□□□ -2.08
CRNKL1-204ENST00000490910 GPR98Q8WXG9 6306 aa2.05□□□□□ -2.08
CRNKL1-204ENST00000490910 HMCN1Q96RW7 5635 aa2.01□□□□□ -2.09
CRNKL1-204ENST00000490910 LCE1CQ5T751 118 aa1.99□□□□□ -2.09
CRNKL1-204ENST00000490910 KRTAP5-2Q701N4 177 aa1.97□□□□□ -2.09
CRNKL1-204ENST00000490910 KRTAP4-12Q9BQ66 201 aa1.92□□□□□ -2.1
CRNKL1-204ENST00000490910 KRTAP21-1Q3LI58 79 aa1.87□□□□□ -2.11
CRNKL1-204ENST00000490910 KRTAP5-3Q6L8H2 238 aa1.86□□□□□ -2.11
CRNKL1-204ENST00000490910 KRTAP5-1Q6L8H4 278 aa1.86□□□□□ -2.11
CRNKL1-204ENST00000490910 KRTAP4-2Q9BYR5 136 aa1.85□□□□□ -2.11
CRNKL1-204ENST00000490910 AHNAK2Q8IVF2 5795 aa1.85□□□□□ -2.11
CRNKL1-204ENST00000490910 KRTAP9-9Q9BYP9 154 aa1.84□□□□□ -2.11
CRNKL1-204ENST00000490910 KRTAP21-2Q3LI59 83 aa1.79□□□□□ -2.12
CRNKL1-204ENST00000490910 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.66□□□□□ -2.14
CRNKL1-204ENST00000490910 KRTAP5-7Q6L8G8 165 aa1.64□□□□□ -2.15
CRNKL1-204ENST00000490910 KRTAP5-8O75690 187 aa1.63□□□□□ -2.15
CRNKL1-204ENST00000490910 KRTAP5-11Q6L8G4 156 aa1.62□□□□□ -2.15
CRNKL1-204ENST00000490910 MUC5BQ9HC84 5762 aaPredicted RBP1.58□□□□□ -2.16
CRNKL1-204ENST00000490910 AHNAKQ09666 5890 aaKnown RBP1.53□□□□□ -2.17
CRNKL1-204ENST00000490910 PHGR1C9JFL3 82 aa1.37□□□□□ -2.19
CRNKL1-204ENST00000490910 MUC16Q8WXI7 14507 aa0.98□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 9.6 ms